TXNP2 (thioredoxin pseudogene 2) - Rat Genome Database

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Gene: TXNP2 (thioredoxin pseudogene 2) Homo sapiens
Analyze
Symbol: TXNP2
Name: thioredoxin pseudogene 2
RGD ID: 7774551
HGNC Page HGNC:49482
Description:
Type: pseudo (Ensembl: processed_pseudogene)
RefSeq Status: VALIDATED
Related Functional Gene: TXN  
Latest Assembly: GRCh38 - Human Genome Assembly GRCh38
Position:
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38168,513,844 - 68,514,743 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl168,514,375 - 68,514,669 (-)EnsemblGRCh38hg38GRCh38
GRCh37168,979,527 - 68,980,426 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 36168,752,015 - 68,753,114 (-)NCBINCBI36Build 36hg18NCBI36
Celera167,269,648 - 67,270,747 (-)NCBICelera
Cytogenetic Map1p31.2NCBI
HuRef167,089,297 - 67,090,196 (-)NCBIHuRef
CHM1_1169,094,883 - 69,095,782 (-)NCBICHM1_1
T2T-CHM13v2.0168,391,240 - 68,392,139 (-)NCBIT2T-CHM13v2.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


References
Additional References at PubMed
PMID:11702225  


Genomics

miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:233
Count of miRNA genes:226
Interacting mature miRNAs:232
Transcripts:ENST00000443918
Prediction methods:Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system sensory system adipose tissue appendage
High
Medium
Low 1 4 1 2 8 3
Below cutoff 21 19 9 5 16 4 18 11 15 4 118 10 1 2 8

Sequence


Reference Sequences
RefSeq Acc Id: ENST00000443918
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl168,514,375 - 68,514,669 (-)Ensembl

Additional Information

Database Acc Id Source(s)
COSMIC TXNP2 COSMIC
Ensembl Genes ENSG00000225167 Ensembl
GTEx ENSG00000225167 GTEx
HGNC ID HGNC:49482 ENTREZGENE
Human Proteome Map TXNP2 Human Proteome Map
NCBI Gene TXNP2 ENTREZGENE