Oca2 (OCA2 melanosomal transmembrane protein) - Rat Genome Database

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Gene: Oca2 (OCA2 melanosomal transmembrane protein) Chinchilla lanigera
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Symbol: Oca2
Name: OCA2 melanosomal transmembrane protein
RGD ID: 8741852
Description: ENCODES a protein that exhibits chloride channel activity (ortholog); INVOLVED IN cell population proliferation (ortholog); developmental pigmentation (ortholog); lysosomal lumen pH elevation (ortholog); ASSOCIATED WITH actinic keratosis (ortholog); Albinism (ortholog); Angelman syndrome (ortholog); FOUND IN endoplasmic reticulum membrane (ortholog); endosome membrane (ortholog); lysosomal membrane (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: oculocutaneous albinism II
RGD Orthologs
Human
Mouse
Rat
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: ChiLan1.0 - Chinchilla ChiLan1.0 Assembly
NCBI Annotation Information: Annotation category: partial on reference assembly
Position:
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049555331,522,795 - 1,797,116 (+)EnsemblChiLan1.0
ChiLan1.0NW_0049555331,522,878 - 1,796,673 (+)NCBIChiLan1.0ChiLan1.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


References

References - curated
# Reference Title Reference Citation
1. Transitive Annotation Pipeline Automated assignment of GO, PW and RDO ISO annotations across species
2. OMIM Disease Annotation Pipeline OMIM Disease Annotation Pipeline
Additional References at PubMed
PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
Oca2
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049555331,522,795 - 1,797,116 (+)EnsemblChiLan1.0
ChiLan1.0NW_0049555331,522,878 - 1,796,673 (+)NCBIChiLan1.0ChiLan1.0
OCA2
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381527,719,008 - 28,099,315 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1527,754,875 - 28,099,315 (-)EnsemblGRCh38hg38GRCh38
GRCh371528,000,021 - 28,344,461 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 361525,673,616 - 26,018,053 (-)NCBINCBI36Build 36hg18NCBI36
Build 341525,673,627 - 26,018,061NCBI
Celera156,159,864 - 6,486,885 (-)NCBICelera
Cytogenetic Map15q12-q13.1NCBI
HuRef156,126,617 - 6,454,008 (-)NCBIHuRef
CHM1_11527,949,611 - 28,294,279 (-)NCBICHM1_1
T2T-CHM13v2.01525,461,432 - 25,841,842 (-)NCBIT2T-CHM13v2.0
Oca2
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39755,889,341 - 56,186,266 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl755,889,508 - 56,186,266 (+)EnsemblGRCm39 Ensembl
GRCm38756,239,593 - 56,536,518 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl756,239,760 - 56,536,518 (+)EnsemblGRCm38mm10GRCm38
MGSCv37763,495,141 - 63,791,887 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36756,107,790 - 56,404,536 (+)NCBIMGSCv36mm8
Celera753,578,935 - 53,870,549 (+)NCBICelera
Cytogenetic Map7B5NCBI
cM Map733.44NCBI
Oca2
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81116,252,026 - 116,581,838 (+)NCBIGRCr8
mRatBN7.21107,116,278 - 107,446,093 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1107,116,278 - 107,446,074 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1112,507,382 - 112,829,919 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01120,979,244 - 121,301,798 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01114,228,212 - 114,550,755 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01114,661,970 - 114,987,433 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1114,679,537 - 114,987,433 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01115,720,909 - 115,991,040 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
Rnor_5.01115,683,593 - 115,683,857 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
Celera1101,324,224 - 101,633,838 (+)NCBICelera
Cytogenetic Map1q22NCBI
OCA2
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2167,182,788 - 7,564,648 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11510,824,412 - 11,169,708 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0151,811,728 - 2,192,018 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11525,181,417 - 25,523,703 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1525,181,386 - 25,523,774 (-)Ensemblpanpan1.1panPan2
OCA2
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1332,361,825 - 32,713,631 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl332,361,517 - 32,713,572 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha334,967,334 - 35,404,320 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0332,621,251 - 33,055,320 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl332,621,221 - 33,055,306 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1332,155,153 - 32,595,979 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0332,404,163 - 32,842,419 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0332,515,314 - 32,948,430 (+)NCBIUU_Cfam_GSD_1.0
Oca2
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024408640120,764,374 - 121,104,104 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_00493647138,612,427 - 38,952,199 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_00493647138,612,450 - 38,952,150 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
OCA2
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1556,657,616 - 56,869,918 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11556,657,648 - 56,869,920 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.215156,879,489 - 156,880,169 (-)NCBISscrofa10.2Sscrofa10.2susScr3
Sscrofa10.21563,929,054 - 64,060,069 (+)NCBISscrofa10.2Sscrofa10.2susScr3
OCA2
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12654,022,346 - 54,429,991 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl2654,039,197 - 54,352,774 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366605436,822,407 - 37,218,415 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Oca2
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046248962,163,468 - 2,415,432 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046248962,163,043 - 2,432,016 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts XM_013507666 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AGCD01070363 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AGCD01070364 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AGCD01070365 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AGCD01070366 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AGCD01070367 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AGCD01070368 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AGCD01070369 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AGCD01070370 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AGCD01070371 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AGCD01070372 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AGCD01070373 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AGCD01070374 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AGCD01070375 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AGCD01070376 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AGCD01070377 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AGCD01070378 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AGCD01070379 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  GBDF01195937 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

RefSeq Acc Id: ENSCLAT00000003691   ⟹   ENSCLAP00000003617
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0 EnsemblNW_0049555331,522,795 - 1,797,116 (+)Ensembl
RefSeq Acc Id: XM_013507666   ⟹   XP_013363120
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_0049555331,522,878 - 1,796,673 (+)NCBI
Sequence:
Protein Sequences
Protein RefSeqs XP_013363120 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSCLAP00000003617
  ENSCLAP00000003617.1
RefSeq Acc Id: XP_013363120   ⟸   XM_013507666
- UniProtKB: A0A8C2URE6 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSCLAP00000003617   ⟸   ENSCLAT00000003691
Protein Domains
Citrate transporter-like


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSCLAG00000002580 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSCLAT00000003691 ENTREZGENE
  ENSCLAT00000003691.1 UniProtKB/TrEMBL
InterPro Cit_transptr-like_dom UniProtKB/TrEMBL
NCBI Gene Oca2 ENTREZGENE
PANTHER P PROTEIN UniProtKB/TrEMBL
  P PROTEIN UniProtKB/TrEMBL
Pfam CitMHS UniProtKB/TrEMBL
UniProt A0A8C2URE6 ENTREZGENE, UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2016-08-03 Oca2  OCA2 melanosomal transmembrane protein    oculocutaneous albinism II  Symbol and/or name change 5135510 APPROVED