Zbtb24 (zinc finger and BTB domain containing 24) - Rat Genome Database

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Gene: Zbtb24 (zinc finger and BTB domain containing 24) Chinchilla lanigera
Analyze
Symbol: Zbtb24
Name: zinc finger and BTB domain containing 24
RGD ID: 8762337
Description: INVOLVED IN hematopoietic progenitor cell differentiation (ortholog); ASSOCIATED WITH Charcot-Marie-Tooth disease type 4 (ortholog); genetic disease (ortholog); immunodeficiency-centromeric instability-facial anomalies syndrome 2 (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: zinc finger and BTB domain-containing protein 24
RGD Orthologs
Human
Mouse
Rat
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: ChiLan1.0 - Chinchilla ChiLan1.0 Assembly
NCBI Annotation Information: Annotation category: partial on reference assembly
Position:
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495541134,503,812 - 34,521,196 (-)EnsemblChiLan1.0
ChiLan1.0NW_00495541134,502,355 - 34,521,196 (-)NCBIChiLan1.0ChiLan1.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. Transitive Annotation Pipeline Automated assignment of GO, PW and RDO ISO annotations across species
2. OMIM Disease Annotation Pipeline OMIM Disease Annotation Pipeline
Additional References at PubMed
PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
Zbtb24
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495541134,503,812 - 34,521,196 (-)EnsemblChiLan1.0
ChiLan1.0NW_00495541134,502,355 - 34,521,196 (-)NCBIChiLan1.0ChiLan1.0
ZBTB24
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh386109,462,594 - 109,483,219 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl6109,460,632 - 109,483,239 (-)EnsemblGRCh38hg38GRCh38
GRCh376109,783,797 - 109,804,422 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 366109,890,412 - 109,911,133 (-)NCBINCBI36Build 36hg18NCBI36
Build 346109,890,411 - 109,911,133NCBI
Celera6110,530,317 - 110,551,038 (-)NCBICelera
Cytogenetic Map6q21NCBI
HuRef6107,349,834 - 107,370,476 (-)NCBIHuRef
CHM1_16110,046,805 - 110,067,503 (-)NCBICHM1_1
T2T-CHM13v2.06110,640,632 - 110,661,258 (-)NCBIT2T-CHM13v2.0
Zbtb24
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391041,326,354 - 41,341,578 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1041,326,379 - 41,341,570 (+)EnsemblGRCm39 Ensembl
GRCm381041,450,358 - 41,465,582 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1041,450,383 - 41,465,574 (+)EnsemblGRCm38mm10GRCm38
MGSCv371041,170,202 - 41,185,380 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361041,138,811 - 41,153,989 (+)NCBIMGSCv36mm8
Celera1042,336,649 - 42,351,827 (+)NCBICelera
Cytogenetic Map10B1NCBI
cM Map1022.38NCBI
Zbtb24
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr82046,525,982 - 46,546,363 (+)NCBIGRCr8
mRatBN7.22044,943,302 - 44,965,329 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl2044,947,297 - 44,963,963 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx2046,664,806 - 46,681,470 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.02046,314,981 - 46,331,645 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.02047,021,740 - 47,038,172 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.02046,168,149 - 46,189,806 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl2046,168,177 - 46,189,806 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.02047,865,623 - 47,882,126 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.42045,409,557 - 45,426,510 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.12045,431,891 - 45,434,228 (+)NCBI
Celera2054,989,650 - 55,005,488 (-)NCBICelera
Cytogenetic Map20q12NCBI
ZBTB24
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v25129,474,390 - 129,492,024 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan16127,365,739 - 127,383,347 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v06107,265,762 - 107,286,397 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.16111,314,128 - 111,334,687 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl6111,314,134 - 111,334,674 (-)Ensemblpanpan1.1panPan2
ZBTB24
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11266,368,160 - 66,380,631 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1266,369,083 - 66,380,759 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha1266,187,958 - 66,200,694 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.01267,253,566 - 67,265,564 (-)NCBIROS_Cfam_1.0
UMICH_Zoey_3.11266,601,180 - 66,613,923 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.01266,450,012 - 66,462,752 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01266,721,724 - 66,734,464 (-)NCBIUU_Cfam_GSD_1.0
Zbtb24
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024404946101,311,416 - 101,331,250 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365645,587,560 - 5,606,189 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049365645,588,360 - 5,606,140 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
ZBTB24
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl175,531,036 - 75,548,772 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1175,531,034 - 75,548,795 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2184,870,373 - 84,876,757 (-)NCBISscrofa10.2Sscrofa10.2susScr3
ZBTB24
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11364,383,306 - 64,401,148 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl1364,384,519 - 64,400,875 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366604036,676,237 - 36,694,064 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Zbtb24
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_004624916720,119 - 738,934 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression


Sequence


Reference Sequences
RefSeq Acc Id: ENSCLAT00000016421   ⟹   ENSCLAP00000016257
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0 EnsemblNW_00495541134,503,812 - 34,521,196 (-)Ensembl
RefSeq Acc Id: ENSCLAT00000016422   ⟹   ENSCLAP00000016258
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0 EnsemblNW_00495541134,503,812 - 34,519,746 (-)Ensembl
RefSeq Acc Id: XM_005377878   ⟹   XP_005377935
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_00495541134,502,355 - 34,521,196 (-)NCBI
Sequence:
Protein Sequences
Protein RefSeqs XP_005377935 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSCLAP00000016257
  ENSCLAP00000016257.1
  ENSCLAP00000016258.1
Reference Protein Sequences
RefSeq Acc Id: XP_005377935   ⟸   XM_005377878
- UniProtKB: A0A8C2VQI6 (UniProtKB/TrEMBL),   A0A8C2VL22 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSCLAP00000016258   ⟸   ENSCLAT00000016422
RefSeq Acc Id: ENSCLAP00000016257   ⟸   ENSCLAT00000016421
Protein Domains
BTB   C2H2-type


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSCLAG00000011189 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSCLAT00000016421 ENTREZGENE
  ENSCLAT00000016421.1 UniProtKB/TrEMBL
  ENSCLAT00000016422.1 UniProtKB/TrEMBL
Gene3D-CATH Classic Zinc Finger UniProtKB/TrEMBL
InterPro BTB/POZ_dom UniProtKB/TrEMBL
  SKP1/BTB/POZ_sf UniProtKB/TrEMBL
  Znf_C2H2_sf UniProtKB/TrEMBL
  Znf_C2H2_type UniProtKB/TrEMBL
NCBI Gene Zbtb24 ENTREZGENE
PANTHER FINGER PUTATIVE TRANSCRIPTION FACTOR FAMILY-RELATED UniProtKB/TrEMBL
  ZINC FINGER AND BTB DOMAIN-CONTAINING PROTEIN 47 UniProtKB/TrEMBL
  ZINC FINGER PROTEIN UniProtKB/TrEMBL
  ZINC FINGER PROTEIN 771 UniProtKB/TrEMBL
Pfam BTB UniProtKB/TrEMBL
  zf-C2H2 UniProtKB/TrEMBL
  zf-C2H2_6 UniProtKB/TrEMBL
PROSITE BTB UniProtKB/TrEMBL
  ZINC_FINGER_C2H2_1 UniProtKB/TrEMBL
  ZINC_FINGER_C2H2_2 UniProtKB/TrEMBL
SMART BTB UniProtKB/TrEMBL
  ZnF_C2H2 UniProtKB/TrEMBL
Superfamily-SCOP SSF54695 UniProtKB/TrEMBL
  SSF57667 UniProtKB/TrEMBL
UniProt A0A8C2VL22 ENTREZGENE, UniProtKB/TrEMBL
  A0A8C2VQI6 ENTREZGENE, UniProtKB/TrEMBL