LOC102555219 (uncharacterized LOC102555219) - Rat Genome Database

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Gene: LOC102555219 (uncharacterized LOC102555219) Rattus norvegicus
Analyze
Symbol: LOC102555219
Name: uncharacterized LOC102555219
RGD ID: 7698912
Description:
Type: ncrna (Ensembl: lncRNA)
RefSeq Status: MODEL
Previously known as: LOC108352300; uncharacterized LOC108352300
Latest Assembly: mRatBN7.2 - mRatBN7.2 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81140,356,959 - 40,376,071 (-)NCBIGRCr8
mRatBN7.21126,870,734 - 26,889,416 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1126,882,552 - 26,889,499 (-)EnsemblmRatBN7.2 Ensembl
Rnor_6.01127,456,436 - 27,462,396 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_5.01131,076,556 - 31,082,493 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
Celera1126,627,624 - 26,633,267 (-)NCBICelera
Cytogenetic Map11q11NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


References

Genomics

Variants

.
Variants in LOC102555219
33 total Variants

QTLs in Region (mRatBN7.2)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1598842Glom10Glomerulus QTL 103.4kidney glomerulus morphology trait (VT:0005325)index of glomerular damage (CMO:0001135)11135331169Rat
1300147Bp187Blood pressure QTL 1873.67arterial blood pressure trait (VT:2000000)blood pressure time series experimental set point of the baroreceptor response (CMO:0002593)11169446234Rat
1558659Tescar1Testicular tumor resistance QTL 13.9testis integrity trait (VT:0010572)percentage of study population developing testis tumors during a period of time (CMO:0001261)11104193166113562Rat
1641927Alcrsp10Alcohol response QTL 10alcohol metabolism trait (VT:0015089)blood ethanol level (CMO:0000535)11843667453436674Rat
724517Uae18Urinary albumin excretion QTL 183.7urine albumin amount (VT:0002871)urine albumin excretion rate (CMO:0000757)111647204744285911Rat
724554Iddm17Insulin dependent diabetes mellitus QTL 170.001blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)111897620886241447Rat
10058952Gmadr6Adrenal mass QTL 62.290.0072adrenal gland mass (VT:0010420)both adrenal glands wet weight to body weight ratio (CMO:0002411)112295940367959403Rat
8694376Bw156Body weight QTL 1562.250.001body lean mass (VT:0010483)lean tissue morphological measurement (CMO:0002184)112328045668280456Rat
9590313Scort20Serum corticosterone level QTL 206.510.001blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)112328045668280456Rat
9589032Epfw10Epididymal fat weight QTL 109.290.001epididymal fat pad mass (VT:0010421)epididymal fat pad weight to body weight ratio (CMO:0000658)112328045668280456Rat
8694424Bw162Body weight QTL 1623.80.001body lean mass (VT:0010483)lean tissue morphological measurement (CMO:0002184)112328045668280456Rat


Expression


Sequence


Reference Sequences
RefSeq Acc Id: ENSRNOT00000111034
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl1126,882,552 - 26,889,499 (-)Ensembl
RefSeq Acc Id: ENSRNOT00000114916
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl1126,882,552 - 26,889,499 (-)Ensembl
RefSeq Acc Id: XR_005491168
Type: NON-CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81140,370,458 - 40,376,050 (-)NCBI
mRatBN7.21126,881,934 - 26,889,416 (-)NCBI
RefSeq Acc Id: XR_005491169
Type: NON-CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81140,356,959 - 40,376,071 (-)NCBI
mRatBN7.21126,870,734 - 26,889,416 (-)NCBI
Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen


Additional Information

Database Acc Id Source(s)
BioCyc Gene G2FUF-22041 BioCyc
Ensembl Genes ENSRNOG00000062978 Ensembl, ENTREZGENE
NCBI Gene LOC102555219 ENTREZGENE
PhenoGen LOC102555219 PhenoGen
RatGTEx ENSRNOG00000062978 RatGTEx
RNAcentral URS0000CCE787 RNACentral


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2021-03-09 LOC102555219  uncharacterized LOC102555219  LOC108352300  uncharacterized LOC108352300  Data merged from RGD:11372675 737654 PROVISIONAL
2016-08-02 LOC108352300  uncharacterized LOC108352300      Symbol and Name status set to provisional 70820 PROVISIONAL
2013-12-18 LOC102555219  uncharacterized LOC102555219      Symbol and Name status set to provisional 70820 PROVISIONAL