Sec24d (SEC24 homolog D, COPII coat complex component) - Rat Genome Database

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Gene: Sec24d (SEC24 homolog D, COPII coat complex component) Chinchilla lanigera
Analyze
Symbol: Sec24d
Name: SEC24 homolog D, COPII coat complex component
RGD ID: 8749384
Description: ENCODES a protein that exhibits SNARE binding (ortholog); zinc ion binding (ortholog); INVOLVED IN COPII-coated vesicle cargo loading (ortholog); endoplasmic reticulum to Golgi vesicle-mediated transport (ortholog); in utero embryonic development (ortholog); ASSOCIATED WITH Cole-Carpenter syndrome (ortholog); Cole-Carpenter Syndrome 2 (ortholog); epilepsy (ortholog); FOUND IN COPII vesicle coat (ortholog); intracellular membrane-bounded organelle (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: SEC24 family, member D
RGD Orthologs
Human
Mouse
Rat
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: ChiLan1.0 - Chinchilla ChiLan1.0 Assembly
Position:
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495542821,381,809 - 21,500,429 (+)EnsemblChiLan1.0
ChiLan1.0NW_00495542821,381,809 - 21,475,329 (+)NCBIChiLan1.0ChiLan1.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. Transitive Annotation Pipeline Automated assignment of GO, PW and RDO ISO annotations across species
Additional References at PubMed
PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
Sec24d
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495542821,381,809 - 21,500,429 (+)EnsemblChiLan1.0
ChiLan1.0NW_00495542821,381,809 - 21,475,329 (+)NCBIChiLan1.0ChiLan1.0
SEC24D
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh384118,722,823 - 118,836,126 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl4118,722,823 - 118,838,683 (-)EnsemblGRCh38hg38GRCh38
GRCh374119,643,978 - 119,757,281 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 364119,863,427 - 119,976,702 (-)NCBINCBI36Build 36hg18NCBI36
Build 344120,001,581 - 120,114,857NCBI
Celera4117,004,529 - 117,117,866 (-)NCBICelera
Cytogenetic Map4q26NCBI
HuRef4115,365,531 - 115,479,569 (-)NCBIHuRef
CHM1_14119,619,921 - 119,733,840 (-)NCBICHM1_1
T2T-CHM13v2.04122,028,139 - 122,141,474 (-)NCBIT2T-CHM13v2.0
Sec24d
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm393123,058,451 - 123,159,290 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl3123,061,104 - 123,159,290 (+)EnsemblGRCm39 Ensembl
GRCm383123,264,801 - 123,365,641 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl3123,267,455 - 123,365,641 (+)EnsemblGRCm38mm10GRCm38
MGSCv373122,970,414 - 123,068,554 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv363123,259,518 - 123,357,658 (+)NCBIMGSCv36mm8
Celera3129,677,953 - 129,787,733 (+)NCBICelera
Cytogenetic Map3G1NCBI
cM Map353.82NCBI
Sec24d
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr82214,103,138 - 214,211,155 (+)NCBIGRCr8
mRatBN7.22211,418,557 - 211,526,588 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl2211,418,623 - 211,526,587 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx2219,091,582 - 219,198,356 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.02216,991,462 - 217,098,234 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.02211,845,703 - 211,952,480 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.02227,455,704 - 227,562,801 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl2227,455,722 - 227,562,319 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.02246,815,650 - 246,919,957 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.42219,985,811 - 220,096,797 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.12219,950,676 - 220,059,192 (+)NCBI
Celera2203,833,456 - 203,940,242 (+)NCBICelera
Cytogenetic Map2q42NCBI
SEC24D
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v23116,505,263 - 116,622,112 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan14116,802,002 - 116,918,966 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v04110,916,508 - 111,033,298 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.14121,468,914 - 121,584,647 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl4121,468,914 - 121,582,156 (-)Ensemblpanpan1.1panPan2
SEC24D
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.13237,690,158 - 37,795,762 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl3237,690,399 - 37,924,252 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha324,279,402 - 4,383,982 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.03237,911,481 - 38,017,151 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl3237,911,481 - 38,014,944 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.13237,933,932 - 38,039,567 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.03237,657,914 - 37,762,852 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0322,038,782 - 2,143,773 (+)NCBIUU_Cfam_GSD_1.0
Sec24d
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440530167,620,346 - 67,698,409 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_004936869522,706 - 563,704 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_004936869485,706 - 566,591 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
SEC24D
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl8104,882,035 - 105,005,398 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.18104,560,723 - 105,005,400 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.28112,778,267 - 112,789,489 (-)NCBISscrofa10.2Sscrofa10.2susScr3
SEC24D
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1766,208,005 - 66,318,222 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl766,207,765 - 66,318,206 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366603745,045,256 - 45,155,626 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Sec24d
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_0046248675,536,888 - 5,631,867 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression


Sequence


Reference Sequences
RefSeq Acc Id: ENSCLAT00000014072   ⟹   ENSCLAP00000013916
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0 EnsemblNW_00495542821,381,809 - 21,500,429 (+)Ensembl
RefSeq Acc Id: ENSCLAT00000014073   ⟹   ENSCLAP00000013917
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0 EnsemblNW_00495542821,381,809 - 21,473,325 (+)Ensembl
RefSeq Acc Id: XM_013515264   ⟹   XP_013370718
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_00495542821,381,809 - 21,474,263 (+)NCBI
Sequence:
RefSeq Acc Id: XM_013515265   ⟹   XP_013370719
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_00495542821,381,809 - 21,475,329 (+)NCBI
Sequence:
Protein Sequences
Protein RefSeqs XP_013370718 (Get FASTA)   NCBI Sequence Viewer  
  XP_013370719 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSCLAP00000013916.1
  ENSCLAP00000013917
  ENSCLAP00000013917.1
Reference Protein Sequences
RefSeq Acc Id: XP_013370719   ⟸   XM_013515265
- Peptide Label: isoform X2
- Sequence:
RefSeq Acc Id: XP_013370718   ⟸   XM_013515264
- Peptide Label: isoform X1
- UniProtKB: A0A8C2VIS6 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSCLAP00000013916   ⟸   ENSCLAT00000014072
RefSeq Acc Id: ENSCLAP00000013917   ⟸   ENSCLAT00000014073
Protein Domains
Gelsolin-like   Sec23/Sec24 beta-sandwich   Sec23/Sec24 helical   Sec23/Sec24 trunk   Zinc finger Sec23/Sec24-type


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSCLAG00000009632 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSCLAT00000014072.1 UniProtKB/TrEMBL
  ENSCLAT00000014073 ENTREZGENE
  ENSCLAT00000014073.1 UniProtKB/TrEMBL
Gene3D-CATH 3.40.20.10 UniProtKB/TrEMBL
  3.40.50.410 UniProtKB/TrEMBL
  beta-sandwich domain of Sec23/24 UniProtKB/TrEMBL
  Sec23/Sec24 helical domain UniProtKB/TrEMBL
  Zn-finger domain of Sec23/24 UniProtKB/TrEMBL
InterPro ADF-H/Gelsolin-like_dom_sf UniProtKB/TrEMBL
  Gelsolin-like_dom UniProtKB/TrEMBL
  Gelsolin-like_dom_sf UniProtKB/TrEMBL
  Sec23/24_helical_dom UniProtKB/TrEMBL
  Sec23/24_helical_dom_sf UniProtKB/TrEMBL
  Sec23/24_trunk_dom UniProtKB/TrEMBL
  Sec23_24_beta_S UniProtKB/TrEMBL
  Sec24-like_trunk_dom UniProtKB/TrEMBL
  vWFA_dom_sf UniProtKB/TrEMBL
  Znf_Sec23_Sec24 UniProtKB/TrEMBL
NCBI Gene Sec24d ENTREZGENE
PANTHER PROTEIN TRANSPORT PROTEIN SEC24D UniProtKB/TrEMBL
  SEC24-RELATED PROTEIN UniProtKB/TrEMBL
Pfam Gelsolin UniProtKB/TrEMBL
  Sec23_BS UniProtKB/TrEMBL
  Sec23_helical UniProtKB/TrEMBL
  Sec23_trunk UniProtKB/TrEMBL
  zf-Sec23_Sec24 UniProtKB/TrEMBL
Superfamily-SCOP beta-sandwich domain of Sec23/24 UniProtKB/TrEMBL
  SSF53300 UniProtKB/TrEMBL
  SSF81811 UniProtKB/TrEMBL
  SSF82754 UniProtKB/TrEMBL
UniProt A0A8C2VFJ9_CHILA UniProtKB/TrEMBL
  A0A8C2VIS6 ENTREZGENE, UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2015-08-25 Sec24d  SEC24 homolog D, COPII coat complex component    SEC24 family, member D (S. cerevisiae)  Symbol and/or name change 5135510 APPROVED