Il17re (interleukin 17 receptor E)

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Gene: Il17re (interleukin 17 receptor E) Rattus norvegicus

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Symbol:

Il17re

Name:

interleukin 17 receptor E

RGD ID:

735148

Description:

Predicted to enable interleukin-17 receptor activity. Predicted to be involved in cytokine-mediated signaling pathway and inflammatory response. Predicted to be located in plasma membrane. Orthologous to human IL17RE (interleukin 17 receptor E); INTERACTS WITH 1,1,1-trichloro-2,2-bis(4-hydroxyphenyl)ethane; 2,3,7,8-tetrachlorodibenzodioxine; 2,3,7,8-Tetrachlorodibenzofuran.

Type:

protein-coding

RefSeq Status:

PROVISIONAL

Previously known as:

IL-17 receptor E; IL-17RE; interleukin-17 receptor E; LOC362417; MGC93201; similar to interleukin 17 receptor E isoform 1

RGD Orthologs

Alliance Orthologs

More Info

more info ...

More Info

Species	Gene symbol and name	Data Source	Assertion derived from	less info ...
Orthologs ¹				less info ...
Homo sapiens (human):	IL17RE (interleukin 17 receptor E)	HGNC	Ensembl, HomoloGene, Inparanoid, NCBI, OMA, OrthoDB, Panther, PhylomeDB
Mus musculus (house mouse):	Il17re (interleukin 17 receptor E)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chinchilla lanigera (long-tailed chinchilla):	Il17re (interleukin 17 receptor E)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Pan paniscus (bonobo/pygmy chimpanzee):	IL17RE (interleukin 17 receptor E)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Canis lupus familiaris (dog):	IL17RE (interleukin 17 receptor E)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Ictidomys tridecemlineatus (thirteen-lined ground squirrel):	Il17re (interleukin 17 receptor E)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Sus scrofa (pig):	IL17RE (interleukin 17 receptor E)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chlorocebus sabaeus (green monkey):	IL17RE (interleukin 17 receptor E)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Other homologs ²
Homo sapiens (human):	MLKL (mixed lineage kinase domain like pseudokinase)	HGNC	OMA
Alliance orthologs ³
Homo sapiens (human):	IL17RE (interleukin 17 receptor E)	Alliance	DIOPT (Ensembl Compara\|HGNC\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Mus musculus (house mouse):	Il17re (interleukin 17 receptor E)	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Danio rerio (zebrafish):	il17rel (interleukin 17 receptor E-like)	Alliance	DIOPT (OrthoInspector\|PANTHER)
Xenopus tropicalis (tropical clawed frog):	il17re	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)

Latest Assembly:

mRatBN7.2 - mRatBN7.2 Assembly

Position:

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	4	148,160,384 - 148,173,830 (+)	NCBI		GRCr8
mRatBN7.2	4	146,604,547 - 146,618,206 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	4	146,605,526 - 146,618,206 (+)	Ensembl		mRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx	4	151,989,425 - 152,002,154 (+)	NCBI	Rnor_SHR	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	4	147,770,272 - 147,782,997 (+)	NCBI	Rnor_SHRSP	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	4	146,393,087 - 146,405,307 (+)	NCBI	Rnor_WKY	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	4	145,413,157 - 145,426,608 (+)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	4	145,413,230 - 145,426,603 (+)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	4	208,711,257 - 208,723,907 (+)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	4	149,348,600 - 149,361,697 (+)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
RGSC_v3.1	4	149,593,440 - 149,606,535 (+)	NCBI
Celera	4	135,161,699 - 135,174,121 (+)	NCBI		Celera
Cytogenetic Map	4	q42	NCBI

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Annotation Click to see Annotation Detail View

Disease Annotations Click to see Annotation Detail View

Atrioventricular Septal Defect 2 (ISO)

Candidiasis, Familial, 9 (ISO)

long QT syndrome (ISO)

myoclonic-atonic epilepsy (ISO)

Neurodevelopmental Disorders (ISO)

severe congenital neutropenia 6 (ISO)

Gene-Chemical Interaction Annotations Click to see Annotation Detail View

1,1,1-trichloro-2,2-bis(4-hydroxyphenyl)ethane (EXP)

1,1-dichloroethene (ISO)

1,2-dimethylhydrazine (ISO)

17beta-estradiol (ISO)

2,3,7,8-tetrachlorodibenzodioxine (EXP,ISO)

2,3,7,8-Tetrachlorodibenzofuran (EXP)

2,4-dibromophenyl 2,4,5-tribromophenyl ether (ISO)

3',5'-cyclic AMP (EXP)

3,3',4,4',5-pentachlorobiphenyl (EXP)

4,4'-diaminodiphenylmethane (ISO)

4,4'-sulfonyldiphenol (ISO)

6-propyl-2-thiouracil (EXP)

acrylamide (EXP)

aristolochic acid A (ISO)

benzo[a]pyrene (ISO)

bisphenol A (EXP,ISO)

bisphenol F (ISO)

bleomycin A2 (ISO)

CGP 52608 (ISO)

choline (ISO)

cisplatin (ISO)

clothianidin (ISO)

dexamethasone (ISO)

Dibutyl phosphate (ISO)

dibutyl phthalate (EXP)

endosulfan (EXP)

ethylparaben (ISO)

fluorescein 5-isothiocyanate (ISO)

folic acid (ISO)

furan (EXP)

gentamycin (EXP)

L-methionine (ISO)

niclosamide (ISO)

paracetamol (EXP,ISO)

progesterone (ISO)

sodium arsenite (ISO)

tetrachloromethane (EXP)

thioacetamide (EXP)

titanium dioxide (ISO)

triclosan (ISO)

triptonide (ISO)

urethane (ISO)

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

cytokine-mediated signaling pathway (IEA)

inflammatory response (IEA)

Cellular Component

plasma membrane (IEA)

Molecular Function

interleukin-17 receptor activity (IBA,IEA)

protein binding (ISO)

References

References - curated

#	Reference Title	Reference Citation
1.	Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium.	Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2.	GOA pipeline	RGD automated data pipeline
3.	ClinVar Automated Import and Annotation Pipeline	RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
4.	Data Import for Chemical-Gene Interactions	RGD automated import pipeline for gene-chemical interactions
5.	Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences.	Strausberg RL, etal., Proc Natl Acad Sci U S A. 2002 Dec 24;99(26):16899-903. Epub 2002 Dec 11.

Genomics

Comparative Map Data

Il17re
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	4	148,160,384 - 148,173,830 (+)	NCBI		GRCr8
mRatBN7.2	4	146,604,547 - 146,618,206 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	4	146,605,526 - 146,618,206 (+)	Ensembl		mRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx	4	151,989,425 - 152,002,154 (+)	NCBI	Rnor_SHR	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	4	147,770,272 - 147,782,997 (+)	NCBI	Rnor_SHRSP	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	4	146,393,087 - 146,405,307 (+)	NCBI	Rnor_WKY	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	4	145,413,157 - 145,426,608 (+)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	4	145,413,230 - 145,426,603 (+)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	4	208,711,257 - 208,723,907 (+)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	4	149,348,600 - 149,361,697 (+)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
RGSC_v3.1	4	149,593,440 - 149,606,535 (+)	NCBI
Celera	4	135,161,699 - 135,174,121 (+)	NCBI		Celera
Cytogenetic Map	4	q42	NCBI

IL17RE
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	3	9,902,093 - 9,916,402 (+)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	3	9,902,612 - 9,916,402 (+)	Ensembl	GRCh38		hg38	GRCh38
GRCh37	3	9,944,296 - 9,958,086 (+)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	3	9,919,303 - 9,933,086 (+)	NCBI	NCBI36	Build 36	hg18	NCBI36
Celera	3	9,879,775 - 9,893,567 (+)	NCBI		Celera
Cytogenetic Map	3	p25.3	NCBI
HuRef	3	9,880,639 - 9,894,430 (+)	NCBI		HuRef
CHM1_1	3	9,894,446 - 9,908,234 (+)	NCBI		CHM1_1
T2T-CHM13v2.0	3	9,894,115 - 9,908,425 (+)	NCBI		T2T-CHM13v2.0

Il17re
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	6	113,435,659 - 113,447,719 (+)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	6	113,435,445 - 113,447,719 (+)	Ensembl		GRCm39 Ensembl
GRCm38	6	113,458,699 - 113,470,758 (+)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	6	113,458,484 - 113,470,758 (+)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	6	113,408,478 - 113,420,745 (+)	NCBI	GRCm37	MGSCv37	mm9	NCBIm37
MGSCv36	6	113,424,261 - 113,436,528 (+)	NCBI		MGSCv36	mm8
Celera	6	115,285,445 - 115,297,712 (+)	NCBI		Celera
Cytogenetic Map	6	E3	NCBI
cM Map	6	52.76	NCBI

Il17re
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955561	1,397,287 - 1,409,999 (+)	Ensembl	ChiLan1.0
ChiLan1.0	NW_004955561	1,397,286 - 1,409,999 (+)	NCBI	ChiLan1.0	ChiLan1.0

IL17RE
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	2	9,903,012 - 9,920,263 (+)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	3	9,907,792 - 9,925,022 (+)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	3	9,846,319 - 9,860,735 (+)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	3	10,195,444 - 10,207,456 (+)	NCBI	panpan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	3	10,195,209 - 10,208,958 (+)	Ensembl	panpan1.1		panPan2

IL17RE
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	20	8,356,150 - 8,376,175 (-)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	20	8,356,728 - 8,367,658 (-)	Ensembl	CanFam3.1		canFam3	CanFam3.1
Dog10K_Boxer_Tasha	20	8,388,150 - 8,409,805 (-)	NCBI		Dog10K_Boxer_Tasha
ROS_Cfam_1.0	20	8,383,708 - 8,405,364 (-)	NCBI		ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	20	8,385,937 - 8,397,793 (-)	Ensembl		ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	20	8,106,040 - 8,127,696 (-)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	20	8,451,521 - 8,473,152 (-)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	20	8,424,611 - 8,446,250 (-)	NCBI		UU_Cfam_GSD_1.0

Il17re
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024404942	15,615,192 - 15,627,614 (+)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936602	3,283,294 - 3,294,324 (-)	Ensembl	SpeTri2.0	SpeTri2.0 Ensembl
SpeTri2.0	NW_004936602	3,282,792 - 3,294,396 (-)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

IL17RE
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1	13	66,164,492 - 66,177,967 (+)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1

IL17RE
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	22	45,929,339 - 45,943,749 (+)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
Vero_WHO_p1.0	NW_023666041	120,602,960 - 120,633,838 (-)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Variants

Variants in Il17re
82 total Variants

miRNA Target Status

Predicted Target Of

	Summary Value
Count of predictions:	275
Count of miRNA genes:	179
Interacting mature miRNAs:	208
Transcripts:	ENSRNOT00000056508
Prediction methods:	Microtar, Miranda, Rnahybrid, Targetscan
Result types:	miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.

QTLs in Region (mRatBN7.2)

The following QTLs overlap with this region.

RGD ID	Symbol	Name	LOD	P Value	Trait	Sub Trait	Chr	Start	Stop	Species
1582232	Gluco25	Glucose level QTL 25	3.6	0.0023	blood glucose amount (VT:0000188)	blood glucose level (CMO:0000046)	4	85253748	148090731	Rat
1358352	Srcrt3	Stress Responsive Cort QTL 3	2.29		blood corticosterone amount (VT:0005345)	plasma corticosterone level (CMO:0001173)	4	38465774	146803430	Rat
1300116	Hrtrt5	Heart rate QTL 5	3.76		heart pumping trait (VT:2000009)	heart rate (CMO:0000002)	4	116179486	151161268	Rat
6478693	Anxrr32	Anxiety related response QTL 32		0.00092	locomotor behavior trait (VT:0001392)	measurement of voluntary locomotion into, out of or within a discrete space in an experimental apparatus (CMO:0000957)	4	144639524	182687754	Rat
10755501	Bp390	Blood pressure QTL 390	2.5		arterial blood pressure trait (VT:2000000)	diastolic blood pressure (CMO:0000005)	4	26775591	168368347	Rat
631683	Bp116	Blood pressure QTL 116		0.0001	arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	4	124303370	169303370	Rat
61451	Ciaa4	CIA Autoantibody QTL 4	3.1		blood autoantibody amount (VT:0003725)	calculated serum anti-rat type 2 collagen autoantibody titer (CMO:0001281)	4	126395976	167139601	Rat
1331738	Bp209	Blood pressure QTL 209	2.979		arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	4	138503169	179293946	Rat
6478700	Anxrr33	Anxiety related response QTL 33		0.00896	locomotor behavior trait (VT:0001392)	amount of experiment time spent in a discrete space in an experimental apparatus (CMO:0000958)	4	144639524	182687754	Rat
1549827	Scl46	Serum cholesterol level QTL 46	3.5		blood cholesterol amount (VT:0000180)	serum total cholesterol level (CMO:0000363)	4	132396220	177396220	Rat
731165	Uae21	Urinary albumin excretion QTL 21	2.4	0.0001	urine albumin amount (VT:0002871)	urine albumin excretion rate (CMO:0000757)	4	106649412	151649412	Rat
737821	Hcar9	Hepatocarcinoma resistance QTL 9	3.7		liver integrity trait (VT:0010547)	volume of individual liver tumorous lesion (CMO:0001078)	4	109866907	167139601	Rat
7411558	Bw133	Body weight QTL 133	13.84	0.001	body mass (VT:0001259)	body weight gain (CMO:0000420)	4	125590636	170590636	Rat
10401796	Kidm48	Kidney mass QTL 48			kidney mass (VT:0002707)	both kidneys wet weight (CMO:0000085)	4	145568712	182687754	Rat
6478718	Anxrr34	Anxiety related response QTL 34		0.00896	locomotor behavior trait (VT:0001392)	amount of experiment time spent in a discrete space in an experimental apparatus (CMO:0000958)	4	144639524	182687754	Rat
1549832	Bss3	Bone structure and strength QTL 3	11		femur morphology trait (VT:0000559)	femur midshaft cortical cross-sectional area (CMO:0001663)	4	109827074	154827074	Rat
70177	Xhs1	X-ray hypersensitivity QTL 1	25.1		intestine integrity trait (VT:0010554)	post-insult time to onset of moribundity (CMO:0001896)	4	82798864	152731274	Rat
2303623	Vencon2	Ventilatory control QTL 2	3.8		respiration trait (VT:0001943)	minute ventilation (CMO:0000132)	4	135204660	180204660	Rat
1578674	Bmd12	Bone mineral density QTL 12	3.8		femur mineral mass (VT:0010011)	compact volumetric bone mineral density (CMO:0001730)	4	135699135	180699135	Rat
1354660	Salc1	Saline consumption QTL 1	11.26		drinking behavior trait (VT:0001422)	saline drink intake rate (CMO:0001627)	4	44463908	148090542	Rat
1298082	Stresp4	Stress response QTL 4			blood corticosterone amount (VT:0005345)	plasma corticosterone level (CMO:0001173)	4	50119848	146803430	Rat
737978	Pia23	Pristane induced arthritis QTL 23	5.3		joint integrity trait (VT:0010548)	joint inflammation composite score (CMO:0000919)	4	131730738	167139601	Rat
61362	Oia2	Oil induced arthritis QTL 2		0.001	joint integrity trait (VT:0010548)	joint inflammation composite score (CMO:0000919)	4	138503169	173369699	Rat
70201	Gcr1	Gastric cancer resistance QTL 1	2.7		stomach morphology trait (VT:0000470)	stomach tumor susceptibility score (CMO:0002043)	4	120260281	147278687	Rat
70200	Alc18	Alcohol consumption QTL 18	9.2		drinking behavior trait (VT:0001422)	ethanol intake volume to total fluid intake volume ratio (CMO:0001591)	4	56647873	149491524	Rat
2293659	Bmd35	Bone mineral density QTL 35	4.5	0.0001	femur strength trait (VT:0010010)	femoral neck ultimate force (CMO:0001703)	4	137755016	181392681	Rat
1331759	Hrtrt13	Heart rate QTL 13	3.54628		heart pumping trait (VT:2000009)	heart rate (CMO:0000002)	4	110275411	168266883	Rat
724535	Cm18	Cardiac mass QTL 18	2.6		heart mass (VT:0007028)	calculated heart weight (CMO:0000073)	4	118856416	163856416	Rat
2316958	Gluco58	Glucose level QTL 58	10		blood glucose amount (VT:0000188)	blood glucose level (CMO:0000046)	4	11320076	180699135	Rat
6478754	Anxrr43	Anxiety related response QTL 43		0.14035	locomotor behavior trait (VT:0001392)	distance moved per unit of time into, out of or within a discrete space in an experimental apparatus (CMO:0001493)	4	144639524	182687754	Rat
2302049	Pia32	Pristane induced arthritis QTL 32	5.1	0.001	blood autoantibody amount (VT:0003725)	serum immunoglobulin G-type rheumatoid factor level relative to an arbitrary reference serum (CMO:0002112)	4	105789505	150789505	Rat
724558	Plsm2	Polydactyly-luxate syndrome (PLS) morphotypes QTL 2		0.0003	hindlimb integrity trait (VT:0010563)	hind foot phalanges count (CMO:0001949)	4	132422778	177422778	Rat
6478763	Anxrr46	Anxiety related response QTL 46		0.07428	locomotor behavior trait (VT:0001392)	amount of experiment time spent in a discrete space in an experimental apparatus (CMO:0000958)	4	110870972	155870972	Rat
6478760	Anxrr45	Anxiety related response QTL 45		0.06717	locomotor behavior trait (VT:0001392)	amount of experiment time spent in a discrete space in an experimental apparatus (CMO:0000958)	4	110870972	155870972	Rat
1331802	Srn5	Serum renin concentration QTL 5	3.045		renin activity (VT:0005581)	plasma renin activity level (CMO:0000116)	4	119428175	157578333	Rat
1298524	Oia8	Oil induced arthritis QTL 8			joint integrity trait (VT:0010548)	joint inflammation composite score (CMO:0000919)	4	138503169	173369699	Rat
738009	Sach4	Saccharine consumption QTL 4	4.9	0.000016	consumption behavior trait (VT:0002069)	saccharin intake volume to total fluid intake volume ratio (CMO:0001601)	4	59948935	154902892	Rat
2312567	Glom19	Glomerulus QTL 19	1.9	0.006	kidney glomerulus morphology trait (VT:0005325)	index of glomerular damage (CMO:0001135)	4	45456990	146803430	Rat
7207480	Bss105	Bone structure and strength QTL 105	8.1		femur strength trait (VT:0010010)	femur midshaft polar moment of inertia (CMO:0001669)	4	109827074	154827074	Rat
634335	Anxrr16	Anxiety related response QTL 16	7.22		locomotor behavior trait (VT:0001392)	number of entries into a discrete space in an experimental apparatus (CMO:0000960)	4	93308457	167139447	Rat
6478778	Anxrr51	Anxiety related response QTL 51		0.25384	locomotor behavior trait (VT:0001392)	measurement of voluntary locomotion into, out of or within a discrete space in an experimental apparatus (CMO:0000957)	4	124778595	169778595	Rat
631511	Pia7	Pristane induced arthritis QTL 7	4.3		joint integrity trait (VT:0010548)	joint inflammation composite score (CMO:0000919)	4	131730738	167139601	Rat
61406	Scwia1	Streptococcal cell wall induced arthritis QTL 1	2.3		joint integrity trait (VT:0010548)	experimental arthritis severity measurement (CMO:0001459)	4	106805662	151805662	Rat
1354612	Foco1	Food consumption QTL 1	8.87		eating behavior trait (VT:0001431)	food intake rate (CMO:0000427)	4	44463908	148090542	Rat
634347	Hcar8	Hepatocarcinoma resistance QTL 8	5.8		liver integrity trait (VT:0010547)	liver tumorous lesion area to total liver area ratio (CMO:0001075)	4	123143783	168143783	Rat
738031	Alc14	Alcohol consumption QTL 14	7.6	0.00003	consumption behavior trait (VT:0002069)	ethanol drink intake rate to body weight ratio (CMO:0001616)	4	59948935	154902892	Rat
1576316	Ept5	Estrogen-induced pituitary tumorigenesis QTL 5	3.8		pituitary gland mass (VT:0010496)	pituitary gland wet weight (CMO:0000853)	4	83428419	177635233	Rat
1576305	Emca6	Estrogen-induced mammary cancer QTL 6	5.8		mammary gland integrity trait (VT:0010552)	mammary tumor number (CMO:0000343)	4	44463720	155883716	Rat
738016	Alc16	Alcohol consumption QTL 16	3.6	0.00015	consumption behavior trait (VT:0002069)	ethanol drink intake rate to body weight ratio (CMO:0001616)	4	59948935	154902892	Rat
1358202	Gluco11	Glucose level QTL 11	2.4	0.02	adipocyte glucose uptake trait (VT:0004185)	absolute change in adipocyte glucose uptake (CMO:0000873)	4	85379421	167139601	Rat
61422	Cia13	Collagen induced arthritis QTL 13	4.5		joint integrity trait (VT:0010548)	joint inflammation composite score (CMO:0000919)	4	132642577	167139601	Rat
634342	Cia24	Collagen induced arthritis QTL 24	4.5		joint integrity trait (VT:0010548)	joint inflammation composite score (CMO:0000919)	4	146565735	175236377	Rat
2293840	Kiddil9	Kidney dilation QTL 9	2.9		kidney pelvis morphology trait (VT:0004194)	hydronephrosis severity score (CMO:0001208)	4	120926564	148090731	Rat
631674	Iddm14	Insulin dependent diabetes mellitus QTL 14			blood glucose amount (VT:0000188)	plasma glucose level (CMO:0000042)	4	64528739	157573521	Rat
12798519	Anxrr54	Anxiety related response QTL 54	2.54	0.05	locomotor behavior trait (VT:0001392)	distance moved per unit of time into, out of or within a discrete space in an experimental apparatus (CMO:0001493)	4	114627026	159627026	Rat
12798523	Anxrr56	Anxiety related response QTL 56	2.83	0.05	locomotor behavior trait (VT:0001392)	amount of experiment time spent in a discrete space in an experimental apparatus (CMO:0000958)	4	85253748	150276390	Rat
61434	Cia3	Collagen induced arthritis QTL 3	4.8		joint integrity trait (VT:0010548)	joint inflammation composite score (CMO:0000919)	4	103194656	148194656	Rat
12798527	Anxrr58	Anxiety related response QTL 58	4.11	0.05	locomotor behavior trait (VT:0001392)	distance moved per unit of time into, out of or within a discrete space in an experimental apparatus (CMO:0001493)	4	119463257	147278687	Rat
6478748	Anxrr42	Anxiety related response QTL 42		0.28008	locomotor behavior trait (VT:0001392)	amount of experiment time spent in a discrete space in an experimental apparatus (CMO:0000958)	4	144639524	182687754	Rat

Markers in Region

RH130637

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	4	146,617,915 - 146,618,140 (+)	MAPPER	mRatBN7.2
Rnor_6.0	4	145,426,318 - 145,426,542	NCBI	Rnor6.0
Rnor_5.0	4	208,723,617 - 208,723,841	UniSTS	Rnor5.0
RGSC_v3.4	4	149,361,407 - 149,361,631	UniSTS	RGSC3.4
Celera	4	135,173,831 - 135,174,055	UniSTS
RH 3.4 Map	4	936.6	UniSTS
Cytogenetic Map	4	q42	UniSTS

Expression

RNA-SEQ Expression

Click on a value in the shaded box below the category label to view a detailed expression data table for that system.

Download All Expressed Objects for this Gene

alimentary part of gastrointestinal system	appendage	circulatory system	ectoderm	endocrine system	endoderm	exocrine system	hemolymphoid system	hepatobiliary system	integumental system	mesenchyme	mesoderm	nervous system	renal system	reproductive system	respiratory system
9	11	49	109	91	90	59	25	59	6	218	97	89	45	60	31

Sequence

Nucleotide Sequences


RefSeq Transcripts	NM_001004091	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_017592700	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	AC117950	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AC183952	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	BC061739	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	BC078742	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	CH473957	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	JAXUCZ010000004	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

Ensembl Acc Id:

ENSRNOT00000056508 ⟹ ENSRNOP00000053347

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	4	146,605,630 - 146,618,206 (+)	Ensembl
Rnor_6.0 Ensembl	4	145,413,230 - 145,426,603 (+)	Ensembl

Ensembl Acc Id:

ENSRNOT00000100121 ⟹ ENSRNOP00000094911

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	4	146,605,526 - 146,617,581 (+)	Ensembl

Ensembl Acc Id:

ENSRNOT00000119312 ⟹ ENSRNOP00000085698

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	4	146,605,556 - 146,618,203 (+)	Ensembl

RefSeq Acc Id:

NM_001004091 ⟹ NP_001004091

RefSeq Status:

PROVISIONAL

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	4	148,161,182 - 148,173,830 (+)	NCBI
mRatBN7.2	4	146,605,556 - 146,618,206 (+)	NCBI
Rnor_6.0	4	145,413,958 - 145,426,608 (+)	NCBI
Rnor_5.0	4	208,711,257 - 208,723,907 (+)	NCBI
RGSC_v3.4	4	149,348,600 - 149,361,697 (+)	RGD
Celera	4	135,161,699 - 135,174,121 (+)	RGD

Sequence:

show sequence

TGTGCTTCTCACAGCTCCAGGGCCAGGCCCTACAGGAAAGCCATGGTCTCTGCTCCCTGATCCT
CCAGAAGCTCATGGGGAGCCCCAGACTGGCAGCCTTGCTCCTGTCTCAACCTCTACTGTTCATC
TGCCTTGCTGTGTCTGCTCAGGTTGCCTGCCCCTGCCTGCCACGTTGGACCAGCCACTGTCTAC
TGGCCTTCCGTGTGGATAAGCATTTTGCTGGCCTTCAGTGTGGCTGGTTCCCTCTCTTGGTGAG
GAAATCTAAAAGTTCTCATGAATTTGAAGTCTGTTGGAGGCACTGGACACCATCACCCTTCCAG
AGGAAGCTACTAGGTAGCCCTTCCTTGTCTCAGGAGAGCCATCGAATTTCCACCCACTTCCTAG
CCATCTCCCACAGAGGCCTACGTACCAAAAGGACCCAGCCTTCAGCTGCAGAAGGGATAGAACA
TCTCCCTGGAGCAGGTTCACAAAAGCATGGAGGACCTGAATTCTCCTTTGATTTGCTGCCTGAG
GTACAGGCTATTCGGGTGACTATTCCTCCAGGCCCAGAGGCCAACGTACGCCTTTGTTACCAGT
GGGCACTGGAATGTGAGGACATGAGTAGTCCTTTTGATACCCAGAAAATTGTGTCTGGGGGCCA
CACTGTAGACCTGCCTTATGAATTCCTTCTGCCTTGCATGTGCATAGAGGCCTCCTACCTGCAG
GAGGACACTGTGAGGCACAAAAAGTGTCCCTTCCGGAGCTGGCCTGAAGCTTATGGCTCCGACT
TCTGGAAGTCAATACGCTTCACTGACTACAGCCAGCACAGTCAGATGGTCATGGCTCTGACACT
CCGCTGCCCACTGAAACTGGAGGCCTCTCTCTGCTGGAGGCAGGACCCAGTCACGCCCTGCAAA
ATCCTTCCCAATGCCACAGCAAAGGAGTCAGAAGGATGGTATATCCTGGAGAATGTGGACTTGC
ACCCCCAGCTCTGCTTTAAGTTTTCTTTTGAAAACAGTAGCCATGTTGAATGTCCCCACCAGAG
TGGCTCTCTCCCATCCTGGACTGTGAGCATGGATACCCAGGCCCAACAGCTGATTCTTCACTTT
TCGACGAGGACATATGCTACCTTCAGTGCTGCCTGGAGTAACCCAGGTTTGGGGCTGGATAGCT
CCATGACTCCTGTGTACAGCATCAGTCAGACCCAGGGCTCAGTTCCAGTGACACTGAACCTCAT
TATTCCCTTCTTGAGGCAGGGGAGCTGCATCCTGGTGTGGAGGTCAGATGTCCAGTTTGCCTGG
AAGCACCTCTTGTGTCCTGATGTCTCCCATAGACACCTCGGGCTCTTGATCCTGGCACTGCTGG
GTCTCACCACTCTACTGGGTGTAGTTCTGGTCCTCTTCTGCCGGCGCCTACTGCCAGGCCCCGG
TCGAACAAGGCCAGTTTTACTCCTACACGCAGCGGACTCAGAGGCACAGCGACGCCTGGTGGGA
GCTTTGGCCGAACTGCTGCGGACCGCGCTGGGTGGTGGACGCGACGTGATCGTGGATCTCTGGG
AAGGGACGCACGTGGCTCGCATTGGACCACTGCCATGGCTCTGGGCAGCACGGGAACGCGTGGC
ACGGGAGCAGGGCACTGTGTTGCTCCTTTGGAGCTGTGCGGGCCCCAGCACTGCCTGCAGCGGC
GACCCGCAGACTGCATCCCTTCGCACCTTGTCGTGCGCTGCTCCACGCCAGCTGCTGCTCGCCT
ACTTCAGTCGCCTCTGTGCCAAAGGTGACATTCCCGGGCCGCTGCGCGCTCTACCGCGCTACCG
CCTGCTTCGTGATCTGCCACGCCTACTGAGAGCGCTGGATGCTCGACCTGCCACCCTAGCCACT
AGCTGGAGTCACCTTGGAGCTAAGGAGTGTTTGAAAAGTCGCCTGGAGCTGTGTCACCTGCTGG
AACTCGAGGCTGCCAAAGACGACTACCACGGTTCAACCAATAGTCCTTGTGGCTTCAGTTGTCT
GTAGCTACAGCCTGTGTAGCAACAGCAGTAACTCCAGAACGAGGCCGCAAACATGTACTCTTTG
GGGGTGCTTCTTGTCCCCCCAAACCGTGAGACTCATCCTAGGACCCACACTTGACCAGCCTCCC
TCTCACATTTGCTCCTTCTCAGAGTCCCTGAGAGAAAGTTGGGCTTTCCTGATAGGTCCTCGGC
CCATTCTGAGGAGGAGGGGAGATTTTCCCAATTCTTCTCACAACTGCAAAAAGACAACCGATTG
CTTGGTGTACTCTAGTCCCGGCTGGAGAGCTAGACCAGGGTTGGAAAGCAGGGCCTACGTGTCA
AGCTCGTGAAGAGTGTTCTGCTTGGCAGAGTTGAGAGAACCCCCAGCCCCCACCCTGTAAGCCA
GGGGTCCCTCGCCATTTCCTGGAGAAAGGCCCAACCCAGAAGTAGTTTGATTTGTTTGTTTGTT
TGTTTGTTTGTTTGAGACTGAATCTCACTGTGTAGCCCTTGATGGCCTGGAACAAAGAGATCTA
TCTACCTGCCTCTGCCTCCTGAGTGCTGGGATTCGAGGCCTACTTCACCACAATTGGTGAGAGG
GGTTTGTGTCGTCCAGAAAGATGAATAAAAGCAAGCATAGGAGACACGTTAAAAAAAAAAAAAA
AAAAAAAAAAAAAAAA

hide sequence

RefSeq Acc Id:

XM_017592700 ⟹ XP_017448189

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	4	148,160,384 - 148,173,830 (+)	NCBI
mRatBN7.2	4	146,604,547 - 146,618,206 (+)	NCBI
Rnor_6.0	4	145,413,157 - 145,426,608 (+)	NCBI

Sequence:

show sequence

AACCTCCCTCCCAGCGTGGACGTTGCCAAGGAGAGGGCTGATGCAGGTCAAGGGCTCCATAAGC
GAGAGGAAGCTGTAAGATGATGGGGAGGGTCCCCACAAAGCCTGGAGCCTTGTCAGCCTTTTTC
CTGCACCGGAAACCACAGGAAACCAGCTGATGCAACATGAGGATGAATGCTTCATCCTCAGCAT
GCCATGTAGACAAATGGAGAGTAACGGTTCATGTCTCAAAGTGGAGGATGTGGAACTGCCTGTG
GCAGAGTGTACTAATATGTGTATCAGATCTGCTGTATTTGGGGTATAGGAGTGGTTAAGAAATG
GGTGCACCTCCATGACAATGTGCAGGTCCCTTTCCTGTTAACTCTCTGCCACACCAAAAGCCTC
CTGTGACTGGAGGGCAGTAAGGCTTTCTACAGAACAAGCAAGTGTTCTTCTGTGCCCTGGCTCA
GGAGAAGGAATGTGACCAAGCCTGCTGGTTAGGATCAAGGAGGAGCTTCGGGGCAGGGTGGATC
TAGGGCAGGGTTAAGTGAGAGCGCCTGCTGGTACTGTGTGCTTCTCACAGCTCCAGGGCCAGGC
CCTACAGGAAAGCCATGGTCTCTGCTCCCTGATCCTCCAGAAGCTCATGGGGAGCCCCAGACTG
GCAGCCTTGCTCCTGTCTCAACCTCTACTGTTCATCTGCCTTGCTGTGTCTGCTCAGGTTGCCT
GCCCCTGCCTGCCACGTTGGACCAGCCACTGTCTACTGGCCTTCCGTGTGGATAAGCATTTTGC
TGGCCTTCAGTGTGGCTGGTTCCCTCTCTTGGTGAGGAAATCTAAAAGTTCTCATGAATTTGAA
GTCTGTTGGAGGCACTGGACACCATCACCCTTCCAGAGGAAGCTACTAGGTAGCCCTTCCTTGT
CTCAGGAGAGCCATCGAATTTCCACCCACTTCCTAGCCATCTCCCACAGAGGCCTACGTACCAA
AAGGACCCAGCCTTCAGCTGCAGAAGGGATAGAACATCTCCCTGGAGCAGGTTCACAAAAGCAT
GGAGGACCTGAATTCTCCTTTGATTTGCTGCCTGAGGTACAGGCTATTCGGGTGACTATTCCTC
CAGGCCCAGAGGCCAACGTACGCCTTTGTTACCAGTGGGCACTGGAATGTGAGGACATGAGTAG
TCCTTTTGATACCCAGAAAATTGTGTCTGGGGGCCACACTGTAGACCTGCCTTATGAATTCCTT
CTGCCTTGCATGTGCATAGAGGCCTCCTACCTGCAGGAGGACACTGTGAGGCACAAAAAGTGTC
CCTTCCGGAGCTGGCCTGAAGCTTATGGCTCCGACTTCTGGAAGTCAATACGCTTCACTGACTA
CAGCCAGCACAGTCAGATGGTCATGGCTCTGACACTCCGCTGCCCACTGAAACTGGAGGCCTCT
CTCTGCTGGAGGCAGGACCCAGTCACGCCCTGCAAAATCCTTCCCAATGCCACAGCAAAGGAGT
CAGAAGGATGGTATATCCTGGAGAATGTGGACTTGCACCCCCAGCTCTGCTTTAAGTTTTCTTT
TGAAAACAGTAGCCATGTTGAATGTCCCCACCAGAGTGGCTCTCTCCCATCCTGGACTGTGAGC
ATGGATACCCAGGCCCAACAGCTGATTCTTCACTTTTCGACGAGGACATATGCTACCTTCAGTG
CTGCCTGGAGTAACCCAGGTTTGGGGCTGGATAGCTCCATGACTCCTGTGTACAGCATCAGTCA
GACCCAGGGCTCAGTTCCAGTGACACTGAACCTCATTATTCCCTTCTTGAGGCAGGGGAGCTGC
ATCCTGGTGTGGAGGTCAGATGTCCAGTTTGCCTGGAAGCACCTCTTGTGTCCTGATGTCTCCC
ATAGACACCTCGGGCTCTTGATCCTGGCACTGCTGGGTCTCACCACTCTACTGGGTGTAGTTCT
GGTCCTCTTCTGCCGGCGCCTACTGCCAGGCCCCGGTCGAACAAGGCCAGTTTTACTCCTACAC
GCAGCGGACTCAGAGGCACAGCGACGCCTGGTGGGAGCTTTGGCCGAACTGCTGCGGACCGCGC
TGGGTGGTGGACGCGACGTGATCGTGGATCTCTGGGAAGGGACGCACGTGGCTCGCATTGGACC
ACTGCCATGGCTCTGGGCAGCACGGGAACGCGTGGCACGGGAGCAGGGCACTGTGTTGCTCCTT
TGGAGCTGTGCGGGCCCCAGCACTGCCTGCAGCGGCGACCCGCAGACTGCATCCCTTCGCACCT
TGTCGTGCGCTGCTCCACGCCAGCTGCTGCTCGCCTACTTCAGTCGCCTCTGTGCCAAAGGTGA
CATTCCCGGGCCGCTGCGCGCTCTACCGCGCTACCGCCTGCTTCGTGATCTGCCACGCCTACTG
AGAGCGCTGGATGCTCGACCTGCCACCCTAGCCACTAGCTGGAGTCACCTTGGAGCTAAGGAGT
GTTTGAAAAGTCGCCTGGAGCTGTGTCACCTGCTGGAACTCGAGGCTGCCAAAGACGACTACCA
CGGTTCAACCAATAGTCCTTGTGGCTTCAGTTGTCTGTAGCTACAGCCTGTGTAGCAACAGCAG
TAACTCCAGAACGAGGCCGCAAACATGTACTCTTTGGGGGTGCTTCTTGTCCCCCCAAACCGTG
AGACTCATCCTAGGACCCACACTTGACCAGCCTCCCTCTCACATTTGCTCCTTCTCAGAGTCCC
TGAGAGAAAGTTGGGCTTTCCTGATAGGTCCTCGGCCCATTCTGAGGAGGAGGGGAGATTTTCC
CAATTCTTCTCACAACTGCAAAAAGACAACCGATTGCTTGGTGTACTCTAGTCCCGGCTGGAGA
GCTAGACCAGGGTTGGAAAGCAGGGCCTACGTGTCAAGCTCGTGAAGAGTGTTCTGCTTGGCAG
AGTTGAGAGAACCCCCAGCCCCCACCCTGTAAGCCAGGGGTCCCTCGCCATTTCCTGGAGAAAG
GCCCAACCCAGAAGTAGTTTGATTTGTTTGTTTGTTTGTTTGTTTGTTTGAGACTGAATCTCAC
TGTGTAGCCCTTGATGGCCTGGAACAAAGAGATCTATCTACCTGCCTCTGCCTCCTGAGTGCTG
GGATTCGAGGCCTACTTCACCACAATTGGTGAGAGGGGTTTGTGTCGTCCAGAAAGATGAATAA
AAGCAAGCATAGGAGACACGTTAAA

hide sequence

Protein Sequences


Protein RefSeqs	NP_001004091	(Get FASTA)	NCBI Sequence Viewer
	XP_017448189	(Get FASTA)	NCBI Sequence Viewer
GenBank Protein	AAH61739	(Get FASTA)	NCBI Sequence Viewer
	AAH78742	(Get FASTA)	NCBI Sequence Viewer
	EDL91539	(Get FASTA)	NCBI Sequence Viewer
	EDL91540	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSRNOP00000053347.3
	ENSRNOP00000085698.1
	ENSRNOP00000094911.1
	ENSRNOP00055011109
	ENSRNOP00060018532
GenBank Protein	Q6AZ51	(Get FASTA)	NCBI Sequence Viewer

RefSeq Acc Id:	NP_001004091 ⟸ NM_001004091
- Peptide Label:	precursor
- UniProtKB:	Q6P7B8 (UniProtKB/Swiss-Prot), Q6AZ51 (UniProtKB/Swiss-Prot), A0A8L2QQI4 (UniProtKB/TrEMBL)
- Sequence:	show sequence MGSPRLAALLLSQPLLFICLAVSAQVACPCLPRWTSHCLLAFRVDKHFAGLQCGWFPLLVRKSK SSHEFEVCWRHWTPSPFQRKLLGSPSLSQESHRISTHFLAISHRGLRTKRTQPSAAEGIEHLPG AGSQKHGGPEFSFDLLPEVQAIRVTIPPGPEANVRLCYQWALECEDMSSPFDTQKIVSGGHTVD LPYEFLLPCMCIEASYLQEDTVRHKKCPFRSWPEAYGSDFWKSIRFTDYSQHSQMVMALTLRCP LKLEASLCWRQDPVTPCKILPNATAKESEGWYILENVDLHPQLCFKFSFENSSHVECPHQSGSL PSWTVSMDTQAQQLILHFSTRTYATFSAAWSNPGLGLDSSMTPVYSISQTQGSVPVTLNLIIPF LRQGSCILVWRSDVQFAWKHLLCPDVSHRHLGLLILALLGLTTLLGVVLVLFCRRLLPGPGRTR PVLLLHAADSEAQRRLVGALAELLRTALGGGRDVIVDLWEGTHVARIGPLPWLWAARERVAREQ GTVLLLWSCAGPSTACSGDPQTASLRTLSCAAPRQLLLAYFSRLCAKGDIPGPLRALPRYRLLR DLPRLLRALDARPATLATSWSHLGAKECLKSRLELCHLLELEAAKDDYHGSTNSPCGFSCL hide sequence

RefSeq Acc Id:	XP_017448189 ⟸ XM_017592700
- Peptide Label:	isoform X1
- UniProtKB:	Q6P7B8 (UniProtKB/Swiss-Prot), Q6AZ51 (UniProtKB/Swiss-Prot), A0A8L2QQI4 (UniProtKB/TrEMBL)
- Sequence:	show sequence MGSPRLAALLLSQPLLFICLAVSAQVACPCLPRWTSHCLLAFRVDKHFAGLQCGWFPLLVRKSK SSHEFEVCWRHWTPSPFQRKLLGSPSLSQESHRISTHFLAISHRGLRTKRTQPSAAEGIEHLPG AGSQKHGGPEFSFDLLPEVQAIRVTIPPGPEANVRLCYQWALECEDMSSPFDTQKIVSGGHTVD LPYEFLLPCMCIEASYLQEDTVRHKKCPFRSWPEAYGSDFWKSIRFTDYSQHSQMVMALTLRCP LKLEASLCWRQDPVTPCKILPNATAKESEGWYILENVDLHPQLCFKFSFENSSHVECPHQSGSL PSWTVSMDTQAQQLILHFSTRTYATFSAAWSNPGLGLDSSMTPVYSISQTQGSVPVTLNLIIPF LRQGSCILVWRSDVQFAWKHLLCPDVSHRHLGLLILALLGLTTLLGVVLVLFCRRLLPGPGRTR PVLLLHAADSEAQRRLVGALAELLRTALGGGRDVIVDLWEGTHVARIGPLPWLWAARERVAREQ GTVLLLWSCAGPSTACSGDPQTASLRTLSCAAPRQLLLAYFSRLCAKGDIPGPLRALPRYRLLR DLPRLLRALDARPATLATSWSHLGAKECLKSRLELCHLLELEAAKDDYHGSTNSPCGFSCL hide sequence

Ensembl Acc Id:

ENSRNOP00000053347 ⟸ ENSRNOT00000056508

Ensembl Acc Id:

ENSRNOP00000085698 ⟸ ENSRNOT00000119312

Ensembl Acc Id:

ENSRNOP00000094911 ⟸ ENSRNOT00000100121

Protein Domains

Interleukin-17 receptor C/E N-terminal SEFIR

Protein Structures

Name	Modeler	Protein Id	AA Range	Protein Structure
AF-Q6AZ51-F1-model_v2	AlphaFold	Q6AZ51	1-637	view protein structure

Transcriptome

eQTL		View at Phenogen
WGCNA		View at Phenogen
Tissue/Strain Expression		View at Phenogen

Promoters

RGD ID:

13693305

Promoter ID:

EPDNEW_R3828

Type:

initiation region

Name:

Il17re_1

Description:

interleukin 17 receptor E

SO ACC ID:

SO:0000170

Source:

EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)

Experiment Methods:

Single-end sequencing.

Position:

Rat Assembly	Chr	Position (strand)	Source
Rnor_6.0	4	145,413,961 - 145,414,021	EPDNEW

Additional Information

External Database Links

Database	Acc Id	Source(s)
AGR Gene	RGD:735148	AgrOrtholog
BioCyc Gene	G2FUF-43378	BioCyc
Ensembl Genes	ENSRNOG00000009204	Ensembl, UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	ENSRNOG00055008172	UniProtKB/Swiss-Prot
	ENSRNOG00060013676	UniProtKB/Swiss-Prot
Ensembl Transcript	ENSRNOT00000056508.4	UniProtKB/TrEMBL
	ENSRNOT00000100121.1	UniProtKB/TrEMBL
	ENSRNOT00000119312.1	UniProtKB/Swiss-Prot
	ENSRNOT00055013856	UniProtKB/Swiss-Prot
	ENSRNOT00060023373	UniProtKB/Swiss-Prot
Gene3D-CATH	3.40.50.11530	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
IMAGE_CLONE	IMAGE:5599114	IMAGE-MGC_LOAD
	IMAGE:7123764	IMAGE-MGC_LOAD
InterPro	IL-17_rcpt-like	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	IL-17_rcpt_C/E_N	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	SEFIR_dom	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report	rno:362417	UniProtKB/Swiss-Prot
MGC_CLONE	MGC:72312	IMAGE-MGC_LOAD
	MGC:93201	IMAGE-MGC_LOAD
NCBI Gene	362417	ENTREZGENE
PANTHER	INTERLEUKIN-17 RECEPTOR E	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	PTHR15583	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Pfam	IL17_R_N	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	SEFIR	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PhenoGen	Il17re	PhenoGen
PROSITE	SEFIR	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
RatGTEx	ENSRNOG00000009204	RatGTEx
	ENSRNOG00055008172	RatGTEx
	ENSRNOG00060013676	RatGTEx
UniProt	A0A8I6AMH3_RAT	UniProtKB/TrEMBL
	A0A8L2QQI4	ENTREZGENE, UniProtKB/TrEMBL
	A6IBS1_RAT	UniProtKB/TrEMBL
	A6IBS2_RAT	UniProtKB/TrEMBL
	I17RE_RAT	UniProtKB/Swiss-Prot, ENTREZGENE
	Q6P7B8	ENTREZGENE
UniProt Secondary	Q6P7B8	UniProtKB/Swiss-Prot

Nomenclature History

Date	Current Symbol	Current Name	Previous Symbol	Previous Name	Description	Reference	Status
2006-03-30	Il17re	interleukin 17 receptor E		similar to interleukin 17 receptor E isoform 1	Name updated	1299863	APPROVED
2004-09-10	Il17re	similar to interleukin 17 receptor E isoform 1	LOC362417		Symbol and Name updated	1299863	APPROVED

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

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Imported Disease Annotations - ClinVar