Cimap3 (ciliary microtubule associated protein 3) - Rat Genome Database

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Gene: Cimap3 (ciliary microtubule associated protein 3) Chinchilla lanigera
Analyze
Symbol: Cimap3
Name: ciliary microtubule associated protein 3 (Ensembl:primary cilia formation)
RGD ID: 8786730
Description: ENCODES a protein that exhibits beta-tubulin binding (ortholog); gamma-tubulin binding (ortholog); kinesin binding (ortholog); INVOLVED IN cilium organization (ortholog); embryonic heart tube left/right pattern formation (ortholog); regulation of cell projection organization (ortholog); ASSOCIATED WITH autistic disorder (ortholog); genetic disease (ortholog); FOUND IN trans-Golgi network (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: Pifo; primary cilia formation
RGD Orthologs
Human
Mouse
Rat
Bonobo
Dog
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: ChiLan1.0 - Chinchilla ChiLan1.0 Assembly
Position:
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495543514,892,459 - 14,898,092 (+)EnsemblChiLan1.0
ChiLan1.0NW_00495543514,888,554 - 14,898,274 (+)NCBIChiLan1.0ChiLan1.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. Transitive Annotation Pipeline Automated assignment of GO, PW and RDO ISO annotations across species
Additional References at PubMed
PMID:30032202  


Genomics

Comparative Map Data
Cimap3
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495543514,892,459 - 14,898,092 (+)EnsemblChiLan1.0
ChiLan1.0NW_00495543514,888,554 - 14,898,274 (+)NCBIChiLan1.0ChiLan1.0
CIMAP3
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381111,324,663 - 111,353,017 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1111,346,600 - 111,353,013 (+)EnsemblGRCh38hg38GRCh38
GRCh371111,889,182 - 111,895,639 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 361111,690,771 - 111,697,158 (+)NCBINCBI36Build 36hg18NCBI36
Celera1110,136,149 - 110,142,593 (+)NCBICelera
Cytogenetic Map1p13.2NCBI
HuRef1109,760,637 - 109,767,081 (+)NCBIHuRef
CHM1_11112,004,230 - 112,010,674 (+)NCBICHM1_1
T2T-CHM13v2.01111,339,352 - 111,367,700 (+)NCBIT2T-CHM13v2.0
Cimap3
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm393105,904,273 - 105,921,962 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl3105,904,273 - 105,921,962 (-)EnsemblGRCm39 Ensembl
GRCm383105,996,957 - 106,014,646 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl3105,996,957 - 106,014,646 (-)EnsemblGRCm38mm10GRCm38
MGSCv373105,799,875 - 105,817,564 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv363105,799,588 - 105,817,564 (-)NCBIMGSCv36mm8
Celera3108,188,669 - 108,206,446 (-)NCBICelera
Cytogenetic Map3F2.2NCBI
cM Map346.47NCBI
Cimap3
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr82196,164,103 - 196,181,466 (-)NCBIGRCr8
mRatBN7.22193,475,785 - 193,493,092 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl2193,475,782 - 193,493,139 (-)EnsemblmRatBN7.2 Ensembl
Rnor_6.02208,616,592 - 208,633,961 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl2208,616,589 - 208,633,945 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.02228,037,805 - 228,055,061 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.42201,247,609 - 201,254,234 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera2186,178,234 - 186,184,986 (-)NCBICelera
Cytogenetic Map2q34NCBI
CIMAP3
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21115,691,179 - 115,719,510 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11114,841,515 - 114,868,346 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01113,991,254 - 113,997,982 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11126,349,244 - 126,355,968 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1126,349,244 - 126,355,968 (-)Ensemblpanpan1.1panPan2
LOC611691
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1640,730,086 - 40,750,906 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha643,508,218 - 43,528,999 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0641,062,527 - 41,082,948 (-)NCBIROS_Cfam_1.0
UMICH_Zoey_3.1640,744,944 - 40,804,021 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0640,753,322 - 40,774,135 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0641,188,633 - 41,209,440 (-)NCBIUU_Cfam_GSD_1.0
CIMAP3
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.14109,021,109 - 109,033,715 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.24119,397,201 - 119,407,103 (-)NCBISscrofa10.2Sscrofa10.2susScr3
CIMAP3
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12022,250,933 - 22,269,420 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl2022,249,682 - 22,256,695 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366603836,222,418 - 36,229,451 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Cimap3
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046247727,091,047 - 7,097,970 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046247727,080,535 - 7,096,603 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression


Sequence


RefSeq Acc Id: ENSCLAT00000010819   ⟹   ENSCLAP00000010687
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0 EnsemblNW_00495543514,892,459 - 14,898,092 (+)Ensembl
RefSeq Acc Id: XM_005388944   ⟹   XP_005389001
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_00495543514,888,554 - 14,898,274 (+)NCBI
Sequence:
RefSeq Acc Id: XM_005388945   ⟹   XP_005389002
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_00495543514,888,554 - 14,898,274 (+)NCBI
Sequence:
RefSeq Acc Id: XM_005388946   ⟹   XP_005389003
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_00495543514,892,983 - 14,898,274 (+)NCBI
Sequence:
RefSeq Acc Id: XM_005388947   ⟹   XP_005389004
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_00495543514,892,987 - 14,898,274 (+)NCBI
Sequence:
Protein Sequences
Protein RefSeqs XP_005389001 (Get FASTA)   NCBI Sequence Viewer  
  XP_005389002 (Get FASTA)   NCBI Sequence Viewer  
  XP_005389003 (Get FASTA)   NCBI Sequence Viewer  
  XP_005389004 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSCLAP00000010687
  ENSCLAP00000010687.1
RefSeq Acc Id: XP_005389001   ⟸   XM_005388944
- Peptide Label: isoform X1
- Sequence:
RefSeq Acc Id: XP_005389002   ⟸   XM_005388945
- Peptide Label: isoform X2
- Sequence:
RefSeq Acc Id: XP_005389003   ⟸   XM_005388946
- Peptide Label: isoform X3
- Sequence:
RefSeq Acc Id: XP_005389004   ⟸   XM_005388947
- Peptide Label: isoform X4
- UniProtKB: A0A8C2V831 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSCLAP00000010687   ⟸   ENSCLAT00000010819


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSCLAG00000007375 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSCLAT00000010819 ENTREZGENE
  ENSCLAT00000010819.1 UniProtKB/TrEMBL
InterPro Pitchfork UniProtKB/TrEMBL
  SHIPPO-rpt UniProtKB/TrEMBL
NCBI Gene Pifo ENTREZGENE
PANTHER PROTEIN PITCHFORK UniProtKB/TrEMBL
  PTHR31508 UniProtKB/TrEMBL
Pfam SHIPPO-rpt UniProtKB/TrEMBL
UniProt A0A8C2V831 ENTREZGENE, UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2023-05-09 Cimap3  ciliary microtubule associated protein 3  Pifo  primary cilia formation  Symbol and/or name change 5135510 APPROVED