ZNF519P3 (zinc finger protein 519 pseudogene 3) - Rat Genome Database

Send us a Message
Submit Data |  Help |  Video Tutorials |  News |  Publications |  Download |  REST API |  Citing RGD |  Contact   
Search RGD Grant Resources Citing RGD About Us Contact Us
Genes Variants Community Projects QTLs Strains Markers Genome Information Ontologies Cell Lines References Download Submit Data
OntoMate (Literature Search) JBrowse (Genome Browser) Synteny Browser (VCMap) Variant Visualizer Multi-Ontology Enrichment (MOET) Gene-Ortholog Location Finder (GOLF) InterViewer (Protein-Protein Interactions) PhenoMiner (Quatitative Phenotypes) Gene Annotator OLGA (Gene List Generator) AllianceMine GViewer (Genome Viewer)
Aging & Age-Related Disease Cancer & Neoplastic Disease Cardiovascular Disease Coronavirus Disease Developmental Disease Diabetes Hematologic Disease Immune & Inflammatory Disease Infectious Disease Liver Disease Neurological Disease Obesity & Metabolic Syndrome Renal Disease Respiratory Disease Sensory Organ Disease
Find Models   new Genetic Models Autism Models Rat PhenoMiner (Quantitative Phenotypes) Chinchilla PhenoMiner Expected Ranges (Quantitative Phenotype) PhenoMiner Term Comparison Hybrid Rat Diversity Panel Phenotypes Phenotypes in Other Animal Models Animal Husbandry Strain Medical Records Phylogenetics Strain Availability Calendar Rats 101 Submissions Photo Archive
Pathways
Rat Community Forum Directory of Rat Laboratories Video Tutorials News RGD Publications RGD Presentations Archive Nomenclature Guidelines Resource Links Laboratory Resources Employment Resources
Gene: ZNF519P3 (zinc finger protein 519 pseudogene 3) Homo sapiens
Analyze
Symbol: ZNF519P3
Name: zinc finger protein 519 pseudogene 3
RGD ID: 8662577
HGNC Page HGNC:50787
Description:
Type: pseudo (Ensembl: unprocessed_pseudogene)
RefSeq Status: INFERRED
Related Functional Gene: ZNF519  
Latest Assembly: GRCh38 - Human Genome Assembly GRCh38
Position:
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381521,911,520 - 21,913,041 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1521,911,559 - 21,912,590 (-)EnsemblGRCh38hg38GRCh38
GRCh371522,117,044 - 22,118,565 (-)NCBIGRCh37GRCh37hg19GRCh37
Cytogenetic Map15q11.2NCBI
HuRef15621,484 - 622,893 (-)NCBIHuRef
CHM1_11522,117,287 - 22,118,698 (-)NCBICHM1_1
JBrowse: View Region in Genome Browser (JBrowse)
Model


References

Genomics

miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:81
Count of miRNA genes:80
Interacting mature miRNAs:81
Transcripts:ENST00000557158
Prediction methods:Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system sensory system adipose tissue appendage
High
Medium
Low 1 2 6 1 2 1 1 5
Below cutoff 35 28 25 12 42 10 59 30 53 12 51 28 5 10 27

Sequence

Nucleotide Sequences
RefSeq Transcripts NG_022099 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AC183089 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Reference Sequences
RefSeq Acc Id: ENST00000557158
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1521,911,559 - 21,912,590 (-)Ensembl

Additional Information

Database Acc Id Source(s)
COSMIC ZNF519P3 COSMIC
Ensembl Genes ENSG00000258585 Ensembl
GTEx ENSG00000258585 GTEx
HGNC ID HGNC:50787 ENTREZGENE
Human Proteome Map ZNF519P3 Human Proteome Map
NCBI Gene ZNF519P3 ENTREZGENE