Apoa5 (apolipoprotein A5) - Rat Genome Database

Name: Apoa5
Creator: Rat Genome Database
License: Creative Commons CC BY 4.0
Keywords: Rat Gene RGD Genome

Gene: Apoa5 (apolipoprotein A5) Chinchilla lanigera

Analyze

Symbol:

Apoa5

Name:

apolipoprotein A5

RGD ID:

8711623

Description:

ENCODES a protein that exhibits enzyme activator activity (ortholog); enzyme binding (ortholog); heparin binding (ortholog); INVOLVED IN acylglycerol homeostasis (ortholog); animal organ regeneration (ortholog); cholesterol homeostasis (ortholog); PARTICIPATES IN lipoprotein metabolic pathway; ASSOCIATED WITH cerebral infarction (ortholog); Chromosome 11, Partial Trisomy 11q (ortholog); coronary artery disease (ortholog); FOUND IN chylomicron (ortholog); extracellular region (ortholog); extracellular space (ortholog)

Type:

protein-coding

RefSeq Status:

MODEL

Previously known as:

apolipoprotein A-V

RGD Orthologs

Alliance Genes

More Info

more info ...

More Info

Species	Gene symbol and name	Data Source	Assertion derived from	less info ...
Orthologs ¹				less info ...
Homo sapiens (human):	APOA5 (apolipoprotein A5)	NCBI	Ortholog
Mus musculus (house mouse):	Apoa5 (apolipoprotein A-V)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Rattus norvegicus (Norway rat):	Apoa5 (apolipoprotein A5)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Pan paniscus (bonobo/pygmy chimpanzee):	APOA5 (apolipoprotein A5)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Canis lupus familiaris (dog):	APOA5 (apolipoprotein A5)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Ictidomys tridecemlineatus (thirteen-lined ground squirrel):	Apoa5 (apolipoprotein A5)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Sus scrofa (pig):	APOA5 (apolipoprotein A5)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chlorocebus sabaeus (green monkey):	APOA5 (apolipoprotein A5)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Heterocephalus glaber (naked mole-rat):	Apoa5 (apolipoprotein A5)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline

Latest Assembly:

ChiLan1.0 - Chinchilla ChiLan1.0 Assembly

Position:

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955412	18,129,603 - 18,131,115 (-)	Ensembl	ChiLan1.0
ChiLan1.0	NW_004955412	18,128,861 - 18,131,752 (-)	NCBI	ChiLan1.0	ChiLan1.0

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Annotation Click to see Annotation Detail View

Disease Annotations Click to see Annotation Detail View

cerebral infarction (ISO)

Chromosome 11, Partial Trisomy 11q (ISO)

coronary artery disease (ISO)

Dwarfism (ISO)

familial apolipoprotein A5 deficiency (ISO)

familial lipoprotein lipase deficiency (ISO)

genetic disease (ISO)

hyperlipoproteinemia type III (ISO)

hyperlipoproteinemia type IV (ISO)

hyperlipoproteinemia type V (ISO)

Hyperlipoproteinemias (ISO)

Hypertriglyceridemia (ISO)

HYPERTRIGLYCERIDEMIA 1 (ISO)

hypothyroidism (ISO)

intellectual disability (ISO)

Metabolic Syndrome (ISO)

nephronophthisis 15 (ISO)

obesity (ISO)

Pediatric Obesity (ISO)

type 2 diabetes mellitus (ISO)

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

acylglycerol homeostasis (ISO)

animal organ regeneration (ISO)

cholesterol homeostasis (ISO)

lipid transport (ISO)

positive regulation of fatty acid biosynthetic process (ISO)

positive regulation of lipid catabolic process (ISO)

positive regulation of triglyceride catabolic process (ISO)

positive regulation of very-low-density lipoprotein particle remodeling (ISO)

response to hormone (ISO)

tissue regeneration (ISO)

triglyceride catabolic process (ISO)

triglyceride homeostasis (ISO)

triglyceride metabolic process (ISO)

triglyceride-rich lipoprotein particle remodeling (ISO)

Cellular Component

chylomicron (ISO)

extracellular region (ISO)

extracellular space (ISO)

high-density lipoprotein particle (ISO)

low-density lipoprotein particle (ISO)

very-low-density lipoprotein particle (ISO)

Molecular Function

enzyme activator activity (ISO)

enzyme binding (ISO)

heparin binding (ISO)

lipase activator activity (ISO)

lipase binding (ISO)

lipid binding (ISO)

lipoprotein lipase activator activity (ISO)

lipoprotein particle receptor binding (ISO)

low-density lipoprotein particle receptor binding (ISO)

phosphatidylcholine binding (ISO)

phospholipid binding (ISO)

protein binding (ISO)

Molecular Pathway Annotations Click to see Annotation Detail View

lipoprotein metabolic pathway (ISO)

References

References - curated

#	Reference Title	Reference Citation
1.	Transitive Annotation Pipeline	Automated assignment of GO, PW and RDO ISO annotations across species
2.	OMIM Disease Annotation Pipeline	OMIM Disease Annotation Pipeline

Additional References at PubMed

PMID:22301074	PMID:30032202

Genomics

Comparative Map Data

Apoa5
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955412	18,129,603 - 18,131,115 (-)	Ensembl	ChiLan1.0
ChiLan1.0	NW_004955412	18,128,861 - 18,131,752 (-)	NCBI	ChiLan1.0	ChiLan1.0

APOA5
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	11	116,789,367 - 116,792,420 (-)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	11	116,789,367 - 116,792,420 (-)	Ensembl	GRCh38		hg38	GRCh38
GRCh37	11	116,660,083 - 116,663,136 (-)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	11	116,165,296 - 116,167,794 (-)	NCBI	NCBI36	Build 36	hg18	NCBI36
Build 34	11	116,165,296 - 116,167,794	NCBI
Celera	11	113,815,476 - 113,818,526 (-)	NCBI		Celera
Cytogenetic Map	11	q23.3	NCBI
HuRef	11	112,592,079 - 112,595,129 (-)	NCBI		HuRef
CHM1_1	11	116,544,726 - 116,547,776 (-)	NCBI		CHM1_1
T2T-CHM13v2.0	11	116,803,991 - 116,807,044 (-)	NCBI		T2T-CHM13v2.0

Apoa5
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	9	46,179,906 - 46,183,219 (+)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	9	46,179,931 - 46,183,217 (+)	Ensembl		GRCm39 Ensembl
GRCm38	9	46,268,608 - 46,271,921 (+)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	9	46,268,633 - 46,271,919 (+)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	9	46,076,691 - 46,080,002 (+)	NCBI	GRCm37	MGSCv37	mm9	NCBIm37
MGSCv36	9	46,019,603 - 46,022,914 (+)	NCBI		MGSCv36	mm8
Celera	9	43,557,616 - 43,560,927 (+)	NCBI		Celera
Cytogenetic Map	9	A5.2	NCBI
cM Map	9	25.37	NCBI

Apoa5
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	8	55,446,329 - 55,460,509 (+)	NCBI		GRCr8
mRatBN7.2	8	46,561,180 - 46,563,818 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	8	46,561,229 - 46,563,816 (+)	Ensembl		mRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx	8	52,062,457 - 52,065,145 (+)	NCBI	Rnor_SHR	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	8	50,341,227 - 50,343,915 (+)	NCBI	Rnor_SHRSP	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	8	48,205,503 - 48,208,191 (+)	NCBI	Rnor_WKY	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	8	50,559,079 - 50,561,720 (+)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	8	50,559,126 - 50,561,736 (+)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	8	49,185,041 - 49,187,682 (+)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	8	49,253,538 - 49,255,777 (+)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
RGSC_v3.1	8	49,265,341 - 49,267,579 (+)	NCBI
Celera	8	46,142,946 - 46,145,584 (+)	NCBI		Celera
Cytogenetic Map	8	q22	NCBI

APOA5
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	9	117,490,147 - 117,492,677 (-)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	11	118,595,361 - 118,597,891 (-)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	11	111,625,403 - 111,627,932 (-)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	11	115,559,231 - 115,562,286 (-)	NCBI	panpan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	11	115,559,231 - 115,562,286 (-)	Ensembl	panpan1.1		panPan2

APOA5
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	5	16,774,117 - 16,777,535 (+)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	5	16,774,501 - 16,777,768 (+)	Ensembl	CanFam3.1		canFam3	CanFam3.1
Dog10K_Boxer_Tasha	5	16,826,641 - 16,829,696 (+)	NCBI		Dog10K_Boxer_Tasha
ROS_Cfam_1.0	5	16,721,181 - 16,724,236 (+)	NCBI		ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	5	16,721,199 - 16,723,685 (+)	Ensembl		ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	5	16,858,043 - 16,861,098 (+)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	5	16,760,620 - 16,763,675 (+)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	5	16,803,753 - 16,806,810 (+)	NCBI		UU_Cfam_GSD_1.0

Apoa5
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024404947	99,147,591 - 99,149,935 (-)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936542	2,069,683 - 2,071,353 (-)	Ensembl	SpeTri2.0	SpeTri2.0 Ensembl
SpeTri2.0	NW_004936542	2,069,683 - 2,071,344 (-)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

APOA5
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	9	44,178,606 - 44,180,885 (-)	Ensembl	Sscrofa11.1		susScr11	Sscrofa11.1
Sscrofa11.1	9	44,177,834 - 44,180,880 (-)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	9	49,251,674 - 49,254,883 (-)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

APOA5
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	1	108,154,880 - 108,158,998 (-)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	1	108,155,641 - 108,157,375 (-)	Ensembl	ChlSab1.1	ChlSab1.1 Ensembl	chlSab2
Vero_WHO_p1.0	NW_023666043	17,891,675 - 17,894,161 (+)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Apoa5
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624784	12,213,744 - 12,216,026 (-)	Ensembl	HetGla_female_1.0	HetGla_female_1.0 Ensembl	hetGla2
HetGla 1.0	NW_004624784	12,213,205 - 12,216,039 (-)	NCBI	HetGla_female_1.0	HetGla 1.0	hetGla2

Expression

Sequence

Nucleotide Sequences


RefSeq Transcripts	XM_005378185	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_005378186	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_013511206	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	AGCD01012926	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

RefSeq Acc Id:

ENSCLAT00000019191 ⟹ ENSCLAP00000019006

Type:

CODING

Position:

Chinchilla Assembly	Chr	Position (strand)	Source
ChiLan1.0 Ensembl	NW_004955412	18,129,603 - 18,131,115 (-)	Ensembl

RefSeq Acc Id:

XM_005378185 ⟹ XP_005378242

Type:

CODING

Position:

Chinchilla Assembly	Chr	Position (strand)	Source
ChiLan1.0	NW_004955412	18,128,861 - 18,131,544 (-)	NCBI

Sequence:

show sequence

TGATCCTGGTGCCTGGGTTCTAGGTTCTGAGGAGCAGAGTGGTGGGGGAACCAGTGGAAGACAG
AGCTCCATCTTCCCTGCTATGTGACAGAGATGAGAAAAGAGAGCCCTGCTCCATGTTTGGGGAA
GATACTTTTTCCTTCCTAACCTAGGTTGATCCACTGAGGCAGGCGTTGTGCTGCTGAGCTATAT
CCCAGGCCCTGCTTCTTCATTCTGACTTGGCCTCCATTCATCTTCCTTCTCAGAGTGCATATGG
CAAACATGGCTGCAGTCCTCACCTGGGCTCTGGCCCTGCTCTCAGTGTGTTCAGCCACTCAGGC
AAGGAAAGGCTTCTGGGACTACTTCAGCCAGAGCATCAGGAACAAGGGTGTGATGGAGCAGATC
CAGCAGCAGGCCCAGGACCACGTGAGGCTCAAGGACAGCCTCAAGCAGGAACTCAGCAATATGA
ACACATTCCTGGAGAAGTTGGGCTCCCTGAGTGGGCAGGTGAAGGATCGTCCTCAGCTGGCCCC
AGCCCAGGATGTGCGGCAGCAGCTGCAGGAGGAGCTGGAGCAGGTGAAGGCTCGCCTGCAGCCC
TACATGGCAGAGGTACACAAGCTGGTGGGCTCTAACTTGGAGGGGCTGCGGCAGCAGCTGAAGC
CCTACACAGTAGAGCTAATGGAACAGGTGGCCCTGCGTGTACAGGAGCTGCAGGAGCACTTGCG
TGTGGTTGGGGAAGGTACAAAAGCCCAGGTGCTGGGCGGCATGGACGAGGCACTGGGCCTGCTG
CAAGACATGCCCAGCCGCGTGCTGCACCATACCGGCCGTGTCAAAGATCTCTTCCACCCGTACG
CCGAGCGCCTGGTGAGCGGCATCGGGCGCCATGTACAGGAACTGCACCGCAGCGTGGCCCCGCA
TGCTGCTGCCAGCCCAGTCCGGCTCAGCCGCTGTGTTCAGGCACTCTCGCACAAGCTCACGCTC
AAGGCCAAGGCTTTGCACGCGGGCATCCAGCAGAACCTGGACCAGCTAGGCAAAGGGCTCAGTG
CCTTTGTCCGCACCAGCACAGACGGGGCTGAGGAGGGGGCCAGCCTGGACCCCCAGTTGCTTTC
CGAGGAAGTGCGCCAGCGACTCCAGGCTTTCCGCCAGGACACCTTCGCGCAAATCGCCGCTTTC
ACACGCGCCATTGACCATGAGACAGAGGAGATCCACCAGCAGCTGGCGCCACCCCCACCAGGCC
ACATTGGTTTTGCCCCTGAGTTCCCAGAAGCGGATGGTGGCAAGGCCCTGAGTAAGCTGCAGGC
CCGTCTTGACGATCTGTGGGAAGACATCACCTACAGCCTTCATGACCAGAGCCACAGAGATCTG
GGAGAACCCTGAGGGCCGACATGTGCTGGTTCACTCCCTAGCTCCTGGTCTGAGAGGCCCAACA
CTTGCGCTTCTCCATGGCCTGCCGGGTGAGGGTGGAGGATTCTGTGCAGGAGAGGTGAGGCCAC
CAGGGGGTGCTGTCCCTGGCATAACCATCCTCGACTTCCCCATCCAAATGCATTACACTCACTA
GGCTTTGCAAACCAGCTTTCCGTACTCATTTGGTCATTCTCAGGAATTTCAATATTCAGGGGCG
GAGGGAGTAGGGAGGGAGAGAGACCGTATATCTGCAAGCCTGTGTGAGATGCTACTAGAAGCCT
GTGCCACTGCCTGTGCCACCCCAAAGTGTGCTTCCTGTCACTTCTGGATGCCTGCTGGTCACTG
CTACAGTTGGCCCATAGAGAGAAGCTCTTGTTTCCCCAGGGCCACCATGACAGCTTTTGTTGGG
CCAACCGAAGAGATCAAGGAGGAAAATACATGGGAAGAACACATGAGGATGTGTGTCTATCCCT
GCTGGCTGTGATGCTGGTGGGTGTGAATGGTGGGGACAGTGATGGGCTGGGGCAGGATCTGTAT
TTCCGAATATAGCTCTGCACCTAAGTAAGGGACCAAGCCCTCCAAACTGAGGGGGCTTCTTAAA
ATCATCTGGAGAGCATAGTATGTGCCCTCCTCAGCTCCAGCCCCTTCTTCCTGATTCCCAGACT
GAAGTCTAGACTTCTGCTCAAATGAAATAGATGCTTATGATGGAAGCTTC

hide sequence

RefSeq Acc Id:

XM_005378186 ⟹ XP_005378243

Type:

CODING

Position:

Chinchilla Assembly	Chr	Position (strand)	Source
ChiLan1.0	NW_004955412	18,128,861 - 18,131,544 (-)	NCBI

Sequence:

show sequence

TGATCCTGGTGCCTGGGTTCTAGGTTCTGAGGAGCAGAGTGGTGGGGGAACCAGTGGAAGACAG
AGCTCCATCTTCCCTGCTATGTGACAGAGATGAGAAAAGAGAGCCCTGCTCCATGTTTGGGGAA
GATACTTTTTCCTTCCTAACCTAGGTTGATCCACTGAGAGTGCATATGGCAAACATGGCTGCAG
TCCTCACCTGGGCTCTGGCCCTGCTCTCAGTGTGTTCAGCCACTCAGGCAAGGAAAGGCTTCTG
GGACTACTTCAGCCAGAGCATCAGGAACAAGGGTGTGATGGAGCAGATCCAGCAGCAGGCCCAG
GACCACGTGAGGCTCAAGGACAGCCTCAAGCAGGAACTCAGCAATATGAACACATTCCTGGAGA
AGTTGGGCTCCCTGAGTGGGCAGGTGAAGGATCGTCCTCAGCTGGCCCCAGCCCAGGATGTGCG
GCAGCAGCTGCAGGAGGAGCTGGAGCAGGTGAAGGCTCGCCTGCAGCCCTACATGGCAGAGGTA
CACAAGCTGGTGGGCTCTAACTTGGAGGGGCTGCGGCAGCAGCTGAAGCCCTACACAGTAGAGC
TAATGGAACAGGTGGCCCTGCGTGTACAGGAGCTGCAGGAGCACTTGCGTGTGGTTGGGGAAGG
TACAAAAGCCCAGGTGCTGGGCGGCATGGACGAGGCACTGGGCCTGCTGCAAGACATGCCCAGC
CGCGTGCTGCACCATACCGGCCGTGTCAAAGATCTCTTCCACCCGTACGCCGAGCGCCTGGTGA
GCGGCATCGGGCGCCATGTACAGGAACTGCACCGCAGCGTGGCCCCGCATGCTGCTGCCAGCCC
AGTCCGGCTCAGCCGCTGTGTTCAGGCACTCTCGCACAAGCTCACGCTCAAGGCCAAGGCTTTG
CACGCGGGCATCCAGCAGAACCTGGACCAGCTAGGCAAAGGGCTCAGTGCCTTTGTCCGCACCA
GCACAGACGGGGCTGAGGAGGGGGCCAGCCTGGACCCCCAGTTGCTTTCCGAGGAAGTGCGCCA
GCGACTCCAGGCTTTCCGCCAGGACACCTTCGCGCAAATCGCCGCTTTCACACGCGCCATTGAC
CATGAGACAGAGGAGATCCACCAGCAGCTGGCGCCACCCCCACCAGGCCACATTGGTTTTGCCC
CTGAGTTCCCAGAAGCGGATGGTGGCAAGGCCCTGAGTAAGCTGCAGGCCCGTCTTGACGATCT
GTGGGAAGACATCACCTACAGCCTTCATGACCAGAGCCACAGAGATCTGGGAGAACCCTGAGGG
CCGACATGTGCTGGTTCACTCCCTAGCTCCTGGTCTGAGAGGCCCAACACTTGCGCTTCTCCAT
GGCCTGCCGGGTGAGGGTGGAGGATTCTGTGCAGGAGAGGTGAGGCCACCAGGGGGTGCTGTCC
CTGGCATAACCATCCTCGACTTCCCCATCCAAATGCATTACACTCACTAGGCTTTGCAAACCAG
CTTTCCGTACTCATTTGGTCATTCTCAGGAATTTCAATATTCAGGGGCGGAGGGAGTAGGGAGG
GAGAGAGACCGTATATCTGCAAGCCTGTGTGAGATGCTACTAGAAGCCTGTGCCACTGCCTGTG
CCACCCCAAAGTGTGCTTCCTGTCACTTCTGGATGCCTGCTGGTCACTGCTACAGTTGGCCCAT
AGAGAGAAGCTCTTGTTTCCCCAGGGCCACCATGACAGCTTTTGTTGGGCCAACCGAAGAGATC
AAGGAGGAAAATACATGGGAAGAACACATGAGGATGTGTGTCTATCCCTGCTGGCTGTGATGCT
GGTGGGTGTGAATGGTGGGGACAGTGATGGGCTGGGGCAGGATCTGTATTTCCGAATATAGCTC
TGCACCTAAGTAAGGGACCAAGCCCTCCAAACTGAGGGGGCTTCTTAAAATCATCTGGAGAGCA
TAGTATGTGCCCTCCTCAGCTCCAGCCCCTTCTTCCTGATTCCCAGACTGAAGTCTAGACTTCT
GCTCAAATGAAATAGATGCTTATGATGGAAGCTTC

hide sequence

RefSeq Acc Id:

XM_013511206 ⟹ XP_013366660

Type:

CODING

Position:

Chinchilla Assembly	Chr	Position (strand)	Source
ChiLan1.0	NW_004955412	18,128,861 - 18,131,752 (-)	NCBI

Sequence:

show sequence

TCTGCAACCAGAACTGAGCAGGCAGGCGTTGTGCTGCTGAGCTATATCCCAGGCCCTGCTTCTT
CATTCTGACTTGGCCTCCATTCATCTTCCTTCTCAGAGTGCATATGGCAAACATGGCTGCAGTC
CTCACCTGGGCTCTGGCCCTGCTCTCAGTGTGTTCAGCCACTCAGGCAAGGAAAGGCTTCTGGG
ACTACTTCAGCCAGAGCATCAGGAACAAGGGTGTGATGGAGCAGATCCAGCAGCAGGCCCAGGA
CCACGTGAGGCTCAAGGACAGCCTCAAGCAGGAACTCAGCAATATGAACACATTCCTGGAGAAG
TTGGGCTCCCTGAGTGGGCAGGTGAAGGATCGTCCTCAGCTGGCCCCAGCCCAGGATGTGCGGC
AGCAGCTGCAGGAGGAGCTGGAGCAGGTGAAGGCTCGCCTGCAGCCCTACATGGCAGAGGTACA
CAAGCTGGTGGGCTCTAACTTGGAGGGGCTGCGGCAGCAGCTGAAGCCCTACACAGTAGAGCTA
ATGGAACAGGTGGCCCTGCGTGTACAGGAGCTGCAGGAGCACTTGCGTGTGGTTGGGGAAGGTA
CAAAAGCCCAGGTGCTGGGCGGCATGGACGAGGCACTGGGCCTGCTGCAAGACATGCCCAGCCG
CGTGCTGCACCATACCGGCCGTGTCAAAGATCTCTTCCACCCGTACGCCGAGCGCCTGGTGAGC
GGCATCGGGCGCCATGTACAGGAACTGCACCGCAGCGTGGCCCCGCATGCTGCTGCCAGCCCAG
TCCGGCTCAGCCGCTGTGTTCAGGCACTCTCGCACAAGCTCACGCTCAAGGCCAAGGCTTTGCA
CGCGGGCATCCAGCAGAACCTGGACCAGCTAGGCAAAGGGCTCAGTGCCTTTGTCCGCACCAGC
ACAGACGGGGCTGAGGAGGGGGCCAGCCTGGACCCCCAGTTGCTTTCCGAGGAAGTGCGCCAGC
GACTCCAGGCTTTCCGCCAGGACACCTTCGCGCAAATCGCCGCTTTCACACGCGCCATTGACCA
TGAGACAGAGGAGATCCACCAGCAGCTGGCGCCACCCCCACCAGGCCACATTGGTTTTGCCCCT
GAGTTCCCAGAAGCGGATGGTGGCAAGGCCCTGAGTAAGCTGCAGGCCCGTCTTGACGATCTGT
GGGAAGACATCACCTACAGCCTTCATGACCAGAGCCACAGAGATCTGGGAGAACCCTGAGGGCC
GACATGTGCTGGTTCACTCCCTAGCTCCTGGTCTGAGAGGCCCAACACTTGCGCTTCTCCATGG
CCTGCCGGGTGAGGGTGGAGGATTCTGTGCAGGAGAGGTGAGGCCACCAGGGGGTGCTGTCCCT
GGCATAACCATCCTCGACTTCCCCATCCAAATGCATTACACTCACTAGGCTTTGCAAACCAGCT
TTCCGTACTCATTTGGTCATTCTCAGGAATTTCAATATTCAGGGGCGGAGGGAGTAGGGAGGGA
GAGAGACCGTATATCTGCAAGCCTGTGTGAGATGCTACTAGAAGCCTGTGCCACTGCCTGTGCC
ACCCCAAAGTGTGCTTCCTGTCACTTCTGGATGCCTGCTGGTCACTGCTACAGTTGGCCCATAG
AGAGAAGCTCTTGTTTCCCCAGGGCCACCATGACAGCTTTTGTTGGGCCAACCGAAGAGATCAA
GGAGGAAAATACATGGGAAGAACACATGAGGATGTGTGTCTATCCCTGCTGGCTGTGATGCTGG
TGGGTGTGAATGGTGGGGACAGTGATGGGCTGGGGCAGGATCTGTATTTCCGAATATAGCTCTG
CACCTAAGTAAGGGACCAAGCCCTCCAAACTGAGGGGGCTTCTTAAAATCATCTGGAGAGCATA
GTATGTGCCCTCCTCAGCTCCAGCCCCTTCTTCCTGATTCCCAGACTGAAGTCTAGACTTCTGC
TCAAATGAAATAGATGCTTATGATGGAAGCTTC

hide sequence

Protein Sequences


Protein RefSeqs	XP_005378242	(Get FASTA)	NCBI Sequence Viewer
	XP_005378243	(Get FASTA)	NCBI Sequence Viewer
	XP_013366660	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSCLAP00000019006
	ENSCLAP00000019006.1

RefSeq Acc Id:

XP_005378243 ⟸ XM_005378186

- UniProtKB:

A0A8C2VUE4 (UniProtKB/TrEMBL)

- Sequence:

show sequence

MANMAAVLTWALALLSVCSATQARKGFWDYFSQSIRNKGVMEQIQQQAQDHVRLKDSLKQELSN
MNTFLEKLGSLSGQVKDRPQLAPAQDVRQQLQEELEQVKARLQPYMAEVHKLVGSNLEGLRQQL
KPYTVELMEQVALRVQELQEHLRVVGEGTKAQVLGGMDEALGLLQDMPSRVLHHTGRVKDLFHP
YAERLVSGIGRHVQELHRSVAPHAAASPVRLSRCVQALSHKLTLKAKALHAGIQQNLDQLGKGL
SAFVRTSTDGAEEGASLDPQLLSEEVRQRLQAFRQDTFAQIAAFTRAIDHETEEIHQQLAPPPP
GHIGFAPEFPEADGGKALSKLQARLDDLWEDITYSLHDQSHRDLGEP

hide sequence

RefSeq Acc Id:

XP_005378242 ⟸ XM_005378185

- UniProtKB:

A0A8C2VUE4 (UniProtKB/TrEMBL)

- Sequence:

show sequence

MANMAAVLTWALALLSVCSATQARKGFWDYFSQSIRNKGVMEQIQQQAQDHVRLKDSLKQELSN
MNTFLEKLGSLSGQVKDRPQLAPAQDVRQQLQEELEQVKARLQPYMAEVHKLVGSNLEGLRQQL
KPYTVELMEQVALRVQELQEHLRVVGEGTKAQVLGGMDEALGLLQDMPSRVLHHTGRVKDLFHP
YAERLVSGIGRHVQELHRSVAPHAAASPVRLSRCVQALSHKLTLKAKALHAGIQQNLDQLGKGL
SAFVRTSTDGAEEGASLDPQLLSEEVRQRLQAFRQDTFAQIAAFTRAIDHETEEIHQQLAPPPP
GHIGFAPEFPEADGGKALSKLQARLDDLWEDITYSLHDQSHRDLGEP

hide sequence

RefSeq Acc Id:

XP_013366660 ⟸ XM_013511206

- UniProtKB:

A0A8C2VUE4 (UniProtKB/TrEMBL)

- Sequence:

show sequence

MANMAAVLTWALALLSVCSATQARKGFWDYFSQSIRNKGVMEQIQQQAQDHVRLKDSLKQELSN
MNTFLEKLGSLSGQVKDRPQLAPAQDVRQQLQEELEQVKARLQPYMAEVHKLVGSNLEGLRQQL
KPYTVELMEQVALRVQELQEHLRVVGEGTKAQVLGGMDEALGLLQDMPSRVLHHTGRVKDLFHP
YAERLVSGIGRHVQELHRSVAPHAAASPVRLSRCVQALSHKLTLKAKALHAGIQQNLDQLGKGL
SAFVRTSTDGAEEGASLDPQLLSEEVRQRLQAFRQDTFAQIAAFTRAIDHETEEIHQQLAPPPP
GHIGFAPEFPEADGGKALSKLQARLDDLWEDITYSLHDQSHRDLGEP

hide sequence

RefSeq Acc Id:

ENSCLAP00000019006 ⟸ ENSCLAT00000019191

Additional Information

External Database Links

Database	Acc Id	Source(s)
Ensembl Genes	ENSCLAG00000013015	Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript	ENSCLAT00000019191	ENTREZGENE
	ENSCLAT00000019191.1	UniProtKB/TrEMBL
Gene3D-CATH	Apolipoprotein	UniProtKB/TrEMBL
InterPro	ApoA_E	UniProtKB/TrEMBL
NCBI Gene	Apoa5	ENTREZGENE
PANTHER	APOLIPOPROTEIN	UniProtKB/TrEMBL
	APOLIPOPROTEIN A-V	UniProtKB/TrEMBL
Pfam	Apolipoprotein	UniProtKB/TrEMBL
Superfamily-SCOP	Apolipoprotein A-I	UniProtKB/TrEMBL
UniProt	A0A8C2VUE4	ENTREZGENE, UniProtKB/TrEMBL

Nomenclature History

Date	Current Symbol	Current Name	Previous Symbol	Previous Name	Description	Reference	Status
2016-08-03	Apoa5	apolipoprotein A5		apolipoprotein A-V	Symbol and/or name change	5135510	APPROVED

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

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Imported Disease Annotations - CTD

Imported Disease Annotations - OMIM

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Imported Disease Annotations - ClinVar

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