3300002I08Rikl1 (RIKEN cDNA 3300002I08 gene like 1) - Rat Genome Database

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Gene: 3300002I08Rikl1 (RIKEN cDNA 3300002I08 gene like 1) Rattus norvegicus
Analyze
No known orthologs.
Symbol: 3300002I08Rikl1 (Ensembl: LOC102549291)
Name: RIKEN cDNA 3300002I08 gene like 1 (Ensembl:zinc finger protein 120-like)
RGD ID: 7524436
Description: Predicted to enable metal ion binding activity. Predicted to be involved in regulation of DNA-templated transcription. Predicted to be located in nucleus. Orthologous to human ZNF788P (zinc finger family member 788, pseudogene).
Type: protein-coding
RefSeq Status: MODEL
Previously known as: 3300002I08Rikl; LOC102549291; LOC108353272; RIKEN cDNA 3300002I08 gene like; zinc finger protein 120-like; zinc finger protein 431-like
RGD Orthologs
Alliance Orthologs
More Info homologs ...
Latest Assembly: mRatBN7.2 - mRatBN7.2 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr83159,298,092 - 159,444,804 (+)NCBIGRCr8
mRatBN7.23138,835,647 - 138,983,464 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl3138,837,711 - 138,996,686 (+)EnsemblmRatBN7.2 Ensembl
Rnor_6.0X100,631,170 - 100,640,951 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 EnsemblX100,632,171 - 100,632,562 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0X100,466,780 - 100,475,521 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
Cytogenetic Map3q41NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component
nucleus  (IEA)

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions

Genomics

Variants

.
Variants in 3300002I08Rikl1
959 total Variants

QTLs in Region (mRatBN7.2)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
2312659Slep7Serum leptin concentration QTL 70.001blood leptin amount (VT:0005667)serum leptin level (CMO:0000780)398535255168026850Rat
2312670Bw94Body weight QTL 940.01inguinal fat pad mass (VT:0010424)inguinal fat pad weight to body weight ratio (CMO:0001253)398535255168026850Rat
2312673Scl63Serum cholesterol level QTL 630.001blood cholesterol amount (VT:0000180)serum total cholesterol level (CMO:0000363)398535255168026850Rat
631673Iddm13Insulin dependent diabetes mellitus QTL 131.30.663blood glucose amount (VT:0000188)plasma glucose level (CMO:0000042)3130193298161695983Rat
9589106Insul23Insulin level QTL 2313.860.001blood insulin amount (VT:0001560)plasma insulin level (CMO:0000342)3131635904169034231Rat
631541Bp81Blood pressure QTL 814arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)3124122556169034231Rat
631841Niddm39Non-insulin dependent diabetes mellitus QTL 393.36blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)394856903159898684Rat
8552952Pigfal13Plasma insulin-like growth factor 1 level QTL 13blood insulin-like growth factor amount (VT:0010479)plasma insulin-like growth factor 1 level (CMO:0001299)3138799500169034231Rat
8662816Vetf4Vascular elastic tissue fragility QTL 44renal artery integrity trait (VT:0010642)number of ruptures of the internal elastic lamina of the renal arteries (CMO:0002563)359242096157323038Rat
1300159Kidm4Kidney mass QTL 43.83kidney mass (VT:0002707)right kidney wet weight to body weight ratio (CMO:0001953)3121056165157309487Rat
1300173Rf11Renal function QTL 113.38renal blood flow trait (VT:2000006)absolute change in renal blood flow rate (CMO:0001168)3121056165145956249Rat
1354611Despr2Despair related QTL 23.030.0028locomotor behavior trait (VT:0001392)amount of time spent in voluntary immobility (CMO:0001043)397084464142084464Rat
1578656Vnigr2Vascular neointimal growth QTL 24.2artery morphology trait (VT:0002191)lesioned artery residual lumen area (CMO:0001417)3130656562169034231Rat
1559282Emca5Estrogen-induced mammary cancer QTL 53.9mammary gland integrity trait (VT:0010552)percentage of study population developing mammary tumors during a period of time (CMO:0000948)343827364169034231Rat
1581546Pur13Proteinuria QTL 132.930.0335urine total protein amount (VT:0000032)urine protein excretion rate (CMO:0000759)378196190146592722Rat
1578653Vnigr3Vascular neointimal growth QTL 33.1artery morphology trait (VT:0002191)artery neointimal hyperplastic lesion area (CMO:0001414)3130656562169034231Rat
1581568Rf53Renal function QTL 53urine total protein amount (VT:0000032)urine protein excretion rate to body weight ratio (CMO:0001099)356395968161299569Rat
1598877Bp285Blood pressure QTL 2851.50.03arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)3120538241165538241Rat
1576306Schws3Schwannoma susceptibility QTL 30.001nervous system integrity trait (VT:0010566)percentage of study population developing trigeminal nerve neurilemmomas during a period of time (CMO:0002017)3118839124163839124Rat
1578754Stresp16Stress response QTL 1640.001blood renin amount (VT:0003349)plasma renin activity level (CMO:0000116)3112681431157681431Rat
70216Cm14Cardiac mass QTL 142.1heart mass (VT:0007028)heart wet weight (CMO:0000069)331172320163586636Rat
2292591Esta4Estrogen-induced thymic atrophy QTL 4thymus mass (VT:0004954)thymus wet weight (CMO:0000855)347233211147415807Rat
2293087Iddm27Insulin dependent diabetes mellitus QTL 272.68blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)397551417147415807Rat
619618Rf3Renal disease susceptibility QTL 36.50.001urine albumin amount (VT:0002871)urine albumin excretion rate to body weight ratio (CMO:0001270)3107693393152693393Rat
2298477Eau4Experimental allergic uveoretinitis QTL 40.0011uvea integrity trait (VT:0010551)experimental autoimmune uveitis score (CMO:0001504)3137398739169034231Rat
2301971Cm71Cardiac mass QTL 714.63heart left ventricle mass (VT:0007031)heart left ventricle weight (CMO:0000776)341874578155617519Rat
2303620Vencon4Ventilatory control QTL 43.9respiration trait (VT:0001943)tidal volume (CMO:0000222)3127162703168026850Rat
2301970Bw81Body weight QTL 815.19body mass (VT:0001259)body weight (CMO:0000012)341874578155617519Rat
2302373Gluco39Glucose level QTL 395.01blood glucose amount (VT:0000188)blood glucose level area under curve (AUC) (CMO:0000350)398535386161695835Rat
724532Cm17Cardiac mass QTL 172heart mass (VT:0007028)calculated heart weight (CMO:0000073)395735366140735366Rat
10755461Coatc16Coat color QTL 16coat/hair pigmentation trait (VT:0010463)pigmented ventral coat/hair area to total ventral coat/hair area ratio (CMO:0001812)3122438700167438700Rat


Expression


Sequence


Reference Sequences
RefSeq Acc Id: ENSRNOT00000073416   ⟹   ENSRNOP00000066998
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.0 EnsemblX100,632,171 - 100,632,562 (-)Ensembl
RefSeq Acc Id: ENSRNOT00000075429   ⟹   ENSRNOP00000065937
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl3138,837,711 - 138,996,686 (+)Ensembl
RefSeq Acc Id: XM_039106644   ⟹   XP_038962572
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr83159,303,465 - 159,444,804 (+)NCBI
mRatBN7.23138,842,778 - 138,983,464 (+)NCBI
RefSeq Acc Id: XM_039106646   ⟹   XP_038962574
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr83159,303,498 - 159,441,538 (+)NCBI
mRatBN7.23138,842,778 - 138,979,854 (+)NCBI
RefSeq Acc Id: XM_063285046   ⟹   XP_063141116
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr83159,298,092 - 159,444,804 (+)NCBI
Protein Sequences
Protein RefSeqs XP_038962572 (Get FASTA)   NCBI Sequence Viewer  
  XP_038962574 (Get FASTA)   NCBI Sequence Viewer  
  XP_063141116 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSRNOP00000065937.3
Reference Protein Sequences
RefSeq Acc Id: ENSRNOP00000066998   ⟸   ENSRNOT00000073416
RefSeq Acc Id: XP_038962572   ⟸   XM_039106644
- Peptide Label: isoform X1
RefSeq Acc Id: XP_038962574   ⟸   XM_039106646
- Peptide Label: isoform X3
RefSeq Acc Id: ENSRNOP00000065937   ⟸   ENSRNOT00000075429
RefSeq Acc Id: XP_063141116   ⟸   XM_063285046
- Peptide Label: isoform X2
Protein Domains
C2H2-type   KRAB

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-F1LU63-F1-model_v2 AlphaFold F1LU63 1-63 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen


Additional Information

Database Acc Id Source(s)
AGR Gene RGD:7524436 AgrOrtholog
BioCyc Gene G2FUF-47411 BioCyc
Ensembl Genes ENSRNOG00000046638 Ensembl
  ENSRNOG00000069811 Ensembl, UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000075429.3 UniProtKB/TrEMBL
Gene3D-CATH 6.10.140.140 UniProtKB/TrEMBL
  Classic Zinc Finger UniProtKB/TrEMBL
InterPro KRAB_dom_sf UniProtKB/TrEMBL
  Krueppel-associated_box UniProtKB/TrEMBL
  Znf_C2H2_sf UniProtKB/TrEMBL
  Znf_C2H2_type UniProtKB/TrEMBL
NCBI Gene LOC102549291 ENTREZGENE
PANTHER KRAB DOMAIN C2H2 ZINC FINGER UniProtKB/TrEMBL
  ZINC FINGER PROTEIN 747 UniProtKB/TrEMBL
Pfam KRAB UniProtKB/TrEMBL
PhenoGen 3300002I08Rikl1 PhenoGen
PROSITE KRAB UniProtKB/TrEMBL
  ZINC_FINGER_C2H2_1 UniProtKB/TrEMBL
  ZINC_FINGER_C2H2_2 UniProtKB/TrEMBL
RatGTEx ENSRNOG00000046638 RatGTEx
  ENSRNOG00000069811 RatGTEx
SMART KRAB UniProtKB/TrEMBL
  ZnF_C2H2 UniProtKB/TrEMBL
Superfamily-SCOP SSF109640 UniProtKB/TrEMBL
  SSF57667 UniProtKB/TrEMBL
UniProt M0R8Y1_RAT UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2023-10-13 3300002I08Rikl1  RIKEN cDNA 3300002I08 gene like 1  3300002I08Rikl  RIKEN cDNA 3300002I08 gene like  Name and Symbol changed 629549 APPROVED
2023-09-19 3300002I08Rikl  RIKEN cDNA 3300002I08 gene like  LOC102549291  zinc finger protein 120-like  Symbol and Name Changed 1299863 APPROVED
2021-03-09 LOC102549291  zinc finger protein 120-like  LOC108353272  zinc finger protein 431-like  Data merged from RGD:11423260 737654 PROVISIONAL
2016-08-02 LOC108353272  zinc finger protein 431-like      Symbol and Name status set to provisional 70820 PROVISIONAL
2013-12-17 LOC102549291  zinc finger protein 120-like      Symbol and Name status set to provisional 70820 PROVISIONAL