Ipo11 (importin 11) - Rat Genome Database

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Gene: Ipo11 (importin 11) Chinchilla lanigera
Analyze
Symbol: Ipo11
Name: importin 11
RGD ID: 8763266
Description: ASSOCIATED WITH genetic disease (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: importin-11
RGD Orthologs
Human
Mouse
Rat
Bonobo
Squirrel
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: ChiLan1.0 - Chinchilla ChiLan1.0 Assembly
Position:
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554466,034,277 - 6,225,640 (-)EnsemblChiLan1.0
ChiLan1.0NW_0049554466,034,277 - 6,225,627 (-)NCBIChiLan1.0ChiLan1.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

References

References - curated
# Reference Title Reference Citation
1. Transitive Annotation Pipeline Automated assignment of GO, PW and RDO ISO annotations across species
Additional References at PubMed
PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
Ipo11
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554466,034,277 - 6,225,640 (-)EnsemblChiLan1.0
ChiLan1.0NW_0049554466,034,277 - 6,225,627 (-)NCBIChiLan1.0ChiLan1.0
IPO11
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38562,578,735 - 62,628,589 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl562,403,972 - 62,628,582 (+)EnsemblGRCh38hg38GRCh38
GRCh37561,874,562 - 61,924,416 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 36561,744,351 - 61,960,165 (+)NCBINCBI36Build 36hg18NCBI36
Build 34561,744,350 - 61,960,164NCBI
Celera558,704,531 - 58,921,350 (+)NCBICelera
Cytogenetic Map5q12.1NCBI
HuRef558,830,947 - 58,880,547 (+)NCBIHuRef
CHM1_1561,874,345 - 61,924,070 (+)NCBICHM1_1
T2T-CHM13v2.0563,398,374 - 63,448,302 (+)NCBIT2T-CHM13v2.0
Ipo11-lrrc70
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm3913106,930,947 - 106,972,810 (-)NCBIGRCm39GRCm39mm39
GRCm3813106,794,439 - 106,836,302 (-)NCBIGRCm38GRCm38mm10GRCm38
Cytogenetic Map13D1NCBI
Ipo11
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8239,903,316 - 40,076,485 (-)NCBIGRCr8
mRatBN7.2238,169,688 - 38,342,929 (-)NCBImRatBN7.2mRatBN7.2
Rnor_6.0237,952,982 - 38,120,451 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl237,954,161 - 38,110,567 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0257,049,753 - 57,215,181 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4238,006,409 - 38,054,430 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.1237,926,777 - 37,974,871 (-)NCBI
Celera234,041,416 - 34,210,706 (-)NCBICelera
Cytogenetic Map2q13NCBI
IPO11
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2451,287,365 - 51,499,916 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1549,440,997 - 49,653,546 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0551,370,503 - 51,584,256 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1553,013,430 - 53,226,598 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl553,013,430 - 53,226,598 (-)Ensemblpanpan1.1panPan2
Ipo11
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024407213197,168,763 - 197,374,904 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049364806,104,333 - 6,304,413 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049364806,105,237 - 6,311,335 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
IPO11
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1458,602,143 - 58,827,120 (+)NCBIChlSab1.1ChlSab1.1chlSab2
Vero_WHO_p1.0NW_0236660497,121,956 - 7,352,145 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Ipo11
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046248157,254,909 - 7,478,569 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046248157,255,803 - 7,492,289 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression


Sequence


RefSeq Acc Id: ENSCLAT00000005578   ⟹   ENSCLAP00000005478
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0 EnsemblNW_0049554466,034,277 - 6,225,640 (-)Ensembl
RefSeq Acc Id: ENSCLAT00000005579   ⟹   ENSCLAP00000005479
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0 EnsemblNW_0049554466,036,050 - 6,204,902 (-)Ensembl
RefSeq Acc Id: XM_005392641   ⟹   XP_005392698
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_0049554466,034,277 - 6,225,627 (-)NCBI
Sequence:
RefSeq Acc Id: XM_013518422   ⟹   XP_013373876
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_0049554466,088,863 - 6,225,627 (-)NCBI
Sequence:
Protein Sequences
Protein RefSeqs XP_005392698 (Get FASTA)   NCBI Sequence Viewer  
  XP_013373876 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSCLAP00000005478
  ENSCLAP00000005478.1
  ENSCLAP00000005479.1
RefSeq Acc Id: XP_005392698   ⟸   XM_005392641
- Peptide Label: isoform X1
- UniProtKB: A0A8C2UY99 (UniProtKB/TrEMBL),   A0A8C2UTA4 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_013373876   ⟸   XM_013518422
- Peptide Label: isoform X2
- UniProtKB: A0A8C2UTA4 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSCLAP00000005479   ⟸   ENSCLAT00000005579
RefSeq Acc Id: ENSCLAP00000005478   ⟸   ENSCLAT00000005578
Protein Domains
Importin N-terminal


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSCLAG00000003889 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSCLAT00000005578 ENTREZGENE
  ENSCLAT00000005578.1 UniProtKB/TrEMBL
  ENSCLAT00000005579.1 UniProtKB/TrEMBL
Gene3D-CATH 1.25.10.10 UniProtKB/TrEMBL
InterPro ARM-like UniProtKB/TrEMBL
  ARM-type_fold UniProtKB/TrEMBL
  Importin-beta_N UniProtKB/TrEMBL
NCBI Gene Ipo11 ENTREZGENE
PANTHER IMPORTIN-11 UniProtKB/TrEMBL
  IMPORTIN-7, 8, 11 UniProtKB/TrEMBL
Pfam IBN_N UniProtKB/TrEMBL
PROSITE IMPORTIN_B_NT UniProtKB/TrEMBL
SMART IBN_N UniProtKB/TrEMBL
Superfamily-SCOP SSF48371 UniProtKB/TrEMBL
UniProt A0A8C2UTA4 ENTREZGENE, UniProtKB/TrEMBL
  A0A8C2UY99 ENTREZGENE, UniProtKB/TrEMBL