Fmod (fibromodulin) - Rat Genome Database

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Gene: Fmod (fibromodulin) Chinchilla lanigera
Analyze
Symbol: Fmod
Name: fibromodulin
RGD ID: 8736827
Description: INVOLVED IN skin development (ortholog); ASSOCIATED WITH Diabetic Nephropathies (ortholog); familial adult myoclonic epilepsy 5 (ortholog); gastrointestinal stromal tumor (ortholog); FOUND IN collagen-containing extracellular matrix (ortholog); extracellular region (ortholog)
Type: protein-coding
RefSeq Status: MODEL
RGD Orthologs
Human
Mouse
Rat
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: ChiLan1.0 - Chinchilla ChiLan1.0 Assembly
Position:
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495540639,328,743 - 39,340,258 (-)EnsemblChiLan1.0
ChiLan1.0NW_00495540639,328,743 - 39,340,113 (-)NCBIChiLan1.0ChiLan1.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

References

References - curated
# Reference Title Reference Citation
1. Transitive Annotation Pipeline Automated assignment of GO, PW and RDO ISO annotations across species
Additional References at PubMed
PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
Fmod
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495540639,328,743 - 39,340,258 (-)EnsemblChiLan1.0
ChiLan1.0NW_00495540639,328,743 - 39,340,113 (-)NCBIChiLan1.0ChiLan1.0
FMOD
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381203,340,628 - 203,351,122 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1203,340,628 - 203,351,758 (-)EnsemblGRCh38hg38GRCh38
GRCh371203,309,756 - 203,320,250 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 361201,576,375 - 201,586,912 (-)NCBINCBI36Build 36hg18NCBI36
Build 341200,041,413 - 200,049,060NCBI
Celera1176,439,022 - 176,449,562 (-)NCBICelera
Cytogenetic Map1q32.1NCBI
HuRef1174,474,902 - 174,485,714 (-)NCBIHuRef
CHM1_11204,732,638 - 204,743,449 (-)NCBICHM1_1
T2T-CHM13v2.01202,603,493 - 202,613,991 (-)NCBIT2T-CHM13v2.0
Fmod
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391133,964,992 - 133,976,018 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1133,964,992 - 133,976,015 (+)EnsemblGRCm39 Ensembl
GRCm381134,037,254 - 134,048,280 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1134,037,254 - 134,048,277 (+)EnsemblGRCm38mm10GRCm38
MGSCv371135,934,092 - 135,944,854 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361135,853,926 - 135,864,688 (+)NCBIMGSCv36mm8
Celera1136,653,909 - 136,670,078 (+)NCBICelera
Cytogenetic Map1E4NCBI
cM Map158.09NCBI
Fmod
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81348,045,567 - 48,056,184 (+)NCBIGRCr8
mRatBN7.21345,493,517 - 45,504,134 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1345,493,517 - 45,504,133 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1348,101,962 - 48,112,556 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01349,390,009 - 49,400,605 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01346,654,575 - 46,665,165 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01350,874,886 - 50,885,503 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1350,873,605 - 50,885,563 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01355,927,583 - 55,939,041 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41346,987,714 - 46,998,331 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11347,001,756 - 47,012,373 (+)NCBI
Celera1345,822,144 - 45,832,470 (+)NCBICelera
RH 3.4 Map13184.4RGD
Cytogenetic Map13q13NCBI
FMOD
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2146,026,552 - 46,037,305 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1145,993,588 - 46,004,297 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01178,942,472 - 178,953,158 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11183,236,412 - 183,247,057 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1183,238,130 - 183,244,074 (-)Ensemblpanpan1.1panPan2
FMOD
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.138102,106 - 112,267 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl38103,230 - 112,154 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha38192,095 - 202,277 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.03898,889 - 109,072 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl3898,893 - 108,988 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.13891,412 - 101,593 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.038485,490 - 495,671 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.038699,365 - 709,547 (-)NCBIUU_Cfam_GSD_1.0
Fmod
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440934472,036,724 - 72,047,975 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365671,271,252 - 1,282,841 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049365671,271,401 - 1,282,651 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
FMOD
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl964,063,001 - 64,073,858 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1964,062,995 - 64,073,853 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2970,356,603 - 70,367,308 (-)NCBISscrofa10.2Sscrofa10.2susScr3
FMOD
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12525,992,006 - 26,002,909 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl2525,992,228 - 26,003,109 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366605526,768,097 - 26,779,048 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Fmod
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046248077,507,449 - 7,518,636 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046248077,507,670 - 7,518,076 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression


Sequence


Reference Sequences
RefSeq Acc Id: ENSCLAT00000019547   ⟹   ENSCLAP00000019358
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0 EnsemblNW_00495540639,328,743 - 39,337,626 (-)Ensembl
RefSeq Acc Id: ENSCLAT00000019548   ⟹   ENSCLAP00000019359
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0 EnsemblNW_00495540639,330,704 - 39,340,258 (-)Ensembl
RefSeq Acc Id: XM_005375266   ⟹   XP_005375323
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_00495540639,328,743 - 39,340,113 (-)NCBI
Sequence:
Protein Sequences
Protein RefSeqs XP_005375323 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSCLAP00000019358.1
  ENSCLAP00000019359
  ENSCLAP00000019359.1
Reference Protein Sequences
RefSeq Acc Id: XP_005375323   ⟸   XM_005375266
- UniProtKB: A0A8C2VR14 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSCLAP00000019358   ⟸   ENSCLAT00000019547
RefSeq Acc Id: ENSCLAP00000019359   ⟸   ENSCLAT00000019548
Protein Domains
LRRNT


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSCLAG00000013270 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSCLAT00000019547.1 UniProtKB/TrEMBL
  ENSCLAT00000019548 ENTREZGENE
  ENSCLAT00000019548.1 UniProtKB/TrEMBL
Gene3D-CATH 3.80.10.10 UniProtKB/TrEMBL
InterPro Leu-rich_rpt UniProtKB/TrEMBL
  Leu-rich_rpt_typical-subtyp UniProtKB/TrEMBL
  LRR_dom_sf UniProtKB/TrEMBL
  LRRNT UniProtKB/TrEMBL
NCBI Gene Fmod ENTREZGENE
PANTHER AGAP008170-PA UniProtKB/TrEMBL
  PTHR45712:SF4 UniProtKB/TrEMBL
Pfam LRR_1 UniProtKB/TrEMBL
  LRR_8 UniProtKB/TrEMBL
  LRRNT UniProtKB/TrEMBL
PROSITE LRR UniProtKB/TrEMBL
SMART LRR_BAC UniProtKB/TrEMBL
  LRR_TYP UniProtKB/TrEMBL
  LRRNT UniProtKB/TrEMBL
Superfamily-SCOP L domain-like UniProtKB/TrEMBL
UniProt A0A8C2VR14 ENTREZGENE, UniProtKB/TrEMBL