Cxcr6 (C-X-C motif chemokine receptor 6) - Rat Genome Database

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Gene: Cxcr6 (C-X-C motif chemokine receptor 6) Chinchilla lanigera
Analyze
Symbol: Cxcr6
Name: C-X-C motif chemokine receptor 6
RGD ID: 8786853
Description: ENCODES a protein that exhibits C-X-C chemokine binding (ortholog); C-X-C chemokine receptor activity (ortholog); INVOLVED IN chemokine-mediated signaling pathway (ortholog); ASSOCIATED WITH Progressive Microcephaly with Seizures and Cerebral and Cerebellar Atrophy (ortholog); systemic scleroderma (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: C-X-C chemokine receptor type 6; chemokine (C-X-C motif) receptor 6
RGD Orthologs
Human
Mouse
Rat
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: ChiLan1.0 - Chinchilla ChiLan1.0 Assembly
Position:
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495542026,058,170 - 26,059,216 (-)EnsemblChiLan1.0
ChiLan1.0NW_00495542026,056,464 - 26,061,992 (-)NCBIChiLan1.0ChiLan1.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. Transitive Annotation Pipeline Automated assignment of GO, PW and RDO ISO annotations across species
Additional References at PubMed
PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
Cxcr6
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495542026,058,170 - 26,059,216 (-)EnsemblChiLan1.0
ChiLan1.0NW_00495542026,056,464 - 26,061,992 (-)NCBIChiLan1.0ChiLan1.0
CXCR6
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38345,940,915 - 45,948,351 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl345,940,933 - 45,948,351 (+)EnsemblGRCh38hg38GRCh38
GRCh37345,982,407 - 45,989,843 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 36345,959,977 - 45,964,849 (+)NCBINCBI36Build 36hg18NCBI36
Build 34345,959,976 - 45,964,849NCBI
Celera345,922,592 - 45,927,464 (+)NCBICelera
Cytogenetic Map3p21.31NCBI
HuRef346,029,014 - 46,033,886 (+)NCBIHuRef
CHM1_1345,934,937 - 45,939,809 (+)NCBICHM1_1
T2T-CHM13v2.0345,956,798 - 45,964,234 (+)NCBIT2T-CHM13v2.0
Cxcr6
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm399123,635,542 - 123,640,819 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl9123,635,540 - 123,640,825 (+)EnsemblGRCm39 Ensembl
GRCm389123,806,477 - 123,811,754 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl9123,806,475 - 123,811,760 (+)EnsemblGRCm38mm10GRCm38
MGSCv379123,715,595 - 123,720,872 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv369123,655,183 - 123,660,452 (+)NCBIMGSCv36mm8
Celera9124,254,890 - 124,260,158 (+)NCBICelera
Cytogenetic Map9F4NCBI
cM Map974.57NCBI
Cxcr6
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr88132,311,834 - 132,317,001 (+)NCBIGRCr8
mRatBN7.28123,434,417 - 123,439,568 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl8123,416,325 - 123,439,526 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx8129,029,512 - 129,031,301 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.08127,228,489 - 127,230,278 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.08125,057,730 - 125,059,519 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.08132,869,712 - 132,870,766 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl8132,869,712 - 132,870,767 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.08132,020,812 - 132,021,866 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.48128,569,564 - 128,570,619 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera8122,545,994 - 122,547,048 (+)NCBICelera
Cytogenetic Map8q32NCBI
CXCR6
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2245,908,856 - 45,913,375 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1345,910,606 - 45,918,049 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0345,848,722 - 45,856,145 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1346,955,051 - 46,962,490 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl346,960,610 - 46,961,638 (+)Ensemblpanpan1.1panPan2
CXCR6
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.12042,565,251 - 42,569,647 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl2042,565,251 - 42,566,276 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha2042,480,213 - 42,484,961 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.02043,047,331 - 43,052,077 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl2043,047,336 - 43,052,021 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.12042,288,235 - 42,292,978 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.02042,695,451 - 42,700,197 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.02042,970,759 - 42,975,506 (-)NCBIUU_Cfam_GSD_1.0
Cxcr6
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024405118200,483,742 - 200,489,756 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_00493659637,067 - 38,092 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_00493659631,641 - 44,561 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
CXCR6
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1329,095,900 - 29,100,667 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11329,095,900 - 29,100,666 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21332,192,310 - 32,197,076 (+)NCBISscrofa10.2Sscrofa10.2susScr3
CXCR6
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1227,413,871 - 7,419,229 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl227,414,334 - 7,419,213 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_023666041159,746,814 - 159,751,690 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Cxcr6
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_00462473074,960,324 - 74,961,337 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression


Sequence


Reference Sequences
RefSeq Acc Id: ENSCLAT00000026183   ⟹   ENSCLAP00000025881
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0 EnsemblNW_00495542026,058,170 - 26,059,216 (-)Ensembl
RefSeq Acc Id: XM_005383457   ⟹   XP_005383514
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_00495542026,056,464 - 26,061,992 (-)NCBI
Sequence:
Protein Sequences
Protein RefSeqs XP_005383514 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSCLAP00000025881
  ENSCLAP00000025881.1
Reference Protein Sequences
RefSeq Acc Id: XP_005383514   ⟸   XM_005383457
- UniProtKB: A0A8C2W6F0 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSCLAP00000025881   ⟸   ENSCLAT00000026183
Protein Domains
G-protein coupled receptors family 1 profile


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSCLAG00000018009 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSCLAT00000026183 ENTREZGENE
  ENSCLAT00000026183.1 UniProtKB/TrEMBL
Gene3D-CATH Rhodopsin 7-helix transmembrane proteins UniProtKB/TrEMBL
InterPro Chemokine_CXCR6 UniProtKB/TrEMBL
  Chemokine_rcpt UniProtKB/TrEMBL
  GPCR_Rhodpsn UniProtKB/TrEMBL
  GPCR_Rhodpsn_7TM UniProtKB/TrEMBL
NCBI Gene Cxcr6 ENTREZGENE
PANTHER CELL ADHESION MOLECULE UniProtKB/TrEMBL
  PTHR10489:SF705 UniProtKB/TrEMBL
Pfam 7tm_1 UniProtKB/TrEMBL
PRINTS CCCHEMOKINER UniProtKB/TrEMBL
  CXCCHMKINER6 UniProtKB/TrEMBL
  GPCRRHODOPSN UniProtKB/TrEMBL
PROSITE G_PROTEIN_RECEP_F1_1 UniProtKB/TrEMBL
  G_PROTEIN_RECEP_F1_2 UniProtKB/TrEMBL
Superfamily-SCOP Family A G protein-coupled receptor-like UniProtKB/TrEMBL
UniProt A0A8C2W6F0 ENTREZGENE, UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2016-08-03 Cxcr6  C-X-C motif chemokine receptor 6    chemokine (C-X-C motif) receptor 6  Symbol and/or name change 5135510 APPROVED