NXNP1 (nucleoredoxin pseudogene 1) - Rat Genome Database

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Gene: NXNP1 (nucleoredoxin pseudogene 1) Homo sapiens
Analyze
Symbol: NXNP1
Name: nucleoredoxin pseudogene 1
RGD ID: 8656086
HGNC Page HGNC:50561
Description:
Type: pseudo (Ensembl: processed_pseudogene)
RefSeq Status: INFERRED
Related Functional Gene: NXN  
Latest Assembly: GRCh38 - Human Genome Assembly GRCh38
Position:
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381218,843,762 - 218,882,551 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1218,881,600 - 218,882,650 (-)EnsemblGRCh38hg38GRCh38
GRCh371219,017,104 - 219,055,893 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 361217,121,564 - 217,132,125 (-)NCBINCBI36Build 36hg18NCBI36
Celera1192,271,389 - 192,281,950 (-)NCBICelera
Cytogenetic Map1q41NCBI
HuRef1189,683,757 - 189,741,551 (-)NCBIHuRef
CHM1_11220,288,113 - 220,343,301 (-)NCBICHM1_1
T2T-CHM13v2.01218,078,444 - 218,117,243 (-)NCBIT2T-CHM13v2.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


References

Genomics

Variants

.
Variants in NXNP1
3 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:220
Count of miRNA genes:214
Interacting mature miRNAs:216
Transcripts:ENST00000397383
Prediction methods:Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system sensory system adipose tissue appendage
High
Medium
Low 1 2 1 2 3 2 5
Below cutoff 158 215 76 22 40 18 313 104 332 25 187 68 5 51 216

Sequence


Reference Sequences
RefSeq Acc Id: ENST00000397383
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1218,881,600 - 218,882,650 (-)Ensembl

Additional Information

Database Acc Id Source(s)
COSMIC NXNP1 COSMIC
Ensembl Genes ENSG00000226693 Ensembl
GTEx ENSG00000226693 GTEx
HGNC ID HGNC:50561 ENTREZGENE
Human Proteome Map NXNP1 Human Proteome Map
NCBI Gene NXNP1 ENTREZGENE