AKAP8P1 (A-kinase anchoring protein 8 pseudogene 1) - Rat Genome Database

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Gene: AKAP8P1 (A-kinase anchoring protein 8 pseudogene 1) Homo sapiens
Analyze
Symbol: AKAP8P1
Name: A-kinase anchoring protein 8 pseudogene 1
RGD ID: 8548077
HGNC Page HGNC:49758
Description:
Type: pseudo (Ensembl: processed_pseudogene)
RefSeq Status: INFERRED
Related Functional Gene: AKAP8  
Latest Assembly: GRCh38 - Human Genome Assembly GRCh38
Position:
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38911,011,744 - 11,013,098 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl911,011,748 - 11,013,096 (+)EnsemblGRCh38hg38GRCh38
GRCh37911,011,744 - 11,013,098 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 36911,001,223 - 11,030,285 (+)NCBINCBI36Build 36hg18NCBI36
Celera910,944,515 - 10,945,864 (+)NCBICelera
Cytogenetic Map9p23NCBI
HuRef910,974,561 - 10,975,910 (+)NCBIHuRef
CHM1_1911,011,569 - 11,012,918 (+)NCBICHM1_1
T2T-CHM13v2.0911,021,509 - 11,022,863 (+)NCBIT2T-CHM13v2.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


References

Genomics

miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:101
Count of miRNA genes:98
Interacting mature miRNAs:100
Transcripts:ENST00000434743
Prediction methods:Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system sensory system adipose tissue appendage
High
Medium 1
Low 13 14 2 1 6 2 24 13 1
Below cutoff 69 16 52 30 62 27 32 17 61 23 233 90 4 4 12

Sequence


Reference Sequences
RefSeq Acc Id: ENST00000434743
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl911,011,748 - 11,013,096 (+)Ensembl

Additional Information

Database Acc Id Source(s)
COSMIC AKAP8P1 COSMIC
Ensembl Genes ENSG00000234146 Ensembl, ENTREZGENE
GTEx ENSG00000234146 GTEx
HGNC ID HGNC:49758 ENTREZGENE
Human Proteome Map AKAP8P1 Human Proteome Map
NCBI Gene AKAP8P1 ENTREZGENE


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2015-11-24 AKAP8P1  A-kinase anchoring protein 8 pseudogene 1    A kinase (PRKA) anchor protein 8 pseudogene 1  Symbol and/or name change 5135510 APPROVED