Eif4e3 (eukaryotic translation initiation factor 4E family member 3) - Rat Genome Database

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Gene: Eif4e3 (eukaryotic translation initiation factor 4E family member 3) Chinchilla lanigera
Analyze
Symbol: Eif4e3
Name: eukaryotic translation initiation factor 4E family member 3
RGD ID: 8727328
Description: ASSOCIATED WITH COVID-19 (ortholog); Experimental Liver Cirrhosis (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: eukaryotic translation initiation factor 4E type 3
RGD Orthologs
Human
Mouse
Rat
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: ChiLan1.0 - Chinchilla ChiLan1.0 Assembly
NCBI Annotation Information: Annotation category: partial on reference assembly
Position:
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495542116,354,282 - 16,419,304 (+)EnsemblChiLan1.0
ChiLan1.0NW_00495542116,354,282 - 16,520,422 (+)NCBIChiLan1.0ChiLan1.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. Transitive Annotation Pipeline Automated assignment of GO, PW and RDO ISO annotations across species
Additional References at PubMed
PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
Eif4e3
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495542116,354,282 - 16,419,304 (+)EnsemblChiLan1.0
ChiLan1.0NW_00495542116,354,282 - 16,520,422 (+)NCBIChiLan1.0ChiLan1.0
EIF4E3
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38371,659,363 - 71,754,773 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl371,675,414 - 71,754,773 (-)EnsemblGRCh38hg38GRCh38
GRCh37371,724,565 - 71,803,924 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 36371,814,568 - 71,885,465 (-)NCBINCBI36Build 36hg18NCBI36
Build 34371,814,567 - 71,885,465NCBI
Celera371,659,031 - 71,734,517 (-)NCBICelera
Cytogenetic Map3p13NCBI
HuRef371,730,725 - 71,780,383 (-)NCBIHuRef
CHM1_1371,680,022 - 71,755,333 (-)NCBICHM1_1
T2T-CHM13v2.0371,698,509 - 71,794,043 (-)NCBIT2T-CHM13v2.0
Eif4e3
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39699,599,008 - 99,669,834 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl699,602,096 - 99,643,732 (-)EnsemblGRCm39 Ensembl
GRCm38699,621,879 - 99,692,873 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl699,625,135 - 99,666,771 (-)EnsemblGRCm38mm10GRCm38
MGSCv37699,575,131 - 99,616,765 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36699,590,600 - 99,632,234 (-)NCBIMGSCv36mm8
Celera6101,489,380 - 101,530,927 (-)NCBICelera
Cytogenetic Map6D3NCBI
cM Map645.98NCBI
Eif4e3
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr84133,709,802 - 133,858,398 (-)NCBIGRCr8
mRatBN7.24132,258,502 - 132,301,808 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl4132,258,502 - 132,301,808 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx4137,675,414 - 137,719,126 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.04133,456,200 - 133,499,910 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.04132,074,463 - 132,118,181 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.04132,068,581 - 132,111,092 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl4132,068,598 - 132,111,079 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.04196,560,131 - 196,602,330 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.44134,470,883 - 134,514,084 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera4121,118,126 - 121,161,071 (-)NCBICelera
Cytogenetic Map4q34NCBI
EIF4E3
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2271,641,978 - 71,684,653 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1371,646,766 - 71,689,440 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0371,617,040 - 71,694,523 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1372,975,451 - 73,049,525 (-)NCBIpanpan1.1PanPan1.1panPan2
EIF4E3
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.12020,299,757 - 20,349,561 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl2020,327,676 - 20,438,998 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha2020,277,217 - 20,327,043 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.02020,334,599 - 20,384,614 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl2020,308,954 - 21,026,250 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.12020,024,761 - 20,065,042 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.02020,373,429 - 20,413,727 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.02020,436,369 - 20,486,225 (+)NCBIUU_Cfam_GSD_1.0
Eif4e3
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_0244049423,229,927 - 3,286,977 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049366033,227,138 - 3,245,939 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049366033,228,091 - 3,285,311 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
EIF4E3
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1353,083,645 - 53,124,240 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11353,080,200 - 53,152,335 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21358,771,253 - 58,816,633 (-)NCBISscrofa10.2Sscrofa10.2susScr3
EIF4E3
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12232,635,144 - 32,708,932 (-)NCBIChlSab1.1ChlSab1.1chlSab2
Vero_WHO_p1.0NW_023666041134,070,942 - 134,144,820 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Eif4e3
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046247736,219,199 - 6,267,512 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046247736,047,763 - 6,264,641 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression

RNA-SEQ Expression


Sequence


Ensembl Acc Id: ENSCLAT00000005476   ⟹   ENSCLAP00000005380
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0 EnsemblNW_00495542116,354,282 - 16,417,394 (+)Ensembl
Ensembl Acc Id: ENSCLAT00000005477   ⟹   ENSCLAP00000005381
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0 EnsemblNW_00495542116,392,735 - 16,419,304 (+)Ensembl
RefSeq Acc Id: XM_005383789   ⟹   XP_005383846
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_00495542116,354,282 - 16,419,304 (+)NCBI
Sequence:
RefSeq Acc Id: XM_013513679   ⟹   XP_013369133
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_00495542116,354,282 - 16,520,422 (+)NCBI
Sequence:
Protein Sequences
Protein RefSeqs XP_005383846 (Get FASTA)   NCBI Sequence Viewer  
  XP_013369133 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSCLAP00000005380
  ENSCLAP00000005380.1
  ENSCLAP00000005381.1
RefSeq Acc Id: XP_005383846   ⟸   XM_005383789
- Peptide Label: isoform X2
- UniProtKB: A0A8C2UZ18 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_013369133   ⟸   XM_013513679
- Peptide Label: isoform X1
- Sequence:
Ensembl Acc Id: ENSCLAP00000005381   ⟸   ENSCLAT00000005477
Ensembl Acc Id: ENSCLAP00000005380   ⟸   ENSCLAT00000005476


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSCLAG00000003818 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSCLAT00000005476 ENTREZGENE
  ENSCLAT00000005476.1 UniProtKB/TrEMBL
  ENSCLAT00000005477.1 UniProtKB/TrEMBL
Gene3D-CATH 3.30.760.10 UniProtKB/TrEMBL
InterPro TIF_eIF4e-like UniProtKB/TrEMBL
  TIF_eIF_4E UniProtKB/TrEMBL
NCBI Gene Eif4e3 ENTREZGENE
PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 4E TYPE 3 UniProtKB/TrEMBL
  PTHR11960 UniProtKB/TrEMBL
Pfam IF4E UniProtKB/TrEMBL
Superfamily-SCOP SSF55418 UniProtKB/TrEMBL
UniProt A0A8C2UVE4_CHILA UniProtKB/TrEMBL
  A0A8C2UZ18 ENTREZGENE, UniProtKB/TrEMBL