Zfp120l1 (zinc finger protein 120 like 1) - Rat Genome Database

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Gene: Zfp120l1 (zinc finger protein 120 like 1) Rattus norvegicus
Analyze
Symbol: Zfp120l1 (Ensembl: LOC102555317)
Name: zinc finger protein 120 like 1 (Ensembl:zinc finger protein 120-like)
RGD ID: 7496161
Description: Predicted to enable metal ion binding activity. Predicted to be involved in regulation of DNA-templated transcription. Predicted to be located in nucleus.
Type: protein-coding
RefSeq Status: MODEL
Previously known as: LOC102555317; zinc finger protein 120-like; zinc finger protein 431-like
Latest Assembly: mRatBN7.2 - mRatBN7.2 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr88132,745,249 - 132,762,156 (+)NCBIGRCr8
mRatBN7.28123,869,839 - 123,885,982 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl8123,869,962 - 123,884,714 (+)EnsemblmRatBN7.2 Ensembl
Rnor_6.07968,486 - 976,411 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_5.07948,168 - 969,502 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
Cytogenetic Map8q32NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component
nucleus  (IEA)

Molecular Function

References

Genomics

Variants

.
Variants in Zfp120l1
228 total Variants

QTLs in Region (mRatBN7.2)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1554321Bmd3Bone mineral density QTL 37.90.0001femur mineral mass (VT:0010011)volumetric bone mineral density (CMO:0001553)840952565123900184Rat
738011Anxrr9Anxiety related response QTL 96.1exploratory behavior trait (VT:0010471)number of entries into a discrete space in an experimental apparatus (CMO:0000960)893535351123900184Rat
1358893Bp263Blood pressure QTL 2635.01arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)893965141123900184Rat
1358903Bp252Blood pressure QTL 25270.0001arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)893965141123900184Rat
738014Anxrr15Anxiety related response QTL 153.60.005locomotor behavior trait (VT:0001392)amount of experiment time spent in a discrete space in an experimental apparatus (CMO:0000958)895718998123900184Rat
2300182Bmd56Bone mineral density QTL 565.4femur mineral mass (VT:0010011)volumetric bone mineral density (CMO:0001553)895718998123900184Rat


Expression


Sequence


Reference Sequences
RefSeq Acc Id: ENSRNOT00000099020   ⟹   ENSRNOP00000081894
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl8123,869,962 - 123,884,714 (+)Ensembl
RefSeq Acc Id: ENSRNOT00000116868   ⟹   ENSRNOP00000080162
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl8123,870,055 - 123,884,714 (+)Ensembl
RefSeq Acc Id: XM_039082785   ⟹   XP_038938713
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr88132,745,249 - 132,762,156 (+)NCBI
mRatBN7.28123,869,839 - 123,885,982 (+)NCBI
RefSeq Acc Id: XM_039082786   ⟹   XP_038938714
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr88132,747,307 - 132,762,156 (+)NCBI
mRatBN7.28123,869,841 - 123,885,982 (+)NCBI
RefSeq Acc Id: XM_039082787   ⟹   XP_038938715
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr88132,745,249 - 132,762,156 (+)NCBI
mRatBN7.28123,869,839 - 123,885,982 (+)NCBI
Protein Sequences
Protein RefSeqs XP_038938713 (Get FASTA)   NCBI Sequence Viewer  
  XP_038938714 (Get FASTA)   NCBI Sequence Viewer  
  XP_038938715 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSRNOP00000080162
  ENSRNOP00000080162.1
  ENSRNOP00000081894
  ENSRNOP00000081894.1
Reference Protein Sequences
RefSeq Acc Id: XP_038938715   ⟸   XM_039082787
- Peptide Label: isoform X2
- UniProtKB: A0A8I5ZPG6 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038938713   ⟸   XM_039082785
- Peptide Label: isoform X1
- UniProtKB: A0A8I5ZT67 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038938714   ⟸   XM_039082786
- Peptide Label: isoform X2
- UniProtKB: A0A8I5ZPG6 (UniProtKB/TrEMBL)
RefSeq Acc Id: ENSRNOP00000081894   ⟸   ENSRNOT00000099020
RefSeq Acc Id: ENSRNOP00000080162   ⟸   ENSRNOT00000116868
Protein Domains
C2H2-type   KRAB

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen


Additional Information

Database Acc Id Source(s)
BioCyc Gene G2FUF-28592 BioCyc
Ensembl Genes ENSRNOG00000062710 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000099020.1 UniProtKB/TrEMBL
  ENSRNOT00000116868.1 UniProtKB/TrEMBL
Gene3D-CATH 6.10.140.140 UniProtKB/TrEMBL
  Classic Zinc Finger UniProtKB/TrEMBL
InterPro KRAB UniProtKB/TrEMBL
  KRAB_dom_sf UniProtKB/TrEMBL
  Znf_C2H2_sf UniProtKB/TrEMBL
  Znf_C2H2_type UniProtKB/TrEMBL
NCBI Gene LOC102555317 ENTREZGENE
PANTHER NOVEL KRAB BOX AND ZINC FINGER, C2H2 TYPE DOMAIN CONTAINING PROTEIN-RELATED UniProtKB/TrEMBL
  ZINC FINGER PROTEIN UniProtKB/TrEMBL
  ZINC FINGER PROTEIN UniProtKB/TrEMBL
  ZINC FINGER PROTEIN 853 UniProtKB/TrEMBL
Pfam KRAB UniProtKB/TrEMBL
  zf-C2H2 UniProtKB/TrEMBL
  zf-C2H2_6 UniProtKB/TrEMBL
  zf-H2C2_2 UniProtKB/TrEMBL
PhenoGen Zfp120l1 PhenoGen
PROSITE KRAB UniProtKB/TrEMBL
  ZINC_FINGER_C2H2_1 UniProtKB/TrEMBL
  ZINC_FINGER_C2H2_2 UniProtKB/TrEMBL
RatGTEx ENSRNOG00000062710 RatGTEx
RNAcentral URS0000CCECF2 RNACentral
SMART KRAB UniProtKB/TrEMBL
  ZnF_C2H2 UniProtKB/TrEMBL
Superfamily-SCOP SSF109640 UniProtKB/TrEMBL
  SSF57667 UniProtKB/TrEMBL
UniProt A0A8I5ZPG6 ENTREZGENE, UniProtKB/TrEMBL
  A0A8I5ZT67 ENTREZGENE, UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2023-09-19 Zfp120l1  zinc finger protein 120 like 1  LOC102555317  zinc finger protein 120-like  Symbol and Name Changed 1299863 APPROVED
2013-12-17 LOC102555317  zinc finger protein 120-like      Symbol and Name status set to provisional 70820 PROVISIONAL