Il1rapl2 (interleukin 1 receptor accessory protein like 2) - Rat Genome Database

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Gene: Il1rapl2 (interleukin 1 receptor accessory protein like 2) Chinchilla lanigera
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Symbol: Il1rapl2
Name: interleukin 1 receptor accessory protein like 2
RGD ID: 8756733
Description: INVOLVED IN regulation of presynapse assembly (ortholog); ASSOCIATED WITH autistic disorder (ortholog); Pelizaeus-Merzbacher disease (ortholog); syndromic X-linked intellectual disability Lubs type (ortholog); FOUND IN glutamatergic synapse (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: interleukin 1 receptor accessory protein-like 2; X-linked interleukin-1 receptor accessory protein-like 2
RGD Orthologs
Human
Mouse
Rat
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: ChiLan1.0 - Chinchilla ChiLan1.0 Assembly
Position:
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049555481,518,695 - 2,623,232 (+)EnsemblChiLan1.0
ChiLan1.0NW_0049555481,462,746 - 2,623,622 (+)NCBIChiLan1.0ChiLan1.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

References

References - curated
# Reference Title Reference Citation
1. Transitive Annotation Pipeline Automated assignment of GO, PW and RDO ISO annotations across species
Additional References at PubMed
PMID:22301074  


Genomics

Comparative Map Data
Il1rapl2
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049555481,518,695 - 2,623,232 (+)EnsemblChiLan1.0
ChiLan1.0NW_0049555481,462,746 - 2,623,622 (+)NCBIChiLan1.0ChiLan1.0
IL1RAPL2
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38X104,566,199 - 105,767,829 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 EnsemblX104,566,199 - 105,767,829 (+)EnsemblGRCh38hg38GRCh38
GRCh37X103,810,880 - 105,011,822 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 36X103,697,652 - 104,898,478 (+)NCBINCBI36Build 36hg18NCBI36
Build 34X103,617,140 - 104,817,967NCBI
CeleraX104,285,598 - 105,486,376 (+)NCBICelera
Cytogenetic MapXq22.3NCBI
HuRefX93,435,071 - 94,637,503 (+)NCBIHuRef
CHM1_1X103,721,823 - 104,923,126 (+)NCBICHM1_1
T2T-CHM13v2.0X102,997,341 - 104,199,639 (+)NCBIT2T-CHM13v2.0
Il1rapl2
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39X136,471,503 - 137,749,826 (+)NCBIGRCm39GRCm39mm39
GRCm39 EnsemblX136,471,357 - 137,747,695 (+)EnsemblGRCm39 Ensembl
GRCm38X137,570,754 - 138,849,077 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 EnsemblX137,570,608 - 138,846,946 (+)EnsemblGRCm38mm10GRCm38
MGSCv37X134,106,088 - 135,381,494 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36X132,917,913 - 134,193,319 (+)NCBIMGSCv36mm8
CeleraX120,847,137 - 122,116,600 (+)NCBICelera
Cytogenetic MapXF1NCBI
cM MapX59.1NCBI
Il1rapl2
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8X105,547,403 - 107,080,369 (+)NCBIGRCr8
mRatBN7.2X100,961,509 - 102,271,753 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 EnsemblX100,961,812 - 102,271,753 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_UtxX103,091,652 - 104,402,604 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0X106,590,329 - 107,901,342 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0X104,159,516 - 105,470,309 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0X108,287,034 - 109,851,075 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 EnsemblX108,287,068 - 109,851,047 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0X108,785,045 - 109,131,750 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
Rnor_5.0X108,150,787 - 108,254,866 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
Rnor_5.0X109,679,033 - 109,708,181 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4X125,013,154 - 126,352,850 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
CeleraX101,764,259 - 103,062,805 (+)NCBICelera
Cytogenetic MapXq32NCBI
IL1RAPL2
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2X104,717,496 - 105,287,774 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1X104,721,096 - 105,291,374 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0X93,689,575 - 94,904,887 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1X104,068,596 - 105,283,662 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 EnsemblX104,161,023 - 105,283,494 (+)Ensemblpanpan1.1panPan2
IL1RAPL2
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1X77,918,264 - 78,959,932 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
Dog10K_Boxer_TashaX64,099,554 - 65,432,679 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0X79,587,004 - 80,920,111 (+)NCBIROS_Cfam_1.0
UMICH_Zoey_3.1X77,071,569 - 78,402,563 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0X78,775,315 - 80,098,087 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0X79,222,860 - 79,875,803 (+)NCBIUU_Cfam_GSD_1.0
Il1rapl2
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2X77,812,504 - 78,870,601 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049364998,790,139 - 9,771,800 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049364998,788,093 - 9,048,583 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
IL1RAPL2
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 EnsemblX85,347,857 - 86,463,507 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1X85,347,867 - 86,464,670 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2X100,533,436 - 100,826,715 (+)NCBISscrofa10.2Sscrofa10.2susScr3
LOC103232439
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1X92,433,337 - 93,646,131 (+)NCBIChlSab1.1ChlSab1.1chlSab2
Vero_WHO_p1.0NW_02366606518,591,761 - 18,651,036 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Il1rapl2
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462480310,919,651 - 12,243,480 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462480310,917,671 - 12,315,002 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts XM_005412011 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AGCD01072376 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AGCD01072377 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AGCD01072378 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AGCD01072379 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AGCD01072380 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AGCD01072381 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AGCD01072382 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AGCD01072383 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AGCD01072384 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AGCD01072385 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AGCD01072386 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AGCD01072387 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AGCD01072388 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AGCD01072389 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AGCD01072390 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AGCD01072391 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AGCD01072392 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AGCD01072393 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AGCD01072394 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AGCD01072395 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AGCD01072396 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AGCD01072397 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AGCD01072398 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AGCD01072399 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AGCD01072400 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AGCD01072401 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AGCD01072402 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AGCD01072403 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AGCD01072404 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AGCD01072405 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AGCD01072406 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AGCD01072407 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

RefSeq Acc Id: ENSCLAT00000000605   ⟹   ENSCLAP00000000574
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0 EnsemblNW_0049555481,518,695 - 2,623,232 (+)Ensembl
RefSeq Acc Id: XM_005412011   ⟹   XP_005412068
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_0049555481,462,746 - 2,623,622 (+)NCBI
Sequence:
Protein Sequences
Protein RefSeqs XP_005412068 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSCLAP00000000574
  ENSCLAP00000000574.1
RefSeq Acc Id: XP_005412068   ⟸   XM_005412011
- UniProtKB: A0A8C2YI84 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSCLAP00000000574   ⟸   ENSCLAT00000000605
Protein Domains
Ig-like   TIR


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSCLAG00000000464 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSCLAT00000000605 ENTREZGENE
  ENSCLAT00000000605.1 UniProtKB/TrEMBL
Gene3D-CATH 2.60.40.10 UniProtKB/TrEMBL
  3.40.50.10140 UniProtKB/TrEMBL
InterPro Ig-like_dom UniProtKB/TrEMBL
  Ig-like_dom_sf UniProtKB/TrEMBL
  Ig-like_fold UniProtKB/TrEMBL
  Ig_I-set UniProtKB/TrEMBL
  Ig_sub UniProtKB/TrEMBL
  IL-1_rcpt_fam UniProtKB/TrEMBL
  IL-1_rcpt_II-typ UniProtKB/TrEMBL
  TIR_dom UniProtKB/TrEMBL
  Toll_tir_struct_dom_sf UniProtKB/TrEMBL
NCBI Gene Il1rapl2 ENTREZGENE
PANTHER PTHR11890 UniProtKB/TrEMBL
  X-LINKED INTERLEUKIN-1 RECEPTOR ACCESSORY PROTEIN-LIKE 2 UniProtKB/TrEMBL
Pfam I-set UniProtKB/TrEMBL
  Ig_2 UniProtKB/TrEMBL
  TIR UniProtKB/TrEMBL
PRINTS INTRLEUKN1R2 UniProtKB/TrEMBL
  INTRLKN1R1F UniProtKB/TrEMBL
PROSITE IG_LIKE UniProtKB/TrEMBL
  TIR UniProtKB/TrEMBL
SMART SM00409 UniProtKB/TrEMBL
  TIR UniProtKB/TrEMBL
Superfamily-SCOP SSF48726 UniProtKB/TrEMBL
  SSF52200 UniProtKB/TrEMBL
UniProt A0A8C2YI84 ENTREZGENE, UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2016-08-03 Il1rapl2  interleukin 1 receptor accessory protein like 2    interleukin 1 receptor accessory protein-like 2  Symbol and/or name change 5135510 APPROVED