Alg1 (ALG1 chitobiosyldiphosphodolichol beta-mannosyltransferase) - Rat Genome Database

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Gene: Alg1 (ALG1 chitobiosyldiphosphodolichol beta-mannosyltransferase) Chinchilla lanigera
Analyze
Symbol: Alg1
Name: ALG1 chitobiosyldiphosphodolichol beta-mannosyltransferase
RGD ID: 8745840
Description: ENCODES a protein that exhibits chitobiosyldiphosphodolichol beta-mannosyltransferase activity (ortholog); INVOLVED IN dolichol-linked oligosaccharide biosynthetic process (ortholog); protein N-linked glycosylation (ortholog); ASSOCIATED WITH brain disease (ortholog); congenital disorder of glycosylation (ortholog); congenital disorder of glycosylation Ig (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: ALG1, chitobiosyldiphosphodolichol beta-mannosyltransferase; chitobiosyldiphosphodolichol beta-mannosyltransferase
RGD Orthologs
Human
Mouse
Rat
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: ChiLan1.0 - Chinchilla ChiLan1.0 Assembly
Position:
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0NW_00495544212,476,055 - 12,487,613 (-)NCBIChiLan1.0ChiLan1.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. Transitive Annotation Pipeline Automated assignment of GO, PW and RDO ISO annotations across species
2. OMIM Disease Annotation Pipeline OMIM Disease Annotation Pipeline
Additional References at PubMed
PMID:30032202  


Genomics

Comparative Map Data
Alg1
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0NW_00495544212,476,055 - 12,487,613 (-)NCBIChiLan1.0ChiLan1.0
ALG1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38165,071,843 - 5,087,379 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl165,033,702 - 5,087,379 (+)EnsemblGRCh38hg38GRCh38
GRCh37165,121,844 - 5,137,380 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 36165,061,821 - 5,075,589 (+)NCBINCBI36Build 36hg18NCBI36
Build 34165,061,820 - 5,075,588NCBI
Celera165,331,197 - 5,346,774 (+)NCBICelera
Cytogenetic Map16p13.3NCBI
HuRef165,087,870 - 5,103,521 (+)NCBIHuRef
CHM1_1165,122,998 - 5,138,572 (+)NCBICHM1_1
T2T-CHM13v2.0165,101,343 - 5,116,882 (+)NCBIT2T-CHM13v2.0
Alg1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39165,051,410 - 5,062,773 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl165,051,485 - 5,062,776 (+)EnsemblGRCm39 Ensembl
GRCm38165,233,621 - 5,244,909 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl165,233,621 - 5,244,912 (+)EnsemblGRCm38mm10GRCm38
MGSCv37165,233,714 - 5,245,000 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36165,148,957 - 5,160,217 (+)NCBIMGSCv36mm8
Celera165,866,634 - 5,877,920 (+)NCBICelera
Cytogenetic Map16A1NCBI
cM Map162.51NCBI
Alg1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81010,853,014 - 10,863,250 (-)NCBIGRCr8
mRatBN7.21010,346,538 - 10,356,768 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1010,346,536 - 10,356,750 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1015,053,182 - 15,063,415 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01014,541,989 - 14,552,225 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01010,210,983 - 10,221,211 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01010,539,930 - 10,550,178 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1010,539,930 - 10,550,138 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0109,309,794 - 9,320,036 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41010,460,098 - 10,470,815 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11010,460,451 - 10,470,817 (-)NCBI
Celera109,312,603 - 9,322,805 (-)NCBICelera
Cytogenetic Map10q12NCBI
ALG1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2185,599,767 - 5,613,556 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1169,390,094 - 9,403,661 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0163,995,711 - 4,009,476 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1165,158,944 - 5,173,880 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl165,158,979 - 5,173,189 (+)Ensemblpanpan1.1panPan2
ALG1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1636,369,246 - 36,380,963 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha637,760,207 - 37,772,690 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0636,570,485 - 36,583,025 (-)NCBIROS_Cfam_1.0
UMICH_Zoey_3.1636,369,136 - 36,381,672 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0636,260,375 - 36,272,839 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0636,660,572 - 36,673,095 (-)NCBIUU_Cfam_GSD_1.0
Alg1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024409344107,102,694 - 107,112,434 (+)NCBIHiC_Itri_2
SpeTri2.0NW_0049365304,948,130 - 4,957,306 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
ALG1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1337,323,725 - 37,340,401 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2338,329,047 - 38,345,724 (-)NCBISscrofa10.2Sscrofa10.2susScr3
ALG1
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.154,739,019 - 4,752,292 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl54,739,048 - 4,753,119 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366606825,901,661 - 25,915,115 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Alg1
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046248242,863,983 - 2,874,953 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046248242,846,573 - 2,875,459 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression


Sequence


Reference Sequences
RefSeq Acc Id: XM_005391248   ⟹   XP_005391305
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_00495544212,476,525 - 12,487,613 (-)NCBI
Sequence:
RefSeq Acc Id: XM_005391249   ⟹   XP_005391306
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_00495544212,476,055 - 12,487,612 (-)NCBI
Sequence:
Protein Sequences
Protein RefSeqs XP_005391305 (Get FASTA)   NCBI Sequence Viewer  
  XP_005391306 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSCLAP00000018915
  ENSCLAP00000018915.1
Reference Protein Sequences
RefSeq Acc Id: XP_005391306   ⟸   XM_005391249
- Peptide Label: isoform X2
- UniProtKB: A0A8C2VPY6 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_005391305   ⟸   XM_005391248
- Peptide Label: isoform X1
- Sequence:
Protein Domains
Glycosyl transferase family


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSCLAG00000012952 ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSCLAT00000019100 ENTREZGENE
  ENSCLAT00000019100.1 UniProtKB/TrEMBL
Gene3D-CATH Glycogen Phosphorylase B UniProtKB/TrEMBL
InterPro ALG1-like UniProtKB/TrEMBL
  Glyco_trans_1 UniProtKB/TrEMBL
NCBI Gene Alg1 ENTREZGENE
PANTHER CHITOBIOSYLDIPHOSPHODOLICHOL BETA-MANNOSYLTRANSFERASE UniProtKB/TrEMBL
  PTHR13036 UniProtKB/TrEMBL
Pfam Glycos_transf_1 UniProtKB/TrEMBL
Superfamily-SCOP UDP-Glycosyltransferase/glycogen phosphorylase UniProtKB/TrEMBL
UniProt A0A8C2VPY6 ENTREZGENE, UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2019-01-29 Alg1  ALG1 chitobiosyldiphosphodolichol beta-mannosyltransferase    ALG1, chitobiosyldiphosphodolichol beta-mannosyltransferase  Symbol and/or name change 5135510 APPROVED