Cfap53 (cilia and flagella associated protein 53) - Rat Genome Database

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Gene: Cfap53 (cilia and flagella associated protein 53) Chinchilla lanigera
Analyze
Symbol: Cfap53
Name: cilia and flagella associated protein 53
RGD ID: 8712765
Description: INVOLVED IN cerebrospinal fluid circulation (ortholog); cilium assembly (ortholog); determination of left/right symmetry (ortholog); ASSOCIATED WITH dextrocardia (ortholog); genetic disease (ortholog); hypoplastic left heart syndrome (ortholog); FOUND IN 9+0 motile cilium (ortholog); 9+2 motile cilium (ortholog); axonemal A tubule inner sheath (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: Ccdc11; cilia- and flagella-associated protein 53; coiled-coil domain containing 11
RGD Orthologs
Human
Mouse
Rat
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: ChiLan1.0 - Chinchilla ChiLan1.0 Assembly
Position:
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495540235,295,007 - 35,318,799 (-)EnsemblChiLan1.0
ChiLan1.0NW_00495540235,295,007 - 35,318,800 (-)NCBIChiLan1.0ChiLan1.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. Transitive Annotation Pipeline Automated assignment of GO, PW and RDO ISO annotations across species

Genomics

Comparative Map Data
Cfap53
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495540235,295,007 - 35,318,799 (-)EnsemblChiLan1.0
ChiLan1.0NW_00495540235,295,007 - 35,318,800 (-)NCBIChiLan1.0ChiLan1.0
CFAP53
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381850,227,193 - 50,266,495 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1850,227,193 - 50,266,495 (-)EnsemblGRCh38hg38GRCh38
GRCh371847,753,563 - 47,792,865 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 361846,007,561 - 46,046,863 (-)NCBINCBI36Build 36hg18NCBI36
Build 341846,007,561 - 46,046,863NCBI
Celera1844,610,119 - 44,649,420 (-)NCBICelera
Cytogenetic Map18q21.1NCBI
HuRef1844,607,962 - 44,647,310 (-)NCBIHuRef
CHM1_11847,749,177 - 47,788,454 (-)NCBICHM1_1
T2T-CHM13v2.01850,428,917 - 50,468,237 (-)NCBIT2T-CHM13v2.0
Cfap53
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391874,416,171 - 74,493,055 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1874,416,161 - 74,493,057 (+)EnsemblGRCm39 Ensembl
GRCm381874,283,100 - 74,359,984 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1874,283,090 - 74,359,986 (+)EnsemblGRCm38mm10GRCm38
MGSCv371874,442,754 - 74,519,638 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361874,408,469 - 74,485,351 (+)NCBIMGSCv36mm8
Celera1875,512,454 - 75,592,877 (+)NCBICelera
Cytogenetic Map18E2NCBI
cM Map1850.7NCBI
Cfap53
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81870,159,900 - 70,227,543 (+)NCBIGRCr8
mRatBN7.21867,884,651 - 67,955,873 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1867,869,855 - 67,952,318 (+)EnsemblmRatBN7.2 Ensembl
Rnor_6.01870,263,290 - 70,330,420 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1870,263,359 - 70,329,907 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01869,404,834 - 69,472,256 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41871,083,103 - 71,151,732 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11871,156,303 - 71,224,840 (+)NCBI
Celera1866,062,639 - 66,130,812 (+)NCBICelera
Cytogenetic Map18q12.2NCBI
CFAP53
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21767,745,110 - 67,794,635 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11853,437,712 - 53,487,223 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01843,597,731 - 43,647,238 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11846,955,364 - 46,994,771 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1846,955,364 - 46,994,771 (-)Ensemblpanpan1.1panPan2
CFAP53
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1778,612,226 - 78,649,518 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl778,597,746 - 78,651,472 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha778,016,600 - 78,053,886 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0778,676,021 - 78,712,393 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl778,676,053 - 78,714,335 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1778,388,670 - 78,425,967 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0778,421,092 - 78,457,453 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0778,705,819 - 78,742,179 (+)NCBIUU_Cfam_GSD_1.0
Cfap53
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440494437,629,614 - 37,657,164 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_00493649712,874,266 - 12,896,739 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_00493649712,868,583 - 12,896,322 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
CFAP53
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl199,850,562 - 99,900,136 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1199,848,184 - 99,900,001 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21109,565,317 - 109,589,418 (-)NCBISscrofa10.2Sscrofa10.2susScr3
CFAP53
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11830,690,451 - 30,731,711 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl1830,691,006 - 30,725,354 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_0236660504,837,720 - 4,878,740 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Cfap53
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462477813,839,310 - 13,891,714 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462477813,841,227 - 13,891,946 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression


Sequence


RefSeq Acc Id: ENSCLAT00000012356   ⟹   ENSCLAP00000012214
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0 EnsemblNW_00495540235,295,007 - 35,318,799 (-)Ensembl
RefSeq Acc Id: XM_005372915   ⟹   XP_005372972
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_00495540235,295,007 - 35,318,799 (-)NCBI
Sequence:
RefSeq Acc Id: XM_013510706   ⟹   XP_013366160
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_00495540235,295,007 - 35,318,800 (-)NCBI
Sequence:
Protein Sequences
Protein RefSeqs XP_005372972 (Get FASTA)   NCBI Sequence Viewer  
  XP_013366160 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSCLAP00000012214
  ENSCLAP00000012214.1
RefSeq Acc Id: XP_005372972   ⟸   XM_005372915
- Peptide Label: isoform X1
- UniProtKB: A0A8C2V9G4 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_013366160   ⟸   XM_013510706
- Peptide Label: isoform X2
- Sequence:
RefSeq Acc Id: ENSCLAP00000012214   ⟸   ENSCLAT00000012356

Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSCLAG00000008426 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSCLAT00000012356 ENTREZGENE
  ENSCLAT00000012356.1 UniProtKB/TrEMBL
InterPro CFAP53/TCHP UniProtKB/TrEMBL
  TPH_dom UniProtKB/TrEMBL
NCBI Gene Ccdc11 ENTREZGENE
PANTHER PTHR31183 UniProtKB/TrEMBL
  PTHR31183:SF1 UniProtKB/TrEMBL
Pfam TPH UniProtKB/TrEMBL
UniProt A0A8C2V9G4 ENTREZGENE, UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2015-08-25 Cfap53  cilia and flagella associated protein 53  Ccdc11  coiled-coil domain containing 11  Symbol and/or name change 5135510 APPROVED