Tmem230 (transmembrane protein 230) - Rat Genome Database

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Gene: Tmem230 (transmembrane protein 230) Chinchilla lanigera
Analyze
Symbol: Tmem230
Name: transmembrane protein 230
RGD ID: 8752952
Description: INVOLVED IN axonal transport (ortholog); synaptic vesicle transport (ortholog); ASSOCIATED WITH genetic disease (ortholog); Huntington's disease-like 1 (ortholog); pantothenate kinase-associated neurodegeneration (ortholog); FOUND IN early endosome (ortholog); endoplasmic reticulum (ortholog); late endosome (ortholog)
Type: protein-coding
RefSeq Status: MODEL
RGD Orthologs
Human
Mouse
Rat
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: ChiLan1.0 - Chinchilla ChiLan1.0 Assembly
Position:
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495541515,733,134 - 15,742,909 (-)EnsemblChiLan1.0
ChiLan1.0NW_00495541515,733,134 - 15,743,078 (-)NCBIChiLan1.0ChiLan1.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. Transitive Annotation Pipeline Automated assignment of GO, PW and RDO ISO annotations across species
Additional References at PubMed
PMID:30032202  


Genomics

Comparative Map Data
Tmem230
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495541515,733,134 - 15,742,909 (-)EnsemblChiLan1.0
ChiLan1.0NW_00495541515,733,134 - 15,743,078 (-)NCBIChiLan1.0ChiLan1.0
TMEM230
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38205,059,116 - 5,113,076 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl205,068,232 - 5,113,103 (-)EnsemblGRCh38hg38GRCh38
GRCh37205,049,021 - 5,093,722 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 36205,028,484 - 5,041,733 (-)NCBINCBI36Build 36hg18NCBI36
Build 34205,028,488 - 5,041,733NCBI
Celera205,150,515 - 5,163,754 (-)NCBICelera
Cytogenetic Map20p13-p12.3NCBI
HuRef205,034,470 - 5,047,667 (-)NCBIHuRef
CHM1_1205,081,893 - 5,095,117 (-)NCBICHM1_1
T2T-CHM13v2.0205,106,395 - 5,152,503 (-)NCBIT2T-CHM13v2.0
Tmem230
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm392132,081,412 - 132,089,708 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl2132,081,412 - 132,089,727 (-)EnsemblGRCm39 Ensembl
GRCm382132,239,492 - 132,249,059 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl2132,239,492 - 132,247,807 (-)EnsemblGRCm38mm10GRCm38
MGSCv372132,065,228 - 132,073,524 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv362131,930,935 - 131,939,223 (-)NCBIMGSCv36mm8
Celera2133,462,697 - 133,470,973 (-)NCBICelera
Cytogenetic Map2F2NCBI
cM Map264.15NCBI
Tmem230
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr83139,925,878 - 139,950,517 (-)NCBIGRCr8
mRatBN7.23119,473,109 - 119,497,617 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl3119,480,735 - 119,497,614 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx3123,393,264 - 123,401,313 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.03131,980,464 - 131,988,513 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.03129,649,367 - 129,657,417 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.03124,870,867 - 124,879,274 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl3124,870,869 - 124,879,216 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.03131,364,935 - 131,374,803 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.43119,997,329 - 120,007,233 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.13119,903,901 - 119,910,807 (-)NCBI
Celera3118,287,027 - 118,295,085 (-)NCBICelera
Cytogenetic Map3q36NCBI
TMEM230
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2216,047,330 - 6,060,643 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1206,044,154 - 6,057,448 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0205,119,775 - 5,133,079 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1204,912,738 - 4,925,884 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl204,882,980 - 4,925,869 (-)Ensemblpanpan1.1panPan2
TMEM230
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.12416,486,514 - 16,496,180 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl2416,486,574 - 16,495,491 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha2416,309,406 - 16,319,054 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.02416,899,876 - 16,909,479 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl2416,899,898 - 16,909,479 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.12416,496,892 - 16,506,538 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.02416,603,823 - 16,613,484 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.02416,937,617 - 16,947,230 (+)NCBIUU_Cfam_GSD_1.0
Tmem230
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024408640165,340,708 - 165,347,837 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_00493648513,772,106 - 13,779,201 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_00493648513,772,093 - 13,779,201 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
TMEM230
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1714,125,730 - 14,136,387 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11714,125,728 - 14,136,443 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21715,116,169 - 15,126,776 (-)NCBISscrofa10.2Sscrofa10.2susScr3
TMEM230
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1232,955,522 - 32,968,578 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl232,955,538 - 32,969,152 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366607111,566,489 - 11,579,581 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Tmem230
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046247416,135,252 - 6,142,469 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046247416,133,251 - 6,142,366 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression


Sequence


Reference Sequences
RefSeq Acc Id: ENSCLAT00000019158   ⟹   ENSCLAP00000018973
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0 EnsemblNW_00495541515,733,134 - 15,742,909 (-)Ensembl
RefSeq Acc Id: XM_005380825   ⟹   XP_005380882
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_00495541515,736,575 - 15,743,078 (-)NCBI
Sequence:
RefSeq Acc Id: XM_005380826   ⟹   XP_005380883
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_00495541515,733,134 - 15,743,078 (-)NCBI
Sequence:
RefSeq Acc Id: XM_005380827   ⟹   XP_005380884
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_00495541515,736,575 - 15,742,909 (-)NCBI
Sequence:
Protein Sequences
Protein RefSeqs XP_005380882 (Get FASTA)   NCBI Sequence Viewer  
  XP_005380883 (Get FASTA)   NCBI Sequence Viewer  
  XP_005380884 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSCLAP00000018973
  ENSCLAP00000018973.1
Reference Protein Sequences
RefSeq Acc Id: XP_005380883   ⟸   XM_005380826
- UniProtKB: A0A8C2VVE5 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_005380882   ⟸   XM_005380825
- UniProtKB: A0A8C2VVE5 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_005380884   ⟸   XM_005380827
- UniProtKB: A0A8C2VVE5 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSCLAP00000018973   ⟸   ENSCLAT00000019158


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSCLAG00000012994 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSCLAT00000019158 ENTREZGENE
  ENSCLAT00000019158.1 UniProtKB/TrEMBL
InterPro TMEM230 UniProtKB/TrEMBL
  TMEM_230/134 UniProtKB/TrEMBL
NCBI Gene Tmem230 ENTREZGENE
PANTHER PTHR15664 UniProtKB/TrEMBL
  TRANSMEMBRANE PROTEIN 230 UniProtKB/TrEMBL
Pfam TMEM_230_134 UniProtKB/TrEMBL
UniProt A0A8C2VVE5 ENTREZGENE, UniProtKB/TrEMBL