Acyp1 (acylphosphatase 1) - Rat Genome Database

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Gene: Acyp1 (acylphosphatase 1) Chinchilla lanigera
Analyze
Symbol: Acyp1
Name: acylphosphatase 1
RGD ID: 8758232
Description: PARTICIPATES IN Leigh disease pathway; primary hyperoxaluria type 2 pathway; pyruvate decarboxylase deficiency pathway; ASSOCIATED WITH Developmental Disabilities (ortholog); intellectual disability (ortholog); Niemann-Pick disease type C1 (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: acylphosphatase 1, erythrocyte (common) type; acylphosphatase-1
RGD Orthologs
Human
Mouse
Rat
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: ChiLan1.0 - Chinchilla ChiLan1.0 Assembly
Position:
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_004955523499,508 - 508,273 (+)EnsemblChiLan1.0
ChiLan1.0NW_004955523499,508 - 507,809 (+)NCBIChiLan1.0ChiLan1.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


References

References - curated
# Reference Title Reference Citation
1. Transitive Annotation Pipeline Automated assignment of GO, PW and RDO ISO annotations across species
Additional References at PubMed
PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
Acyp1
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_004955523499,508 - 508,273 (+)EnsemblChiLan1.0
ChiLan1.0NW_004955523499,508 - 507,809 (+)NCBIChiLan1.0ChiLan1.0
ACYP1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381475,053,243 - 75,069,490 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1475,053,237 - 75,069,483 (-)EnsemblGRCh38hg38GRCh38
GRCh371475,519,946 - 75,536,193 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 361474,589,677 - 74,600,489 (-)NCBINCBI36Build 36hg18NCBI36
Build 341474,589,682 - 74,600,489NCBI
Celera1455,557,594 - 55,568,402 (-)NCBICelera
Cytogenetic Map14q24.3NCBI
HuRef1455,688,111 - 55,698,922 (-)NCBIHuRef
CHM1_11475,458,458 - 75,468,510 (-)NCBICHM1_1
T2T-CHM13v2.01469,262,663 - 69,278,894 (-)NCBIT2T-CHM13v2.0
Acyp1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391285,319,172 - 85,335,257 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1285,319,172 - 85,335,212 (-)EnsemblGRCm39 Ensembl
GRCm381285,272,398 - 85,288,438 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1285,272,398 - 85,288,438 (-)EnsemblGRCm38mm10GRCm38
MGSCv371286,613,348 - 86,621,385 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361286,161,509 - 86,169,538 (-)NCBIMGSCv36mm8
Celera1286,730,048 - 86,738,085 (-)NCBICelera
Cytogenetic Map12D1NCBI
cM Map1239.62NCBI
Acyp1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr86110,650,213 - 110,663,404 (-)NCBIGRCr8
mRatBN7.26104,919,162 - 104,932,348 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl6104,919,162 - 104,932,387 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx6105,088,768 - 105,095,753 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.06105,387,639 - 105,394,624 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.06104,757,301 - 104,764,286 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.06109,097,065 - 109,110,266 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl6109,097,065 - 109,104,050 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.06116,446,795 - 116,459,981 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.46109,320,444 - 109,327,303 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.16109,323,898 - 109,337,013 (-)NCBI
Celera6102,742,108 - 102,749,093 (-)NCBICelera
Cytogenetic Map6q31NCBI
ACYP1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21576,135,529 - 76,151,767 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11475,352,033 - 75,368,271 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01455,604,853 - 55,621,133 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11474,449,300 - 74,464,884 (-)NCBIpanpan1.1PanPan1.1panPan2
ACYP1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1848,155,415 - 48,169,211 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl848,155,412 - 48,169,261 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha847,839,531 - 47,848,071 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0848,383,042 - 48,396,748 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl848,383,039 - 48,396,884 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1848,053,825 - 48,062,365 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0848,075,306 - 48,083,633 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0848,473,789 - 48,482,329 (-)NCBIUU_Cfam_GSD_1.0
Acyp1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440864027,857,355 - 27,871,991 (+)NCBIHiC_Itri_2
SpeTri2.0NW_0049364884,196,977 - 4,211,552 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
ACYP1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl798,220,555 - 98,247,125 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1798,220,318 - 98,265,187 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.27104,093,822 - 104,109,273 (-)NCBISscrofa10.2Sscrofa10.2susScr3
ACYP1
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12452,267,734 - 52,283,724 (-)NCBIChlSab1.1ChlSab1.1chlSab2
Vero_WHO_p1.0NW_02366605340,498,448 - 40,514,460 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Acyp1
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462473426,619,100 - 26,638,714 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462473426,612,509 - 26,638,491 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression


Sequence


Reference Sequences
RefSeq Acc Id: ENSCLAT00000004409   ⟹   ENSCLAP00000004326
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0 EnsemblNW_004955523499,508 - 508,273 (+)Ensembl
RefSeq Acc Id: XM_005409377   ⟹   XP_005409434
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_004955523499,508 - 507,809 (+)NCBI
Sequence:
Protein Sequences
Protein RefSeqs XP_005409434 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSCLAP00000004326
  ENSCLAP00000004326.1
Reference Protein Sequences
RefSeq Acc Id: XP_005409434   ⟸   XM_005409377
- UniProtKB: A0A8C2UVJ0 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSCLAP00000004326   ⟸   ENSCLAT00000004409
Protein Domains
Acylphosphatase-like


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSCLAG00000003079 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSCLAT00000004409 ENTREZGENE
  ENSCLAT00000004409.1 UniProtKB/TrEMBL
Gene3D-CATH 3.30.70.100 UniProtKB/TrEMBL
InterPro Acylphosphatase UniProtKB/TrEMBL
  Acylphosphatase-like_dom UniProtKB/TrEMBL
  Acylphosphatase-like_dom_sf UniProtKB/TrEMBL
  Acylphosphatase_CS UniProtKB/TrEMBL
NCBI Gene Acyp1 ENTREZGENE
PANTHER ACYLPHOSPHATASE-1 UniProtKB/TrEMBL
  PTHR10029 UniProtKB/TrEMBL
Pfam Acylphosphatase UniProtKB/TrEMBL
PRINTS ACYLPHPHTASE UniProtKB/TrEMBL
PROSITE ACYLPHOSPHATASE_1 UniProtKB/TrEMBL
  ACYLPHOSPHATASE_2 UniProtKB/TrEMBL
  ACYLPHOSPHATASE_3 UniProtKB/TrEMBL
Superfamily-SCOP SSF54975 UniProtKB/TrEMBL
UniProt A0A8C2UVJ0 ENTREZGENE, UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2016-08-03 Acyp1  acylphosphatase 1    acylphosphatase 1, erythrocyte (common) type  Symbol and/or name change 5135510 APPROVED