Tmem108 (transmembrane protein 108) - Rat Genome Database

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Gene: Tmem108 (transmembrane protein 108) Chinchilla lanigera
Analyze
Symbol: Tmem108
Name: transmembrane protein 108
RGD ID: 8704996
Description: INVOLVED IN cellular response to brain-derived neurotrophic factor stimulus (ortholog); dendrite extension (ortholog); dentate gyrus development (ortholog); ASSOCIATED WITH alkaptonuria (ortholog); nephronophthisis (ortholog); Primary Lymphedema with Myelodysplasia (ortholog); FOUND IN axon (ortholog); early endosome (ortholog); endosome membrane (ortholog)
Type: protein-coding
RefSeq Status: MODEL
RGD Orthologs
Human
Mouse
Rat
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: ChiLan1.0 - Chinchilla ChiLan1.0 Assembly
Position:
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049555015,147,375 - 5,468,417 (-)EnsemblChiLan1.0
ChiLan1.0NW_0049555015,148,821 - 5,475,073 (-)NCBIChiLan1.0ChiLan1.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


References

References - curated
# Reference Title Reference Citation
1. Transitive Annotation Pipeline Automated assignment of GO, PW and RDO ISO annotations across species
Additional References at PubMed
PMID:30032202  


Genomics

Comparative Map Data
Tmem108
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049555015,147,375 - 5,468,417 (-)EnsemblChiLan1.0
ChiLan1.0NW_0049555015,148,821 - 5,475,073 (-)NCBIChiLan1.0ChiLan1.0
TMEM108
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh383133,038,391 - 133,397,775 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl3133,038,391 - 133,397,775 (+)EnsemblGRCh38hg38GRCh38
GRCh373132,757,235 - 133,116,619 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 363134,239,943 - 134,597,748 (+)NCBINCBI36Build 36hg18NCBI36
Celera3131,182,649 - 131,543,167 (+)NCBICelera
Cytogenetic Map3q22.1NCBI
HuRef3130,137,369 - 130,497,019 (+)NCBIHuRef
CHM1_13132,720,187 - 133,079,967 (+)NCBICHM1_1
T2T-CHM13v2.03135,782,799 - 136,142,525 (+)NCBIT2T-CHM13v2.0
Tmem108
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm399103,360,135 - 103,639,099 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl9103,360,146 - 103,639,036 (-)EnsemblGRCm39 Ensembl
GRCm389103,482,936 - 103,761,900 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl9103,482,947 - 103,761,837 (-)EnsemblGRCm38mm10GRCm38
MGSCv379103,385,266 - 103,664,167 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv369103,342,589 - 103,619,967 (-)NCBIMGSCv36mm8
Celera9103,034,734 - 103,314,283 (-)NCBICelera
Cytogenetic Map9F1NCBI
cM Map955.47NCBI
Tmem108
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr88112,944,925 - 113,238,996 (-)NCBIGRCr8
mRatBN7.28104,066,081 - 104,360,172 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl8104,066,078 - 104,360,094 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx8109,724,812 - 110,012,432 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.08107,923,985 - 108,211,619 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.08105,766,682 - 106,054,310 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.08111,968,568 - 112,265,623 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl8111,970,288 - 111,984,572 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.08111,359,492 - 111,611,861 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.48108,526,665 - 108,559,580 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.18108,546,130 - 108,650,112 (-)NCBI
Celera8103,441,328 - 103,731,916 (-)NCBICelera
Cytogenetic Map8q32NCBI
TMEM108
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v22130,983,382 - 131,346,059 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan13130,988,111 - 131,350,787 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v03130,105,824 - 130,468,122 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.13137,581,678 - 137,944,660 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl3137,775,339 - 137,944,660 (+)Ensemblpanpan1.1panPan2
TMEM108
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.12329,992,038 - 30,331,791 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl2329,992,021 - 30,396,840 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha2329,967,097 - 30,310,435 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.02330,506,730 - 30,851,144 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl2330,506,730 - 30,849,923 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.12330,201,891 - 30,545,052 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.02330,259,585 - 30,603,127 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.02330,506,960 - 30,850,288 (+)NCBIUU_Cfam_GSD_1.0
Tmem108
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440560269,566,242 - 69,869,313 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365296,326,702 - 6,629,898 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049365296,326,775 - 6,629,247 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
TMEM108
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1374,180,198 - 74,555,928 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11374,524,122 - 74,556,327 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21381,988,526 - 82,020,540 (+)NCBISscrofa10.2Sscrofa10.2susScr3
TMEM108
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11556,921,064 - 57,248,199 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl1556,921,069 - 57,200,901 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366604129,907,018 - 30,234,916 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Tmem108
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046247309,522,166 - 9,683,365 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046247309,314,308 - 9,683,324 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression


Sequence


RefSeq Acc Id: ENSCLAT00000008676   ⟹   ENSCLAP00000008549
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0 EnsemblNW_0049555015,147,375 - 5,468,417 (-)Ensembl
RefSeq Acc Id: ENSCLAT00000008677   ⟹   ENSCLAP00000008550
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0 EnsemblNW_0049555015,147,375 - 5,468,417 (-)Ensembl
RefSeq Acc Id: ENSCLAT00000008678   ⟹   ENSCLAP00000008551
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0 EnsemblNW_0049555015,147,375 - 5,434,771 (-)Ensembl
RefSeq Acc Id: ENSCLAT00000008679   ⟹   ENSCLAP00000008552
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0 EnsemblNW_0049555015,147,375 - 5,414,253 (-)Ensembl
RefSeq Acc Id: ENSCLAT00000008680   ⟹   ENSCLAP00000008553
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0 EnsemblNW_0049555015,147,375 - 5,344,371 (-)Ensembl
RefSeq Acc Id: XM_005406820   ⟹   XP_005406877
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_0049555015,148,821 - 5,475,073 (-)NCBI
Sequence:
RefSeq Acc Id: XM_005406821   ⟹   XP_005406878
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_0049555015,148,821 - 5,475,073 (-)NCBI
Sequence:
RefSeq Acc Id: XM_013505802   ⟹   XP_013361256
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_0049555015,148,821 - 5,475,073 (-)NCBI
Sequence:
RefSeq Acc Id: XM_013505803   ⟹   XP_013361257
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_0049555015,148,821 - 5,475,073 (-)NCBI
Sequence:
RefSeq Acc Id: XM_013505804   ⟹   XP_013361258
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_0049555015,148,821 - 5,475,073 (-)NCBI
Sequence:
RefSeq Acc Id: XM_013505805   ⟹   XP_013361259
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_0049555015,148,821 - 5,475,073 (-)NCBI
Sequence:
RefSeq Acc Id: XM_013505806   ⟹   XP_013361260
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_0049555015,148,821 - 5,475,073 (-)NCBI
Sequence:
RefSeq Acc Id: XM_013505807   ⟹   XP_013361261
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_0049555015,148,821 - 5,475,073 (-)NCBI
Sequence:
RefSeq Acc Id: XM_013505808   ⟹   XP_013361262
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_0049555015,148,821 - 5,474,962 (-)NCBI
Sequence:
RefSeq Acc Id: XP_005406878   ⟸   XM_005406821
- UniProtKB: A0A8C2V2Y1 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_005406877   ⟸   XM_005406820
- UniProtKB: A0A8C2V2Y1 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_013361261   ⟸   XM_013505807
- UniProtKB: A0A8C2V2Y1 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_013361260   ⟸   XM_013505806
- UniProtKB: A0A8C2V2Y1 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_013361259   ⟸   XM_013505805
- UniProtKB: A0A8C2V2Y1 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_013361258   ⟸   XM_013505804
- UniProtKB: A0A8C2V2Y1 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_013361256   ⟸   XM_013505802
- UniProtKB: A0A8C2V2Y1 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_013361257   ⟸   XM_013505803
- UniProtKB: A0A8C2V2Y1 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_013361262   ⟸   XM_013505808
- UniProtKB: A0A8C2V2Y1 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSCLAP00000008550   ⟸   ENSCLAT00000008677
RefSeq Acc Id: ENSCLAP00000008551   ⟸   ENSCLAT00000008678
RefSeq Acc Id: ENSCLAP00000008552   ⟸   ENSCLAT00000008679
RefSeq Acc Id: ENSCLAP00000008549   ⟸   ENSCLAT00000008676
RefSeq Acc Id: ENSCLAP00000008553   ⟸   ENSCLAT00000008680


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSCLAG00000005981 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSCLAT00000008676 ENTREZGENE
  ENSCLAT00000008676.1 UniProtKB/TrEMBL
  ENSCLAT00000008677 ENTREZGENE
  ENSCLAT00000008677.1 UniProtKB/TrEMBL
  ENSCLAT00000008678 ENTREZGENE
  ENSCLAT00000008678.1 UniProtKB/TrEMBL
  ENSCLAT00000008679.1 UniProtKB/TrEMBL
  ENSCLAT00000008680.1 UniProtKB/TrEMBL
InterPro TMEM108 UniProtKB/TrEMBL
NCBI Gene Tmem108 ENTREZGENE
PANTHER PTHR28673 UniProtKB/TrEMBL
  TRANSMEMBRANE PROTEIN 108 UniProtKB/TrEMBL
Pfam TMEM108 UniProtKB/TrEMBL
UniProt A0A8C2V0Q4_CHILA UniProtKB/TrEMBL
  A0A8C2V2Y1 ENTREZGENE, UniProtKB/TrEMBL