SLC6A15 (solute carrier family 6 member 15) - Rat Genome Database

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Gene: SLC6A15 (solute carrier family 6 member 15) Homo sapiens
Analyze
Symbol: SLC6A15
Name: solute carrier family 6 member 15
RGD ID: 735866
HGNC Page HGNC:13621
Description: Enables branched-chain amino acid:sodium symporter activity and neutral L-amino acid:sodium symporter activity. Involved in neutral amino acid transport. Located in membrane.
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: DKFZp761I0921; FLJ10316; homolog of rat orphan transporter v7-3; hv7-3; MGC87066; NTT73; orphan sodium- and chloride-dependent neurotransmitter transporter NTT73; orphan transporter v7-3; SBAT1; sodium- and chloride-dependent neurotransmitter transporter NTT73; sodium-coupled branched-chain amino-acid transporter 1; sodium-dependent neutral amino acid transporter B(0)AT2; sodium/chloride dependent neurotransmitter transporter Homo sapiens orphan neurotransmitter transporter NTT7; solute carrier family 6 (neurotransmitter transporter), member 15; solute carrier family 6 (neutral amino acid transporter), member 15; solute carrier family 6, member 15; transporter v7-3; V7-3
RGD Orthologs
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Related Pseudogenes: SLC6A21P  
Allele / Splice: See ClinVar data
Latest Assembly: GRCh38 - Human Genome Assembly GRCh38
Position:
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381284,859,491 - 84,912,799 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1284,859,491 - 84,913,629 (-)EnsemblGRCh38hg38GRCh38
GRCh371285,253,270 - 85,306,578 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 361283,777,398 - 83,830,705 (-)NCBINCBI36Build 36hg18NCBI36
Build 341283,777,098 - 83,809,042NCBI
Celera1284,916,853 - 84,970,192 (-)NCBICelera
Cytogenetic Map12q21.31NCBI
HuRef1282,310,425 - 82,363,775 (-)NCBIHuRef
CHM1_11285,218,075 - 85,271,562 (-)NCBICHM1_1
T2T-CHM13v2.01284,838,955 - 84,892,203 (-)NCBIT2T-CHM13v2.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
(+)-catechin  (EXP)
(2,4,5-trichlorophenoxy)acetic acid  (ISO)
1,1-dichloroethene  (ISO)
1-[3-(dimethylamino)propyl]-1-(4-fluorophenyl)-1,3-dihydro-2-benzofuran-5-carbonitrile  (ISO)
17beta-estradiol  (EXP)
2,3,7,8-tetrachlorodibenzodioxine  (ISO)
2,4-dibromophenyl 2,4,5-tribromophenyl ether  (EXP)
2-palmitoylglycerol  (EXP)
aflatoxin B1  (EXP)
agomelatine  (ISO)
all-trans-retinoic acid  (EXP,ISO)
ammonium chloride  (ISO)
aristolochic acid A  (EXP)
benzo[a]pyrene  (EXP,ISO)
bisphenol A  (EXP,ISO)
bleomycin A2  (ISO)
butanal  (EXP)
caffeine  (ISO)
cannabidiol  (ISO)
chloroprene  (ISO)
cisplatin  (EXP)
citalopram  (ISO)
copper(II) sulfate  (ISO)
corticosterone  (ISO)
Cuprizon  (ISO)
cyclosporin A  (EXP)
dichlorine  (ISO)
diquat  (ISO)
dorsomorphin  (EXP)
edaravone  (ISO)
endosulfan  (ISO)
fenfluramine  (EXP)
fluoxetine  (ISO)
folic acid  (ISO)
FR900359  (EXP)
fulvestrant  (EXP)
gentamycin  (ISO)
hydrazine  (ISO)
Licochalcone B  (EXP)
mercury dibromide  (EXP)
methylmercury chloride  (EXP)
mianserin  (ISO)
mono(2-ethylhexyl) phthalate  (ISO)
N-methyl-4-phenylpyridinium  (EXP)
ozone  (ISO)
paracetamol  (ISO)
paroxetine  (ISO)
PD 0325901  (EXP)
pentanal  (EXP)
perfluorooctane-1-sulfonic acid  (EXP)
perfluorooctanoic acid  (EXP)
phenylmercury acetate  (EXP)
pioglitazone  (ISO)
piroxicam  (EXP)
potassium chromate  (EXP)
propanal  (EXP)
sarin  (EXP)
SB 431542  (EXP)
silicon dioxide  (EXP)
silver atom  (ISO)
silver(0)  (ISO)
sodium arsenite  (ISO)
sodium fluoride  (ISO)
temozolomide  (EXP)
Tesaglitazar  (ISO)
titanium dioxide  (ISO)
tributylstannane  (ISO)
trichloroethene  (ISO)
trichostatin A  (EXP)
triclosan  (EXP)
valproic acid  (EXP)
vorinostat  (EXP)
zearalenone  (EXP)

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component
membrane  (IDA,IEA,NAS)
plasma membrane  (IBA,IEA,TAS)

References

References - curated
# Reference Title Reference Citation
1. Cloning and characterization of human NTT5 and v7-3: two orphan transporters of the Na+/Cl- -dependent neurotransmitter transporter gene family. Farmer MK, etal., Genomics 2000 Dec 1;70(2):241-52.
2. GOAs Human GO annotations GOA_HUMAN data from the GO Consortium
3. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:8889548   PMID:10471414   PMID:12477932   PMID:14702039   PMID:15489334   PMID:16185194   PMID:16226721   PMID:16344560   PMID:18195088   PMID:19147495   PMID:21521612   PMID:21873635  
PMID:22475622   PMID:22889411   PMID:23820837   PMID:23942779   PMID:26186194   PMID:26638075   PMID:27025967   PMID:27723767   PMID:27880917   PMID:28320136   PMID:28514442   PMID:28915082  
PMID:29395067   PMID:29568061   PMID:29778605   PMID:30194290   PMID:30352685   PMID:30639242   PMID:30913280   PMID:31073040   PMID:31678930   PMID:31732153   PMID:31871319   PMID:32062451  
PMID:32235678   PMID:32296183   PMID:32788342   PMID:32807901   PMID:33060197   PMID:33690923   PMID:33845483   PMID:33957083   PMID:33961781   PMID:34079125   PMID:34369648   PMID:34432599  
PMID:34597346   PMID:34672954   PMID:34709727   PMID:35271311   PMID:35384245   PMID:35696571   PMID:35844135   PMID:35993436   PMID:36049228   PMID:36180527   PMID:36610398   PMID:37232246  
PMID:37616343   PMID:38117590  


Genomics

Comparative Map Data
SLC6A15
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381284,859,491 - 84,912,799 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1284,859,491 - 84,913,629 (-)EnsemblGRCh38hg38GRCh38
GRCh371285,253,270 - 85,306,578 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 361283,777,398 - 83,830,705 (-)NCBINCBI36Build 36hg18NCBI36
Build 341283,777,098 - 83,809,042NCBI
Celera1284,916,853 - 84,970,192 (-)NCBICelera
Cytogenetic Map12q21.31NCBI
HuRef1282,310,425 - 82,363,775 (-)NCBIHuRef
CHM1_11285,218,075 - 85,271,562 (-)NCBICHM1_1
T2T-CHM13v2.01284,838,955 - 84,892,203 (-)NCBIT2T-CHM13v2.0
Slc6a15
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm3910103,203,320 - 103,255,240 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl10103,203,644 - 103,255,238 (+)EnsemblGRCm39 Ensembl
GRCm3810103,367,808 - 103,419,379 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl10103,367,783 - 103,419,377 (+)EnsemblGRCm38mm10GRCm38
MGSCv3710102,830,477 - 102,882,011 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv3610102,797,531 - 102,849,065 (+)NCBIMGSCv36mm8
Celera10105,308,965 - 105,360,380 (+)NCBICelera
Cytogenetic Map10D1NCBI
cM Map1053.98NCBI
Slc6a15
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8740,439,607 - 40,493,788 (+)NCBIGRCr8
mRatBN7.2738,553,055 - 38,607,239 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl738,553,196 - 38,607,239 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx740,490,690 - 40,544,721 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0742,693,756 - 42,747,787 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0742,468,678 - 42,522,713 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0745,328,207 - 45,381,920 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl745,328,105 - 45,382,229 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0745,348,955 - 45,402,668 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4741,498,013 - 41,552,028 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.1741,518,322 - 41,572,299 (+)NCBI
Celera735,501,267 - 35,556,333 (+)NCBICelera
Cytogenetic Map7q21NCBI
Slc6a15
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495540522,821,835 - 22,875,398 (-)EnsemblChiLan1.0
ChiLan1.0NW_00495540522,821,931 - 22,846,420 (-)NCBIChiLan1.0ChiLan1.0
SLC6A15
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21092,905,140 - 92,962,305 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11292,905,335 - 92,958,703 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01282,379,018 - 82,432,243 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11285,481,700 - 85,534,716 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1285,463,088 - 85,534,711 (-)Ensemblpanpan1.1panPan2
SLC6A15
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11526,486,828 - 26,528,885 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1526,486,815 - 26,529,483 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha1526,922,759 - 26,967,810 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.01526,997,359 - 27,042,704 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl1526,997,048 - 27,120,117 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.11526,445,335 - 26,490,617 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.01526,485,762 - 26,530,970 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01526,734,481 - 26,779,780 (-)NCBIUU_Cfam_GSD_1.0
Slc6a15
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440494533,747,392 - 33,796,488 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365072,438,934 - 2,488,005 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049365072,438,947 - 2,488,005 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
SLC6A15
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl597,092,925 - 97,148,602 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1597,093,197 - 97,148,606 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.25102,102,525 - 102,136,297 (+)NCBISscrofa10.2Sscrofa10.2susScr3
SLC6A15
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11180,256,858 - 80,309,272 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl1180,256,498 - 80,309,158 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_023666037165,026,030 - 165,093,792 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Slc6a15
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046248374,026,167 - 4,059,975 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046248374,026,857 - 4,082,871 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in SLC6A15
17 total Variants

Clinical Variants
Name Type Condition(s) Position(s) Clinical significance
GRCh38/hg38 12q21.31(chr12:80266605-85253555)x1 copy number loss See cases [RCV000051315] Chr12:80266605..85253555 [GRCh38]
Chr12:80660385..85647333 [GRCh37]
Chr12:79184516..84171464 [NCBI36]
Chr12:12q21.31		 pathogenic
GRCh38/hg38 12q21.2-21.31(chr12:77564757-85370822)x3 copy number gain See cases [RCV000053684] Chr12:77564757..85370822 [GRCh38]
Chr12:77958537..85764600 [GRCh37]
Chr12:76482668..84288731 [NCBI36]
Chr12:12q21.2-21.31		 pathogenic
GRCh38/hg38 12q21.31(chr12:84308104-84929814)x4 copy number gain See cases [RCV000140455] Chr12:84308104..84929814 [GRCh38]
Chr12:84701883..85323593 [GRCh37]
Chr12:83226014..83847724 [NCBI36]
Chr12:12q21.31		 likely benign|uncertain significance
GRCh38/hg38 12p13.33-q24.33(chr12:121271-133196807)x3 copy number gain See cases [RCV000139555] Chr12:121271..133196807 [GRCh38]
Chr12:282465..133773393 [GRCh37]
Chr12:100698..132283466 [NCBI36]
Chr12:12p13.33-q24.33		 pathogenic
GRCh38/hg38 12q21.1-22(chr12:73485697-92795805)x1 copy number loss See cases [RCV000143099] Chr12:73485697..92795805 [GRCh38]
Chr12:73879477..93189581 [GRCh37]
Chr12:72165744..91713712 [NCBI36]
Chr12:12q21.1-22		 pathogenic
GRCh37/hg19 12p13.33-q24.33(chr12:1-133851895)x3 copy number gain See cases [RCV000258805] Chr12:1..133851895 [GRCh37]
Chr12:12p13.33-q24.33		 pathogenic|likely pathogenic
GRCh37/hg19 12p13.33-q24.33(chr12:173787-133777902)x3 copy number gain See cases [RCV000510482] Chr12:173787..133777902 [GRCh37]
Chr12:12p13.33-q24.33		 pathogenic
GRCh37/hg19 12p13.33-q24.33(chr12:173787-133777902) copy number gain See cases [RCV000511643] Chr12:173787..133777902 [GRCh37]
Chr12:12p13.33-q24.33		 pathogenic
GRCh37/hg19 12q21.31(chr12:85191032-85746665)x3 copy number gain See cases [RCV000511483] Chr12:85191032..85746665 [GRCh37]
Chr12:12q21.31		 uncertain significance
GRCh37/hg19 12q21.31(chr12:84288746-85385006)x3 copy number gain See cases [RCV000512513] Chr12:84288746..85385006 [GRCh37]
Chr12:12q21.31		 likely benign
GRCh37/hg19 12q21.31(chr12:83266252-86018250)x3 copy number gain not provided [RCV000659222] Chr12:83266252..86018250 [GRCh37]
Chr12:12q21.31		 uncertain significance
GRCh37/hg19 12p13.33-q24.33(chr12:191619-133777645)x3 copy number gain not provided [RCV000750246] Chr12:191619..133777645 [GRCh37]
Chr12:12p13.33-q24.33		 pathogenic
GRCh37/hg19 12q15-21.33(chr12:69608090-89629345)x1 copy number loss not provided [RCV000737927] Chr12:69608090..89629345 [GRCh37]
Chr12:12q15-21.33		 pathogenic
GRCh37/hg19 12p13.33-q24.33(chr12:621220-133779118)x3 copy number gain not provided [RCV000750253] Chr12:621220..133779118 [GRCh37]
Chr12:12p13.33-q24.33		 pathogenic
GRCh37/hg19 12q21.31(chr12:85257265-85564834)x3 copy number gain not provided [RCV000750489] Chr12:85257265..85564834 [GRCh37]
Chr12:12q21.31		 benign
GRCh37/hg19 12q21.31(chr12:85257445-85554402)x3 copy number gain not provided [RCV000750490] Chr12:85257445..85554402 [GRCh37]
Chr12:12q21.31		 benign
GRCh37/hg19 12q21.31(chr12:85262652-85564834)x3 copy number gain not provided [RCV000750491] Chr12:85262652..85564834 [GRCh37]
Chr12:12q21.31		 benign
GRCh37/hg19 12q21.31(chr12:85277608-85377870)x3 copy number gain not provided [RCV000750492] Chr12:85277608..85377870 [GRCh37]
Chr12:12q21.31		 benign
GRCh37/hg19 12q21.31-21.32(chr12:82183041-88755577) copy number gain not provided [RCV000767570] Chr12:82183041..88755577 [GRCh37]
Chr12:12q21.31-21.32		 pathogenic
GRCh37/hg19 12q21.31(chr12:85187541-85749398)x3 copy number gain not provided [RCV000848015] Chr12:85187541..85749398 [GRCh37]
Chr12:12q21.31		 uncertain significance
GRCh37/hg19 12q21.2-22(chr12:77737623-94330526)x1 copy number loss not provided [RCV000848027] Chr12:77737623..94330526 [GRCh37]
Chr12:12q21.2-22		 pathogenic
NM_182767.6(SLC6A15):c.1209T>C (p.Tyr403=) single nucleotide variant not provided [RCV000886863] Chr12:84872695 [GRCh38]
Chr12:85266474 [GRCh37]
Chr12:12q21.31		 benign
NM_182767.6(SLC6A15):c.1668C>T (p.Asp556=) single nucleotide variant not provided [RCV000948898] Chr12:84863589 [GRCh38]
Chr12:85257368 [GRCh37]
Chr12:12q21.31		 benign
NM_182767.6(SLC6A15):c.538G>A (p.Asp180Asn) single nucleotide variant not specified [RCV004141963] Chr12:84885471 [GRCh38]
Chr12:85279250 [GRCh37]
Chr12:12q21.31		 uncertain significance
NM_182767.6(SLC6A15):c.857T>G (p.Phe286Cys) single nucleotide variant not specified [RCV004170093] Chr12:84876507 [GRCh38]
Chr12:85270286 [GRCh37]
Chr12:12q21.31		 uncertain significance
NM_182767.6(SLC6A15):c.1567A>T (p.Met523Leu) single nucleotide variant not specified [RCV004102866] Chr12:84867122 [GRCh38]
Chr12:85260901 [GRCh37]
Chr12:12q21.31		 uncertain significance
NM_182767.6(SLC6A15):c.1363G>A (p.Ala455Thr) single nucleotide variant not specified [RCV004098020] Chr12:84870610 [GRCh38]
Chr12:85264389 [GRCh37]
Chr12:12q21.31		 uncertain significance
NM_182767.6(SLC6A15):c.836T>C (p.Ile279Thr) single nucleotide variant not specified [RCV004183228] Chr12:84876528 [GRCh38]
Chr12:85270307 [GRCh37]
Chr12:12q21.31		 uncertain significance
NM_182767.6(SLC6A15):c.1997C>G (p.Pro666Arg) single nucleotide variant not specified [RCV004244373] Chr12:84861828 [GRCh38]
Chr12:85255607 [GRCh37]
Chr12:12q21.31		 uncertain significance
NM_182767.6(SLC6A15):c.1346C>T (p.Ala449Val) single nucleotide variant not specified [RCV004100693] Chr12:84870627 [GRCh38]
Chr12:85264406 [GRCh37]
Chr12:12q21.31		 uncertain significance
NM_182767.6(SLC6A15):c.2108C>T (p.Thr703Ile) single nucleotide variant not specified [RCV004138056] Chr12:84861717 [GRCh38]
Chr12:85255496 [GRCh37]
Chr12:12q21.31		 uncertain significance
NM_182767.6(SLC6A15):c.1931T>A (p.Leu644His) single nucleotide variant not specified [RCV004106102] Chr12:84861894 [GRCh38]
Chr12:85255673 [GRCh37]
Chr12:12q21.31		 uncertain significance
NM_182767.6(SLC6A15):c.1134T>G (p.Phe378Leu) single nucleotide variant not specified [RCV004153438] Chr12:84872770 [GRCh38]
Chr12:85266549 [GRCh37]
Chr12:12q21.31		 likely benign
NM_182767.6(SLC6A15):c.512A>T (p.Gln171Leu) single nucleotide variant not specified [RCV004280836] Chr12:84885497 [GRCh38]
Chr12:85279276 [GRCh37]
Chr12:12q21.31		 uncertain significance
NM_182767.6(SLC6A15):c.1625T>C (p.Ile542Thr) single nucleotide variant not specified [RCV004266986] Chr12:84867064 [GRCh38]
Chr12:85260843 [GRCh37]
Chr12:12q21.31		 uncertain significance
NM_182767.6(SLC6A15):c.937G>C (p.Gly313Arg) single nucleotide variant not specified [RCV004354940] Chr12:84873259 [GRCh38]
Chr12:85267038 [GRCh37]
Chr12:12q21.31		 uncertain significance
NM_182767.6(SLC6A15):c.376C>T (p.Arg126Trp) single nucleotide variant not specified [RCV004364136] Chr12:84885982 [GRCh38]
Chr12:85279761 [GRCh37]
Chr12:12q21.31		 uncertain significance
GRCh37/hg19 12q21.31(chr12:80647969-85713707)x1 copy number loss not provided [RCV003483158] Chr12:80647969..85713707 [GRCh37]
Chr12:12q21.31		 uncertain significance
GRCh37/hg19 12q21.1-21.33(chr12:74887087-90469800)x1 copy number loss not specified [RCV003986972] Chr12:74887087..90469800 [GRCh37]
Chr12:12q21.1-21.33		 pathogenic
NM_182767.6(SLC6A15):c.739A>G (p.Ile247Val) single nucleotide variant not specified [RCV004464244] Chr12:84883876 [GRCh38]
Chr12:85277655 [GRCh37]
Chr12:12q21.31		 uncertain significance
NM_182767.6(SLC6A15):c.2049C>A (p.Ser683Arg) single nucleotide variant not specified [RCV004464242] Chr12:84861776 [GRCh38]
Chr12:85255555 [GRCh37]
Chr12:12q21.31		 uncertain significance
NM_182767.6(SLC6A15):c.2165T>C (p.Met722Thr) single nucleotide variant not specified [RCV004464243] Chr12:84861660 [GRCh38]
Chr12:85255439 [GRCh37]
Chr12:12q21.31		 uncertain significance
NM_182767.6(SLC6A15):c.1664A>G (p.Glu555Gly) single nucleotide variant not specified [RCV004464240] Chr12:84863593 [GRCh38]
Chr12:85257372 [GRCh37]
Chr12:12q21.31		 uncertain significance
NM_182767.6(SLC6A15):c.1919G>A (p.Arg640His) single nucleotide variant not specified [RCV004464241] Chr12:84861906 [GRCh38]
Chr12:85255685 [GRCh37]
Chr12:12q21.31		 uncertain significance
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:2605
Count of miRNA genes:1016
Interacting mature miRNAs:1228
Transcripts:ENST00000266682, ENST00000309283, ENST00000450363, ENST00000547240, ENST00000548267, ENST00000549540, ENST00000551010, ENST00000551388, ENST00000551612, ENST00000551818, ENST00000552192
Prediction methods:Microtar, Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.

Markers in Region
A004A20  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh371285,254,934 - 85,255,118UniSTSGRCh37
Build 361283,779,065 - 83,779,249RGDNCBI36
Celera1284,918,520 - 84,918,704RGD
Cytogenetic Map12q21.3UniSTS
HuRef1282,312,092 - 82,312,276UniSTS
GeneMap99-GB4 RH Map12347.03UniSTS
D12S1214E  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh371285,254,909 - 85,255,019UniSTSGRCh37
Build 361283,779,040 - 83,779,150RGDNCBI36
Celera1284,918,495 - 84,918,605RGD
Cytogenetic Map12q21.3UniSTS
HuRef1282,312,067 - 82,312,177UniSTS
GeneMap99-GB4 RH Map12336.6UniSTS
NCBI RH Map12593.5UniSTS
RH92709  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh371285,253,657 - 85,253,736UniSTSGRCh37
Build 361283,777,788 - 83,777,867RGDNCBI36
Celera1284,917,243 - 84,917,322RGD
Cytogenetic Map12q21.3UniSTS
HuRef1282,310,815 - 82,310,894UniSTS
GeneMap99-GB4 RH Map12345.72UniSTS
G64530  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh371285,306,897 - 85,307,186UniSTSGRCh37
Build 361283,831,028 - 83,831,317RGDNCBI36
Celera1284,970,483 - 84,970,772RGD
Cytogenetic Map12q21.3UniSTS
HuRef1282,364,064 - 82,364,353UniSTS
G64529  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh371285,306,971 - 85,307,186UniSTSGRCh37
Build 361283,831,102 - 83,831,317RGDNCBI36
Celera1284,970,557 - 84,970,772RGD
Cytogenetic Map12q21.3UniSTS
HuRef1282,364,138 - 82,364,353UniSTS
G64783  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh371285,307,082 - 85,307,186UniSTSGRCh37
Build 361283,831,213 - 83,831,317RGDNCBI36
Celera1284,970,668 - 84,970,772RGD
Cytogenetic Map12q21.3UniSTS
HuRef1282,364,249 - 82,364,353UniSTS
SHGC-68514  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh371285,307,341 - 85,307,572UniSTSGRCh37
Build 361283,831,472 - 83,831,703RGDNCBI36
Celera1284,970,927 - 84,971,158RGD
Cytogenetic Map12q21.3UniSTS
HuRef1282,364,508 - 82,364,739UniSTS
TNG Radiation Hybrid Map1240840.0UniSTS
RH45707  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh371285,274,769 - 85,274,926UniSTSGRCh37
Build 361283,798,900 - 83,799,057RGDNCBI36
Celera1284,938,356 - 84,938,513RGD
Cytogenetic Map12q21.3UniSTS
HuRef1282,331,924 - 82,332,081UniSTS
GeneMap99-GB4 RH Map12347.62UniSTS
NCBI RH Map12593.5UniSTS
SLC6A15_9875  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh371285,276,083 - 85,276,886UniSTSGRCh37
Build 361283,800,214 - 83,801,017RGDNCBI36
Celera1284,939,670 - 84,940,473RGD
HuRef1282,333,238 - 82,334,041UniSTS
SHGC-53313  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh371285,274,660 - 85,274,765UniSTSGRCh37
Build 361283,798,791 - 83,798,896RGDNCBI36
Celera1284,938,247 - 84,938,352RGD
Cytogenetic Map12q21.3UniSTS
HuRef1282,331,815 - 82,331,920UniSTS
SHGC-30472  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh371285,255,013 - 85,255,155UniSTSGRCh37
Build 361283,779,144 - 83,779,286RGDNCBI36
Celera1284,918,599 - 84,918,741RGD
Cytogenetic Map12q21.3UniSTS
HuRef1282,312,171 - 82,312,313UniSTS
GeneMap99-GB4 RH Map12344.4UniSTS
Whitehead-RH Map12445.0UniSTS
NCBI RH Map12593.5UniSTS


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system sensory system visual system adipose tissue appendage entire extraembryonic component
High
Medium 7 32 3 9 3 183 26 709 12 28 87 1 1
Low 315 84 452 115 43 13 1681 58 2409 53 622 274 114 1 314 816 3
Below cutoff 1907 2003 761 174 666 117 2241 1692 591 163 674 1049 59 810 1725 1

Sequence

Nucleotide Sequences
RefSeq Transcripts NM_001146335 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_018057 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_182767 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_011538525 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_054372387 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AC018922 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AC128657 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AF265577 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AF351619 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AI368909 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK001178 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK022853 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK291207 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK294945 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AL050066 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AX235948 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC022253 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC039443 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC045559 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC070040 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BE535587 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BM696062 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CF529868 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CH471054 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CP068266 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CR749673 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  DA247242 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  KF455682 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  KF455685 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  KF455694 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Reference Sequences
RefSeq Acc Id: ENST00000266682   ⟹   ENSP00000266682
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1284,859,491 - 84,912,799 (-)Ensembl
RefSeq Acc Id: ENST00000309283   ⟹   ENSP00000311645
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1284,859,713 - 84,873,328 (-)Ensembl
RefSeq Acc Id: ENST00000450363   ⟹   ENSP00000390706
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1284,880,845 - 84,912,876 (-)Ensembl
RefSeq Acc Id: ENST00000547240
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1284,883,998 - 84,912,821 (-)Ensembl
RefSeq Acc Id: ENST00000548267
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1284,859,505 - 84,869,275 (-)Ensembl
RefSeq Acc Id: ENST00000549540   ⟹   ENSP00000448308
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1284,891,833 - 84,912,024 (-)Ensembl
RefSeq Acc Id: ENST00000551010   ⟹   ENSP00000475035
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1284,891,832 - 84,912,705 (-)Ensembl
RefSeq Acc Id: ENST00000551388
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1284,873,087 - 84,912,825 (-)Ensembl
RefSeq Acc Id: ENST00000551612   ⟹   ENSP00000449263
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1284,912,523 - 84,913,316 (-)Ensembl
RefSeq Acc Id: ENST00000551818
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1284,870,562 - 84,874,528 (-)Ensembl
RefSeq Acc Id: ENST00000552192   ⟹   ENSP00000450145
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1284,861,594 - 84,912,801 (-)Ensembl
RefSeq Acc Id: ENST00000679363   ⟹   ENSP00000504902
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1284,863,439 - 84,867,193 (-)Ensembl
RefSeq Acc Id: ENST00000679414
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1284,865,524 - 84,912,767 (-)Ensembl
RefSeq Acc Id: ENST00000679430   ⟹   ENSP00000505934
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1284,859,505 - 84,912,805 (-)Ensembl
RefSeq Acc Id: ENST00000679453   ⟹   ENSP00000506425
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1284,880,891 - 84,912,743 (-)Ensembl
RefSeq Acc Id: ENST00000679652
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1284,876,281 - 84,912,805 (-)Ensembl
RefSeq Acc Id: ENST00000679679   ⟹   ENSP00000505628
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1284,863,439 - 84,870,670 (-)Ensembl
RefSeq Acc Id: ENST00000679681   ⟹   ENSP00000506482
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1284,876,497 - 84,885,561 (-)Ensembl
RefSeq Acc Id: ENST00000679920
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1284,859,505 - 84,912,827 (-)Ensembl
RefSeq Acc Id: ENST00000679933   ⟹   ENSP00000505705
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1284,891,832 - 84,912,705 (-)Ensembl
RefSeq Acc Id: ENST00000679956
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1284,864,350 - 84,912,805 (-)Ensembl
RefSeq Acc Id: ENST00000679989   ⟹   ENSP00000505134
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1284,859,505 - 84,913,629 (-)Ensembl
RefSeq Acc Id: ENST00000680067
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1284,908,938 - 84,912,763 (-)Ensembl
RefSeq Acc Id: ENST00000680187   ⟹   ENSP00000506491
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1284,859,505 - 84,912,805 (-)Ensembl
RefSeq Acc Id: ENST00000680207   ⟹   ENSP00000506161
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1284,859,505 - 84,912,743 (-)Ensembl
RefSeq Acc Id: ENST00000680260   ⟹   ENSP00000505247
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1284,891,832 - 84,912,705 (-)Ensembl
RefSeq Acc Id: ENST00000680379   ⟹   ENSP00000506716
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1284,860,835 - 84,892,120 (-)Ensembl
RefSeq Acc Id: ENST00000680469   ⟹   ENSP00000505775
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1284,859,505 - 84,912,823 (-)Ensembl
RefSeq Acc Id: ENST00000680676
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1284,870,285 - 84,912,761 (-)Ensembl
RefSeq Acc Id: ENST00000680714   ⟹   ENSP00000505814
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1284,880,264 - 84,912,799 (-)Ensembl
RefSeq Acc Id: ENST00000680780   ⟹   ENSP00000506131
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1284,859,505 - 84,912,805 (-)Ensembl
RefSeq Acc Id: ENST00000680892   ⟹   ENSP00000506546
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1284,859,505 - 84,912,793 (-)Ensembl
RefSeq Acc Id: ENST00000680901
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1284,883,414 - 84,884,040 (-)Ensembl
RefSeq Acc Id: ENST00000680963   ⟹   ENSP00000505485
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1284,859,505 - 84,910,717 (-)Ensembl
RefSeq Acc Id: ENST00000681106   ⟹   ENSP00000505789
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1284,859,505 - 84,913,016 (-)Ensembl
RefSeq Acc Id: ENST00000681220   ⟹   ENSP00000505062
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1284,859,505 - 84,912,805 (-)Ensembl
RefSeq Acc Id: ENST00000681281   ⟹   ENSP00000506053
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1284,882,347 - 84,912,770 (-)Ensembl
RefSeq Acc Id: ENST00000681418
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1284,859,505 - 84,912,770 (-)Ensembl
RefSeq Acc Id: ENST00000681453
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1284,873,087 - 84,874,346 (-)Ensembl
RefSeq Acc Id: ENST00000681582
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1284,911,713 - 84,912,705 (-)Ensembl
RefSeq Acc Id: ENST00000681628
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1284,890,795 - 84,912,839 (-)Ensembl
RefSeq Acc Id: ENST00000681688   ⟹   ENSP00000505731
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1284,880,179 - 84,911,179 (-)Ensembl
RefSeq Acc Id: ENST00000681721   ⟹   ENSP00000505286
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1284,859,505 - 84,913,629 (-)Ensembl
RefSeq Acc Id: ENST00000681939
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1284,859,505 - 84,863,851 (-)Ensembl
RefSeq Acc Id: ENST00000681953
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1284,859,505 - 84,912,805 (-)Ensembl
RefSeq Acc Id: NM_001146335   ⟹   NP_001139807
RefSeq Status: VALIDATED
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh381284,859,491 - 84,912,799 (-)NCBI
GRCh371285,253,267 - 85,306,608 (-)NCBI
Celera1284,916,853 - 84,970,192 (-)RGD
HuRef1282,310,425 - 82,363,775 (-)NCBI
CHM1_11285,218,075 - 85,271,562 (-)NCBI
T2T-CHM13v2.01284,838,955 - 84,892,203 (-)NCBI
Sequence:
RefSeq Acc Id: NM_018057   ⟹   NP_060527
RefSeq Status: VALIDATED
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh381284,880,848 - 84,912,799 (-)NCBI
GRCh371285,253,267 - 85,306,608 (-)NCBI
Build 361283,798,758 - 83,830,705 (-)NCBI Archive
Celera1284,916,853 - 84,970,192 (-)RGD
HuRef1282,310,425 - 82,363,775 (-)NCBI
CHM1_11285,239,581 - 85,271,562 (-)NCBI
T2T-CHM13v2.01284,860,291 - 84,892,203 (-)NCBI
Sequence:
RefSeq Acc Id: NM_182767   ⟹   NP_877499
RefSeq Status: VALIDATED
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh381284,859,491 - 84,912,799 (-)NCBI
GRCh371285,253,267 - 85,306,608 (-)NCBI
Build 361283,777,398 - 83,830,705 (-)NCBI Archive
Celera1284,916,853 - 84,970,192 (-)RGD
HuRef1282,310,425 - 82,363,775 (-)NCBI
CHM1_11285,218,075 - 85,271,562 (-)NCBI
T2T-CHM13v2.01284,838,955 - 84,892,203 (-)NCBI
Sequence:
RefSeq Acc Id: XM_011538525   ⟹   XP_011536827
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh381284,867,230 - 84,912,799 (-)NCBI
Sequence:
RefSeq Acc Id: XM_054372387   ⟹   XP_054228362
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
T2T-CHM13v2.01284,847,203 - 84,892,203 (-)NCBI
Protein Sequences
Protein RefSeqs NP_001139807 (Get FASTA)   NCBI Sequence Viewer  
  NP_060527 (Get FASTA)   NCBI Sequence Viewer  
  NP_877499 (Get FASTA)   NCBI Sequence Viewer  
  XP_011536827 (Get FASTA)   NCBI Sequence Viewer  
  XP_054228362 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein AAG41361 (Get FASTA)   NCBI Sequence Viewer  
  AAH22253 (Get FASTA)   NCBI Sequence Viewer  
  AAH70040 (Get FASTA)   NCBI Sequence Viewer  
  AAN76519 (Get FASTA)   NCBI Sequence Viewer  
  BAA91536 (Get FASTA)   NCBI Sequence Viewer  
  BAB14274 (Get FASTA)   NCBI Sequence Viewer  
  BAF83896 (Get FASTA)   NCBI Sequence Viewer  
  BAH11933 (Get FASTA)   NCBI Sequence Viewer  
  CAC88244 (Get FASTA)   NCBI Sequence Viewer  
  CAH18464 (Get FASTA)   NCBI Sequence Viewer  
  EAW97388 (Get FASTA)   NCBI Sequence Viewer  
  EAW97389 (Get FASTA)   NCBI Sequence Viewer  
  EAW97390 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSP00000266682
  ENSP00000266682.5
  ENSP00000311645.8
  ENSP00000390706
  ENSP00000390706.2
  ENSP00000448308.1
  ENSP00000450145
  ENSP00000450145.1
  ENSP00000475035.2
  ENSP00000504902.1
  ENSP00000505062.1
  ENSP00000505134
  ENSP00000505134.1
  ENSP00000505247.1
  ENSP00000505286.1
  ENSP00000505485.1
  ENSP00000505628.1
  ENSP00000505705.1
  ENSP00000505731.1
  ENSP00000505775.1
  ENSP00000505789.1
  ENSP00000505814.1
  ENSP00000505934.1
  ENSP00000506053.1
  ENSP00000506131.1
  ENSP00000506161.1
  ENSP00000506425.1
  ENSP00000506482.1
  ENSP00000506491.1
  ENSP00000506546.1
  ENSP00000506716.1
GenBank Protein Q9H2J7 (Get FASTA)   NCBI Sequence Viewer  
Reference Protein Sequences
RefSeq Acc Id: NP_877499   ⟸   NM_182767
- Peptide Label: isoform 1
- UniProtKB: E7ESJ5 (UniProtKB/Swiss-Prot),   B7Z2P7 (UniProtKB/Swiss-Prot),   A8K592 (UniProtKB/Swiss-Prot),   Q9H9F5 (UniProtKB/Swiss-Prot),   Q9H2J7 (UniProtKB/Swiss-Prot),   Q68CX0 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: NP_001139807   ⟸   NM_001146335
- Peptide Label: isoform 3
- UniProtKB: Q68CX0 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: NP_060527   ⟸   NM_018057
- Peptide Label: isoform 2
- UniProtKB: Q8TBM6 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_011536827   ⟸   XM_011538525
- Peptide Label: isoform X1
- UniProtKB: A0A7P0T8I1 (UniProtKB/TrEMBL),   A0A7P0T8B7 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSP00000266682   ⟸   ENST00000266682
RefSeq Acc Id: ENSP00000390706   ⟸   ENST00000450363
RefSeq Acc Id: ENSP00000311645   ⟸   ENST00000309283
RefSeq Acc Id: ENSP00000448308   ⟸   ENST00000549540
RefSeq Acc Id: ENSP00000475035   ⟸   ENST00000551010
RefSeq Acc Id: ENSP00000449263   ⟸   ENST00000551612
RefSeq Acc Id: ENSP00000450145   ⟸   ENST00000552192
RefSeq Acc Id: ENSP00000505814   ⟸   ENST00000680714
RefSeq Acc Id: ENSP00000505705   ⟸   ENST00000679933
RefSeq Acc Id: ENSP00000506482   ⟸   ENST00000679681
RefSeq Acc Id: ENSP00000506161   ⟸   ENST00000680207
RefSeq Acc Id: ENSP00000505789   ⟸   ENST00000681106
RefSeq Acc Id: ENSP00000505485   ⟸   ENST00000680963
RefSeq Acc Id: ENSP00000505134   ⟸   ENST00000679989
RefSeq Acc Id: ENSP00000506131   ⟸   ENST00000680780
RefSeq Acc Id: ENSP00000505062   ⟸   ENST00000681220
RefSeq Acc Id: ENSP00000505775   ⟸   ENST00000680469
RefSeq Acc Id: ENSP00000505247   ⟸   ENST00000680260
RefSeq Acc Id: ENSP00000505934   ⟸   ENST00000679430
RefSeq Acc Id: ENSP00000505286   ⟸   ENST00000681721
RefSeq Acc Id: ENSP00000505628   ⟸   ENST00000679679
RefSeq Acc Id: ENSP00000506716   ⟸   ENST00000680379
RefSeq Acc Id: ENSP00000506546   ⟸   ENST00000680892
RefSeq Acc Id: ENSP00000506053   ⟸   ENST00000681281
RefSeq Acc Id: ENSP00000505731   ⟸   ENST00000681688
RefSeq Acc Id: ENSP00000506425   ⟸   ENST00000679453
RefSeq Acc Id: ENSP00000504902   ⟸   ENST00000679363
RefSeq Acc Id: ENSP00000506491   ⟸   ENST00000680187
RefSeq Acc Id: XP_054228362   ⟸   XM_054372387
- Peptide Label: isoform X1
- UniProtKB: A0A7P0T8I1 (UniProtKB/TrEMBL)

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-Q9H2J7-F1-model_v2 AlphaFold Q9H2J7 1-730 view protein structure

Promoters
RGD ID:6789906
Promoter ID:HG_KWN:16258
Type:CpG-Island
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:HeLa_S3
Transcripts:ENST00000318721,   NM_001146335,   UC001SZV.1,   UC001SZY.1
Position:
Human AssemblyChrPosition (strand)Source
Build 361283,830,381 - 83,830,881 (-)MPROMDB
RGD ID:7224935
Promoter ID:EPDNEW_H18212
Type:multiple initiation site
Name:SLC6A15_1
Description:solute carrier family 6 member 15
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Alternative Promoters:null; see alsoEPDNEW_H18213  
Experiment Methods:Single-end sequencing.
Position:
Human AssemblyChrPosition (strand)Source
GRCh381284,894,024 - 84,894,084EPDNEW
RGD ID:7224933
Promoter ID:EPDNEW_H18213
Type:initiation region
Name:SLC6A15_2
Description:solute carrier family 6 member 15
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Alternative Promoters:null; see alsoEPDNEW_H18212  
Experiment Methods:Single-end sequencing.
Position:
Human AssemblyChrPosition (strand)Source
GRCh381284,912,763 - 84,912,823EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene HGNC:13621 AgrOrtholog
COSMIC SLC6A15 COSMIC
Ensembl Genes ENSG00000072041 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Ensembl Transcript ENST00000266682 ENTREZGENE
  ENST00000266682.10 UniProtKB/Swiss-Prot
  ENST00000309283.12 UniProtKB/TrEMBL
  ENST00000450363 ENTREZGENE
  ENST00000450363.4 UniProtKB/Swiss-Prot
  ENST00000549540.1 UniProtKB/TrEMBL
  ENST00000551010.2 UniProtKB/TrEMBL
  ENST00000552192 ENTREZGENE
  ENST00000552192.5 UniProtKB/Swiss-Prot
  ENST00000679363.1 UniProtKB/TrEMBL
  ENST00000679430.1 UniProtKB/TrEMBL
  ENST00000679453.1 UniProtKB/TrEMBL
  ENST00000679679.1 UniProtKB/TrEMBL
  ENST00000679681.1 UniProtKB/TrEMBL
  ENST00000679933.1 UniProtKB/TrEMBL
  ENST00000679989 ENTREZGENE
  ENST00000679989.1 UniProtKB/TrEMBL
  ENST00000680187.1 UniProtKB/TrEMBL
  ENST00000680207.1 UniProtKB/TrEMBL
  ENST00000680260.1 UniProtKB/TrEMBL
  ENST00000680379.1 UniProtKB/TrEMBL
  ENST00000680469.1 UniProtKB/TrEMBL
  ENST00000680714.1 UniProtKB/TrEMBL
  ENST00000680780.1 UniProtKB/TrEMBL
  ENST00000680892.1 UniProtKB/TrEMBL
  ENST00000680963.1 UniProtKB/Swiss-Prot
  ENST00000681106.1 UniProtKB/Swiss-Prot
  ENST00000681220.1 UniProtKB/TrEMBL
  ENST00000681281.1 UniProtKB/TrEMBL
  ENST00000681688.1 UniProtKB/Swiss-Prot
  ENST00000681721.1 UniProtKB/Swiss-Prot
GTEx ENSG00000072041 GTEx
HGNC ID HGNC:13621 ENTREZGENE
Human Proteome Map SLC6A15 Human Proteome Map
InterPro B(0)AT2 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Na/ntran_symport UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Neutral_aa_SLC6 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  SNS_sf UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report hsa:55117 UniProtKB/Swiss-Prot
NCBI Gene 55117 ENTREZGENE
OMIM 607971 OMIM
PANTHER PTHR11616 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  SODIUM-DEPENDENT NEUTRAL AMINO ACID TRANSPORTER B(0)AT2 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Pfam SNF UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PharmGKB PA37799 PharmGKB
PRINTS NANEUSMPORT UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  ORPHTRNSPORT UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PROSITE NA_NEUROTRAN_SYMP_1 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  NA_NEUROTRAN_SYMP_2 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  NA_NEUROTRAN_SYMP_3 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Superfamily-SCOP SSF161070 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
UniProt A0A7P0T826_HUMAN UniProtKB/TrEMBL
  A0A7P0T8B7 ENTREZGENE, UniProtKB/TrEMBL
  A0A7P0T8I1 ENTREZGENE, UniProtKB/TrEMBL
  A0A7P0T9G8_HUMAN UniProtKB/TrEMBL
  A0A7P0T9P8_HUMAN UniProtKB/TrEMBL
  A0A7P0T9Z9_HUMAN UniProtKB/TrEMBL
  A0A7P0TA72_HUMAN UniProtKB/TrEMBL
  A0A7P0TAT1_HUMAN UniProtKB/TrEMBL
  A0A7P0TAZ8_HUMAN UniProtKB/TrEMBL
  A0A7P0TB05_HUMAN UniProtKB/TrEMBL
  A0A7P0TB74_HUMAN UniProtKB/TrEMBL
  A0A7P0TBL2_HUMAN UniProtKB/TrEMBL
  A0A7P0Z4F0_HUMAN UniProtKB/TrEMBL
  A0A7P0Z4M4_HUMAN UniProtKB/TrEMBL
  A8K592 ENTREZGENE
  B7Z2P7 ENTREZGENE
  E7ESJ5 ENTREZGENE
  F8VSG1_HUMAN UniProtKB/TrEMBL
  F8WJN6_HUMAN UniProtKB/TrEMBL
  Q68CX0 ENTREZGENE, UniProtKB/TrEMBL
  Q8IXG2_HUMAN UniProtKB/TrEMBL
  Q8TBM6 ENTREZGENE, UniProtKB/TrEMBL
  Q9H2J7 ENTREZGENE
  Q9H9F5 ENTREZGENE
  Q9NW50_HUMAN UniProtKB/TrEMBL
  S6A15_HUMAN UniProtKB/Swiss-Prot
UniProt Secondary A8K592 UniProtKB/Swiss-Prot
  B7Z2P7 UniProtKB/Swiss-Prot
  E7ESJ5 UniProtKB/Swiss-Prot
  Q9H9F5 UniProtKB/Swiss-Prot
  S4R439 UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2016-02-23 SLC6A15  solute carrier family 6 member 15    solute carrier family 6 (neutral amino acid transporter), member 15  Symbol and/or name change 5135510 APPROVED