Bnip3l (BCL2 interacting protein 3 like) - Rat Genome Database

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Gene: Bnip3l (BCL2 interacting protein 3 like) Chinchilla lanigera
Analyze
Symbol: Bnip3l
Name: BCL2 interacting protein 3 like
RGD ID: 8785512
Description: ENCODES a protein that exhibits identical protein binding (ortholog); lamin binding (ortholog); protein homodimerization activity (ortholog); INVOLVED IN cellular response to hypoxia (ortholog); defense response to virus (ortholog); mitochondrial protein catabolic process (ortholog); PARTICIPATES IN intrinsic apoptotic pathway; mitochondrial autophagy pathway; ASSOCIATED WITH amyotrophic lateral sclerosis (ortholog); Cerebral Hemorrhage (ortholog); Chronic Cerebral Hypoperfusion (ortholog); FOUND IN endoplasmic reticulum (ortholog); mitochondrial outer membrane (ortholog); mitochondrion (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: BCL2/adenovirus E1B 19 kDa protein-interacting protein 3-like; BCL2/adenovirus E1B 19kDa interacting protein 3-like
RGD Orthologs
Human
Mouse
Rat
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: ChiLan1.0 - Chinchilla ChiLan1.0 Assembly
Position:
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495540349,122,408 - 49,144,998 (+)EnsemblChiLan1.0
ChiLan1.0NW_00495540349,122,408 - 49,144,162 (+)NCBIChiLan1.0ChiLan1.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Function

Molecular Pathway Annotations     Click to see Annotation Detail View
References

References - curated
# Reference Title Reference Citation
1. Transitive Annotation Pipeline Automated assignment of GO, PW and RDO ISO annotations across species
Additional References at PubMed
PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
Bnip3l
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495540349,122,408 - 49,144,998 (+)EnsemblChiLan1.0
ChiLan1.0NW_00495540349,122,408 - 49,144,162 (+)NCBIChiLan1.0ChiLan1.0
BNIP3L
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38826,383,054 - 26,413,127 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl826,383,054 - 26,505,636 (+)EnsemblGRCh38hg38GRCh38
GRCh37826,240,570 - 26,270,643 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 36826,296,440 - 26,326,561 (+)NCBINCBI36Build 36hg18NCBI36
Build 34826,296,439 - 26,326,561NCBI
Celera825,202,906 - 25,233,027 (+)NCBICelera
Cytogenetic Map8p21.2NCBI
HuRef824,785,443 - 24,815,530 (+)NCBIHuRef
CHM1_1826,442,112 - 26,472,262 (+)NCBICHM1_1
T2T-CHM13v2.0826,659,614 - 26,689,692 (+)NCBIT2T-CHM13v2.0
Bnip3l
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391467,222,688 - 67,246,580 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1467,222,688 - 67,246,326 (-)EnsemblGRCm39 Ensembl
GRCm381466,985,238 - 67,008,877 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1466,985,239 - 67,008,877 (-)EnsemblGRCm38mm10GRCm38
MGSCv371467,604,077 - 67,627,714 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361465,939,350 - 65,962,934 (-)NCBIMGSCv36mm8
Celera1464,740,567 - 64,764,166 (-)NCBICelera
Cytogenetic Map14D1NCBI
cM Map1434.6NCBI
Bnip3l
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81545,350,081 - 45,373,213 (-)NCBIGRCr8
mRatBN7.21541,174,594 - 41,197,730 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1541,174,594 - 41,197,803 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1543,040,103 - 43,063,202 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01544,190,315 - 44,213,414 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01542,634,876 - 42,658,005 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01543,643,897 - 43,667,123 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1543,643,897 - 43,667,029 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01547,927,887 - 47,951,099 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41546,516,626 - 46,539,756 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11546,532,405 - 46,555,536 (-)NCBI
Celera1540,841,989 - 40,865,114 (-)NCBICelera
Cytogenetic Map15p12NCBI
BNIP3L
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2744,921,918 - 44,946,345 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1820,636,229 - 20,660,479 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0825,661,629 - 25,685,878 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1822,567,167 - 22,593,004 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl822,567,428 - 22,593,004 (+)Ensemblpanpan1.1panPan2
BNIP3L
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.12531,133,512 - 31,149,750 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl2531,136,168 - 31,148,905 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha2531,721,380 - 31,744,197 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.02531,333,654 - 31,356,477 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl2531,309,183 - 31,357,312 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.12531,290,601 - 31,313,410 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.02531,138,672 - 31,161,471 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.02531,305,758 - 31,328,586 (-)NCBIUU_Cfam_GSD_1.0
Bnip3l
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_0244049439,246,819 - 9,270,823 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_004936757499,147 - 523,541 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_004936757499,485 - 523,494 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
BNIP3L
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1410,318,732 - 10,345,679 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11410,318,688 - 10,345,689 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21411,483,806 - 11,510,808 (+)NCBISscrofa10.2Sscrofa10.2susScr3
BNIP3L
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1824,497,311 - 24,521,424 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl824,497,351 - 24,523,553 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366605217,637,530 - 17,661,690 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Bnip3l
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462475821,284,167 - 21,310,398 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462475821,284,165 - 21,309,957 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression


Sequence


Reference Sequences
RefSeq Acc Id: ENSCLAT00000023871   ⟹   ENSCLAP00000023646
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0 EnsemblNW_00495540349,122,408 - 49,144,998 (+)Ensembl
RefSeq Acc Id: XM_005373726   ⟹   XP_005373783
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_00495540349,122,408 - 49,144,162 (+)NCBI
Sequence:
Protein Sequences
Protein RefSeqs XP_005373783 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSCLAP00000023646
  ENSCLAP00000023646.1
Reference Protein Sequences
RefSeq Acc Id: XP_005373783   ⟸   XM_005373726
- UniProtKB: A0A8C2W1N0 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSCLAP00000023646   ⟸   ENSCLAT00000023871


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSCLAG00000016223 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSCLAT00000023871 ENTREZGENE
  ENSCLAT00000023871.1 UniProtKB/TrEMBL
Gene3D-CATH 6.10.250.1020 UniProtKB/TrEMBL
InterPro BNIP3 UniProtKB/TrEMBL
NCBI Gene Bnip3l ENTREZGENE
PANTHER BCL2/ADENOVIRUS E1B 19 KDA PROTEIN-INTERACTING PROTEIN 3-LIKE UniProtKB/TrEMBL
  PTHR15186 UniProtKB/TrEMBL
Pfam BNIP3 UniProtKB/TrEMBL
UniProt A0A8C2W1N0 ENTREZGENE, UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2016-08-03 Bnip3l  BCL2 interacting protein 3 like    BCL2/adenovirus E1B 19kDa interacting protein 3-like  Symbol and/or name change 5135510 APPROVED