Gene: LINC01393 (long intergenic non-protein coding RNA 1393) Homo sapiens
Analyze
Symbol:
LINC01393
Name:
long intergenic non-protein coding RNA 1393
RGD ID:
8661322
HGNC Page
HGNC:50669
Description:
Type:
ncrna (Ensembl: lncRNA)
RefSeq Status:
VALIDATED
Allele / Splice:
See ClinVar data
Latest Assembly:
GRCh38 - Human Genome Assembly GRCh38
Position:
Human Assembly Chr Position (strand) Source Genome Browsers JBrowse NCBI UCSC Ensembl GRCh38 7 115,078,958 - 115,126,314 (+) NCBI GRCh38 GRCh38 hg38 GRCh38 GRCh38.p14 Ensembl 7 115,030,564 - 115,126,314 (+) Ensembl GRCh38 hg38 GRCh38 GRCh37 7 114,719,012 - 114,766,368 (+) NCBI GRCh37 GRCh37 hg19 GRCh37 Cytogenetic Map 7 q31.2 NCBI CHM1_1 7 114,652,386 - 114,699,750 (+) NCBI CHM1_1 T2T-CHM13v2.0 7 116,393,760 - 116,441,126 (+) NCBI T2T-CHM13v2.0
JBrowse:
View Region in Genome Browser (JBrowse)
Model
References
Genomics
miRNA Target Status
Predicted Target Of
Count of predictions: 223 Count of miRNA genes: 207 Interacting mature miRNAs: 213 Transcripts: ENST00000419905, ENST00000435981, ENST00000460471, ENST00000467677 Prediction methods: Miranda, Rnahybrid Result types: miRGate_prediction
Expression
RNA-SEQ Expression
High: > 1000 TPM value
Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM
Below Cutoff: < 0.5 TPM
alimentary part of gastrointestinal system
circulatory system
endocrine system
exocrine system
hemolymphoid system
hepatobiliary system
integumental system
musculoskeletal system
nervous system
renal system
reproductive system
respiratory system
sensory system
adipose tissue
appendage
entire extraembryonic component
High
Medium
1
1
Low
43
13
49
33
397
33
184
13
48
48
65
105
134
47
Below cutoff
2040
2323
1443
487
1117
350
3123
1512
1612
313
1101
1333
147
1042
1946
1
Sequence
RefSeq Acc Id:
ENST00000419905
Type:
CODING
Position:
Human Assembly Chr Position (strand) Source GRCh38.p14 Ensembl 7 115,078,998 - 115,125,791 (+) Ensembl
RefSeq Acc Id:
ENST00000435981
Type:
CODING
Position:
Human Assembly Chr Position (strand) Source GRCh38.p14 Ensembl 7 115,078,958 - 115,126,314 (+) Ensembl
RefSeq Acc Id:
ENST00000460471
Type:
CODING
Position:
Human Assembly Chr Position (strand) Source GRCh38.p14 Ensembl 7 115,118,212 - 115,122,225 (+) Ensembl
RefSeq Acc Id:
ENST00000467677
Type:
CODING
Position:
Human Assembly Chr Position (strand) Source GRCh38.p14 Ensembl 7 115,079,019 - 115,125,943 (+) Ensembl
RefSeq Acc Id:
ENST00000659423
Type:
CODING
Position:
Human Assembly Chr Position (strand) Source GRCh38.p14 Ensembl 7 115,124,708 - 115,125,937 (+) Ensembl
RefSeq Acc Id:
ENST00000660905
Type:
CODING
Position:
Human Assembly Chr Position (strand) Source GRCh38.p14 Ensembl 7 115,030,564 - 115,125,935 (+) Ensembl
RefSeq Acc Id:
ENST00000668211
Type:
CODING
Position:
Human Assembly Chr Position (strand) Source GRCh38.p14 Ensembl 7 115,031,355 - 115,125,935 (+) Ensembl
RefSeq Acc Id:
ENST00000669990
Type:
CODING
Position:
Human Assembly Chr Position (strand) Source GRCh38.p14 Ensembl 7 115,030,648 - 115,125,935 (+) Ensembl
RefSeq Acc Id:
NR_120521
RefSeq Status:
VALIDATED
Type:
NON-CODING
Position:
Human Assembly Chr Position (strand) Source GRCh38 7 115,078,958 - 115,126,314 (+) NCBI CHM1_1 7 114,652,386 - 114,699,750 (+) NCBI T2T-CHM13v2.0 7 116,393,760 - 116,441,126 (+) NCBI
Sequence:
AAGTGTCCTGTTATTAAAGGGAGTTTGACCCTCTCTTGCTGGCTTGCTCTCATGCTTTCTTGTC CTTCTGCCTTCTGCCATGGGATGACACAGCAAGAAGCCCCTTGCCAGATGTGGGCCTCTCGACC TTGGACTTCTTAGCTTCCAGAACTAGGAGCCATTGAAGAATACTGTTGTCCTATCCCAGAAGGA GCAAGCGGACAACACTGATATCCTGACCACTAACCATCCAGCACCACTTAAAGTTTTAAAAAGA ATAACAGAAAGAAAGAAGTGGCTGAAACCTAAATGCCATATGGAGAAGACAGCTAATTGCCACA CTCTCCTCTTTGGTCTTTCCTGGTACGCAGCATACAAGCCCACAGATTGAGGACTCTGCACTTG CTGTTCTCTCTGCCTGGAGCTCTATGGCTCCAGATAGACTCCTGCCAACTCCTTCGCCTTGTCC AAGTTACCTTCATTAAATGTCAGCTTAAATGTGTGCCTACTTTTTGCCCTACCTAGAATTGCAA GCACCTCTCACCACTGTGCTCCCATTCTCCTTAACTTAAGCCACTTTTATTCTCATAATAAAGC CACATATTTTTTCTTATTATATCATAATCGTACTGTATAATTTATATTTTATTACTTTTGTTTG TATACTTATTGTATGTTTCTGTTCACAAGGATGTAAACCCCATGAACACAGAGATCTTTGATTG TTTTATTCACTGATTTATGCCAAATGTTTGGAACAATGCCTGGCACATAGTAGATGTTTGATAA TTTTTTTTTTTTCTGAATGAATAAATACATTTTAGCCAAATATGCTGACTCTGCTTGTTTGGTT ATATTTATGTGTGTGTGAATGTATGTGCAGAAAAAGAAGAAATTAGTTAATACCAAATCTATAA AATGGGAAAAATAATGCTTACCTTATAGTGTTGTTATGAAACTCAACTAATATAAGATATGTGA AGGGTCTAGCATAAAATGTGGAGCATAATAAGCATTCAATAAATGGCATTCTGTTTTATTAACC ATCTGGTTGCCTATTGTTGAAGGTCGGCTCTTTAATGTGCAAATTAAGGTGTTTTATTTCCTTC ATATATCAATTATAGTCTGTTTATTTACTTCTAGATAAAATCCTTTGATGGACATTTAAGCTGT GCCAACTATTTACTAATAAAAATATTTACATTCTG
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Additional Information