Api5 (apoptosis inhibitor 5) - Rat Genome Database

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Gene: Api5 (apoptosis inhibitor 5) Chinchilla lanigera
Analyze
Symbol: Api5
Name: apoptosis inhibitor 5
RGD ID: 8745906
Description: ENCODES a protein that exhibits fibroblast growth factor binding (ortholog); INVOLVED IN fibroblast apoptotic process (ortholog); negative regulation of apoptotic process (ortholog); negative regulation of fibroblast apoptotic process (ortholog); ASSOCIATED WITH cervical cancer (ortholog); genetic disease (ortholog); intellectual disability (ortholog); FOUND IN nuclear speck (ortholog); nucleus (ortholog); spliceosomal complex (ortholog)
Type: protein-coding
RefSeq Status: MODEL
RGD Orthologs
Human
Mouse
Rat
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: ChiLan1.0 - Chinchilla ChiLan1.0 Assembly
Position:
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554224,121,837 - 4,149,471 (-)EnsemblChiLan1.0
ChiLan1.0NW_0049554224,121,913 - 4,149,242 (-)NCBIChiLan1.0ChiLan1.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. Transitive Annotation Pipeline Automated assignment of GO, PW and RDO ISO annotations across species
Additional References at PubMed
PMID:30032202  


Genomics

Comparative Map Data
Api5
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554224,121,837 - 4,149,471 (-)EnsemblChiLan1.0
ChiLan1.0NW_0049554224,121,913 - 4,149,242 (-)NCBIChiLan1.0ChiLan1.0
API5
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381143,311,996 - 43,344,529 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1143,311,963 - 43,344,529 (+)EnsemblGRCh38hg38GRCh38
GRCh371143,333,546 - 43,366,079 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 361143,290,109 - 43,322,655 (+)NCBINCBI36Build 36hg18NCBI36
Build 341143,290,108 - 43,322,655NCBI
Celera1143,480,519 - 43,513,094 (+)NCBICelera
Cytogenetic Map11p12NCBI
HuRef1143,043,693 - 43,076,275 (+)NCBIHuRef
CHM1_11143,333,124 - 43,365,702 (+)NCBICHM1_1
T2T-CHM13v2.01143,467,432 - 43,499,960 (+)NCBIT2T-CHM13v2.0
Api5
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39294,242,073 - 94,268,490 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl294,242,027 - 94,268,481 (-)EnsemblGRCm39 Ensembl
GRCm38294,411,727 - 94,438,186 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl294,411,682 - 94,438,136 (-)EnsemblGRCm38mm10GRCm38
MGSCv37294,251,884 - 94,278,304 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36294,212,571 - 94,238,912 (-)NCBIMGSCv36mm8
Celera295,808,356 - 95,834,786 (-)NCBICelera
Cytogenetic Map2E1NCBI
cM Map251.84NCBI
Api5
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr83100,833,417 - 100,858,580 (-)NCBIGRCr8
mRatBN7.2380,378,096 - 80,403,259 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl380,378,096 - 80,403,264 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx383,847,551 - 83,871,239 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0392,446,619 - 92,470,303 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0390,289,305 - 90,312,964 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0383,310,878 - 83,336,053 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl383,310,884 - 83,335,960 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0390,010,495 - 90,035,670 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4378,819,632 - 78,844,710 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.1378,716,055 - 78,741,216 (-)NCBI
Celera379,572,457 - 79,597,535 (-)NCBICelera
Cytogenetic Map3q31NCBI
API5
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2945,529,815 - 45,562,403 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11145,539,563 - 45,572,154 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01143,279,024 - 43,311,602 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11143,759,414 - 43,791,975 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1143,759,414 - 43,791,975 (+)Ensemblpanpan1.1panPan2
API5
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11826,326,387 - 26,355,580 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1826,327,920 - 26,355,585 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha1826,016,307 - 26,045,407 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.01826,950,978 - 26,980,076 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl1826,950,978 - 26,980,114 (-)EnsemblROS_Cfam_1.0 Ensembl
UNSW_CanFamBas_1.01826,106,836 - 26,135,908 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01826,718,679 - 26,747,755 (-)NCBIUU_Cfam_GSD_1.0
Api5
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440494723,117,515 - 23,141,542 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365625,229,174 - 5,253,181 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049365625,229,157 - 5,253,175 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
API5
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl218,962,270 - 18,994,240 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1218,962,262 - 18,994,235 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2220,666,705 - 20,698,683 (-)NCBISscrofa10.2Sscrofa10.2susScr3
API5
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1122,029,723 - 22,064,553 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl122,034,317 - 22,064,541 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_023666038119,264,311 - 119,296,422 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Api5
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_0046247674,591,562 - 4,614,365 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression


Sequence


RefSeq Acc Id: ENSCLAT00000020194   ⟹   ENSCLAP00000020001
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0 EnsemblNW_0049554224,121,837 - 4,149,471 (-)Ensembl
RefSeq Acc Id: XM_005384088   ⟹   XP_005384145
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_0049554224,121,913 - 4,149,241 (-)NCBI
Sequence:
RefSeq Acc Id: XM_005384089   ⟹   XP_005384146
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_0049554224,121,913 - 4,149,242 (-)NCBI
Sequence:
Protein Sequences
Protein RefSeqs XP_005384145 (Get FASTA)   NCBI Sequence Viewer  
  XP_005384146 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSCLAP00000020001
  ENSCLAP00000020001.1
RefSeq Acc Id: XP_005384146   ⟸   XM_005384089
- Peptide Label: isoform X2
- Sequence:
RefSeq Acc Id: XP_005384145   ⟸   XM_005384088
- Peptide Label: isoform X1
- UniProtKB: A0A8C2VUV1 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSCLAP00000020001   ⟸   ENSCLAT00000020194


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSCLAG00000013707 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSCLAT00000020194 ENTREZGENE
  ENSCLAT00000020194.1 UniProtKB/TrEMBL
Gene3D-CATH 1.25.10.10 UniProtKB/TrEMBL
InterPro API5 UniProtKB/TrEMBL
  ARM-like UniProtKB/TrEMBL
  ARM-type_fold UniProtKB/TrEMBL
NCBI Gene Api5 ENTREZGENE
PANTHER APOPTOSIS INHIBITOR 5 UniProtKB/TrEMBL
  PTHR12758 UniProtKB/TrEMBL
Pfam API5 UniProtKB/TrEMBL
Superfamily-SCOP SSF48371 UniProtKB/TrEMBL
UniProt A0A8C2VUV1 ENTREZGENE, UniProtKB/TrEMBL