Gask1b (golgi associated kinase 1B)

Gene: Gask1b (golgi associated kinase 1B) Rattus norvegicus

Analyze

Symbol:

Gask1b

Name:

golgi associated kinase 1B

RGD ID:

735075

Description:

Predicted to be located in Golgi membrane. Predicted to be active in Golgi apparatus. Orthologous to human GASK1B (golgi associated kinase 1B); INTERACTS WITH 1-naphthyl isothiocyanate; 17beta-estradiol; 2,3,7,8-tetrachlorodibenzodioxine.

Type:

protein-coding

RefSeq Status:

PROVISIONAL

Previously known as:

Ened; expressed in nerve and epithelium during development; Fam198b; family with sequence similarity 198, member B; Golgi-associated kinase 1B; MGC72614; Unknown (protein for MGC:72614)

RGD Orthologs

Alliance Orthologs

More Info

more info ...

More Info

Species	Gene symbol and name	Data Source	Assertion derived from	less info ...
Orthologs ¹				less info ...
Homo sapiens (human):	GASK1B (golgi associated kinase 1B)	HGNC	EggNOG, Ensembl, HomoloGene, Inparanoid, NCBI, OMA, OrthoDB, OrthoMCL, Panther, PhylomeDB, Treefam
Mus musculus (house mouse):	Gask1b (golgi associated kinase 1B)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chinchilla lanigera (long-tailed chinchilla):	Gask1b (golgi associated kinase 1B)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Pan paniscus (bonobo/pygmy chimpanzee):	GASK1B (golgi associated kinase 1B)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Canis lupus familiaris (dog):	GASK1B (golgi associated kinase 1B)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Ictidomys tridecemlineatus (thirteen-lined ground squirrel):	Gask1b (golgi associated kinase 1B)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Sus scrofa (pig):	GASK1B (golgi associated kinase 1B)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chlorocebus sabaeus (green monkey):	GASK1B (golgi associated kinase 1B)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Heterocephalus glaber (naked mole-rat):	Gask1b (golgi associated kinase 1B)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Alliance orthologs ³
Mus musculus (house mouse):	Gask1b (golgi associated kinase 1B)	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Homo sapiens (human):	GASK1B (golgi associated kinase 1B)	Alliance	DIOPT (Ensembl Compara\|HGNC\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Danio rerio (zebrafish):	gask1b (golgi associated kinase 1B)	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Xenopus tropicalis (tropical clawed frog):	gask1b	Alliance	DIOPT (Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)

Latest Assembly:

mRatBN7.2 - mRatBN7.2 Assembly

Position:

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	2	167,345,738 - 167,410,606 (+)	NCBI		GRCr8
mRatBN7.2	2	165,047,689 - 165,112,479 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	2	165,047,684 - 165,112,477 (+)	Ensembl		mRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx	2	172,264,116 - 172,321,131 (+)	NCBI	Rnor_SHR	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	2	170,280,250 - 170,336,795 (+)	NCBI	Rnor_SHRSP	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	2	164,889,147 - 164,945,695 (+)	NCBI	Rnor_WKY	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	2	178,678,946 - 178,751,459 (+)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	2	178,679,041 - 178,750,668 (+)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	2	198,087,533 - 198,160,178 (+)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	2	171,368,285 - 171,432,819 (+)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
RGSC_v3.1	2	171,318,390 - 171,382,924 (+)	NCBI
Celera	2	159,137,934 - 159,195,169 (+)	NCBI		Celera
Cytogenetic Map	2	q33	NCBI

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Annotation Click to see Annotation Detail View

Disease Annotations Click to see Annotation Detail View

COVID-19 (ISO)

Experimental Liver Cirrhosis (ISO)

genetic disease (ISO)

Gene-Chemical Interaction Annotations Click to see Annotation Detail View

(-)-epigallocatechin 3-gallate (ISO)

1,2-dichloroethane (ISO)

1-naphthyl isothiocyanate (EXP)

17beta-estradiol (EXP,ISO)

2,3,7,8-tetrachlorodibenzodioxine (EXP)

3,3',4,4',5-pentachlorobiphenyl (EXP)

3,4-dichloroaniline (ISO)

3,4-methylenedioxymethamphetamine (EXP)

3-chloropropane-1,2-diol (EXP)

4,4'-diaminodiphenylmethane (EXP)

4,4'-sulfonyldiphenol (ISO)

4-hydroxyphenyl retinamide (ISO)

6-propyl-2-thiouracil (EXP)

acetamide (EXP)

aflatoxin B1 (ISO)

aflatoxin M1 (ISO)

aldehydo-D-glucose (ISO)

all-trans-retinoic acid (EXP,ISO)

amitrole (EXP)

atrazine (EXP)

avobenzone (ISO)

benzo[a]pyrene (ISO)

benzo[b]fluoranthene (ISO)

bisphenol A (EXP,ISO)

bisphenol F (ISO)

butanal (ISO)

caffeine (ISO)

calcitriol (ISO)

cantharidin (ISO)

carbamazepine (ISO)

carbon nanotube (ISO)

chrysene (ISO)

cisplatin (ISO)

cobalt dichloride (ISO)

copper(II) sulfate (ISO)

cyclosporin A (ISO)

D-glucose (ISO)

dexamethasone (ISO)

dibenz[a,h]anthracene (ISO)

dibutyl phthalate (ISO)

dimethylarsinic acid (EXP)

diquat (ISO)

diuron (ISO)

dorsomorphin (ISO)

doxorubicin (ISO)

endosulfan (EXP)

ethanol (ISO)

ethyl methanesulfonate (ISO)

formaldehyde (ISO)

fucoxanthin (ISO)

fulvestrant (ISO)

furan (EXP)

gemcitabine (ISO)

glucose (ISO)

glycidol (EXP)

hydroquinone (ISO)

lead(0) (ISO)

leflunomide (ISO)

lidocaine (EXP)

mercury dibromide (ISO)

methimazole (EXP)

methyl methanesulfonate (ISO)

mono(2-ethylhexyl) phthalate (ISO)

N-nitrosodimethylamine (EXP)

nickel atom (ISO)

oxaliplatin (EXP,ISO)

ozone (ISO)

paracetamol (EXP,ISO)

perfluorohexanesulfonic acid (ISO)

phenylmercury acetate (ISO)

potassium chromate (ISO)

progesterone (ISO)

quercetin (ISO)

rotenone (EXP)

S-(1,2-dichlorovinyl)-L-cysteine (ISO)

SB 431542 (ISO)

sodium arsenite (ISO)

sotorasib (ISO)

succimer (ISO)

sunitinib (ISO)

T-2 toxin (ISO)

temozolomide (ISO)

testosterone (ISO)

tetraphene (ISO)

thioacetamide (EXP)

topotecan (EXP)

trametinib (ISO)

trichostatin A (ISO)

triclosan (ISO)

urethane (ISO)

valproic acid (ISO)

vorinostat (ISO)

Gene Ontology Annotations Click to see Annotation Detail View

Cellular Component

Golgi apparatus (IBA,ISO)

Golgi membrane (IEA)

References

References - curated

#	Reference Title	Reference Citation
1.	Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium.	Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2.	Rat ISS GO annotations from MGI mouse gene data--August 2006	MGD data from the GO Consortium
3.	GOA pipeline	RGD automated data pipeline
4.	Data Import for Chemical-Gene Interactions	RGD automated import pipeline for gene-chemical interactions
5.	Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences.	Strausberg RL, etal., Proc Natl Acad Sci U S A. 2002 Dec 24;99(26):16899-903. Epub 2002 Dec 11.

Genomics

Comparative Map Data

Gask1b
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	2	167,345,738 - 167,410,606 (+)	NCBI		GRCr8
mRatBN7.2	2	165,047,689 - 165,112,479 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	2	165,047,684 - 165,112,477 (+)	Ensembl		mRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx	2	172,264,116 - 172,321,131 (+)	NCBI	Rnor_SHR	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	2	170,280,250 - 170,336,795 (+)	NCBI	Rnor_SHRSP	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	2	164,889,147 - 164,945,695 (+)	NCBI	Rnor_WKY	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	2	178,678,946 - 178,751,459 (+)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	2	178,679,041 - 178,750,668 (+)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	2	198,087,533 - 198,160,178 (+)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	2	171,368,285 - 171,432,819 (+)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
RGSC_v3.1	2	171,318,390 - 171,382,924 (+)	NCBI
Celera	2	159,137,934 - 159,195,169 (+)	NCBI		Celera
Cytogenetic Map	2	q33	NCBI

GASK1B
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	4	158,124,474 - 158,173,025 (-)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	4	158,124,474 - 158,173,318 (-)	Ensembl	GRCh38		hg38	GRCh38
GRCh37	4	159,045,626 - 159,094,177 (-)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	4	159,265,211 - 159,313,652 (-)	NCBI	NCBI36	Build 36	hg18	NCBI36
Celera	4	156,388,183 - 156,436,659 (-)	NCBI		Celera
Cytogenetic Map	4	q32.1	NCBI
HuRef	4	154,797,096 - 154,845,572 (-)	NCBI		HuRef
CHM1_1	4	159,022,919 - 159,071,420 (-)	NCBI		CHM1_1
T2T-CHM13v2.0	4	161,476,702 - 161,525,241 (-)	NCBI		T2T-CHM13v2.0

Gask1b
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	3	79,791,795 - 79,853,585 (+)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	3	79,791,840 - 79,853,587 (+)	Ensembl		GRCm39 Ensembl
GRCm38	3	79,884,484 - 79,946,278 (+)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	3	79,884,533 - 79,946,280 (+)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	3	79,689,852 - 79,750,200 (+)	NCBI	GRCm37	MGSCv37	mm9	NCBIm37
MGSCv36	3	79,971,915 - 80,029,312 (+)	NCBI		MGSCv36	mm8
Celera	3	79,913,831 - 79,976,828 (+)	NCBI		Celera
Cytogenetic Map	3	E3	NCBI
cM Map	3	35.13	NCBI

Gask1b
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0	NW_004955471	9,284,986 - 9,327,337 (+)	NCBI	ChiLan1.0	ChiLan1.0

GASK1B
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	3	155,990,288 - 156,048,438 (-)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	4	156,345,551 - 156,403,695 (-)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	4	150,443,110 - 150,492,282 (-)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	4	162,256,117 - 162,304,198 (-)	NCBI	panpan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	4	162,246,728 - 162,304,069 (-)	Ensembl	panpan1.1		panPan2

GASK1B
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	15	55,338,536 - 55,384,521 (-)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	15	55,340,058 - 55,385,857 (-)	Ensembl	CanFam3.1		canFam3	CanFam3.1
Dog10K_Boxer_Tasha	15	55,700,454 - 55,746,527 (-)	NCBI		Dog10K_Boxer_Tasha
ROS_Cfam_1.0	15	56,081,806 - 56,127,861 (-)	NCBI		ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	15	56,083,333 - 56,129,557 (-)	Ensembl		ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	15	55,321,092 - 55,367,138 (-)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	15	55,420,300 - 55,466,545 (-)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	15	55,732,909 - 55,778,982 (-)	NCBI		UU_Cfam_GSD_1.0

Gask1b
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024405301	34,852,768 - 34,909,815 (+)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936576	4,635,719 - 4,694,200 (-)	Ensembl	SpeTri2.0	SpeTri2.0 Ensembl
SpeTri2.0	NW_004936576	4,635,762 - 4,694,152 (-)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

GASK1B
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	8	47,036,899 - 47,098,718 (-)	Ensembl	Sscrofa11.1		susScr11	Sscrofa11.1
Sscrofa11.1	8	47,036,905 - 47,133,914 (-)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	8	49,264,506 - 49,361,184 (-)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

GASK1B
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	7	104,700,841 - 104,749,213 (-)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	7	104,699,986 - 104,747,769 (-)	Ensembl	ChlSab1.1	ChlSab1.1 Ensembl	chlSab2
Vero_WHO_p1.0	NW_023666037	84,402,934 - 84,457,019 (-)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Gask1b
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla 1.0	NW_004624848	420,751 - 463,903 (+)	NCBI	HetGla_female_1.0	HetGla 1.0	hetGla2

Variants

Variants in Gask1b
668 total Variants

miRNA Target Status

Predicted Target Of

	Summary Value
Count of predictions:	701
Count of miRNA genes:	287
Interacting mature miRNAs:	362
Transcripts:	ENSRNOT00000013524
Prediction methods:	Microtar, Miranda, Targetscan
Result types:	miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.

QTLs in Region (mRatBN7.2)

The following QTLs overlap with this region.

RGD ID	Symbol	Name	LOD	P Value	Trait	Sub Trait	Chr	Start	Stop	Species
1358913	Cm41	Cardiac mass QTL 41	2.73		heart mass (VT:0007028)	heart weight to body weight ratio (CMO:0000074)	2	25413423	203928301	Rat
1358917	Cm42	Cardiac mass QTL 42	2.82		heart mass (VT:0007028)	heart weight to body weight ratio (CMO:0000074)	2	25413423	203928301	Rat
2293843	Kiddil6	Kidney dilation QTL 6	3.1		kidney pelvis morphology trait (VT:0004194)	hydronephrosis severity score (CMO:0001208)	2	42804607	182042367	Rat
1298074	Bp164	Blood pressure QTL 164		0.003	arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	2	42804607	202447032	Rat
1298085	Bp165	Blood pressure QTL 165		0.0006	arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	2	42804607	202447032	Rat
61467	Bp14	Blood pressure QTL 14	2.2		arterial blood pressure trait (VT:2000000)	diastolic blood pressure (CMO:0000005)	2	43154682	202446871	Rat
61467	Bp14	Blood pressure QTL 14	2.2		arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	2	43154682	202446871	Rat
1354601	Slep1	Serum leptin concentration QTL 1	5.39		blood leptin amount (VT:0005667)	serum leptin level (CMO:0000780)	2	43171017	184114403	Rat
631266	Bp132	Blood pressure QTL 132		0.0005	arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	2	46123260	202447032	Rat
1331760	Bp206	Blood pressure QTL 206	3.62454		arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	2	56043031	202447032	Rat
1298080	Bp163	Blood pressure QTL 163		0.02	arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	2	66118275	202447032	Rat
1354648	Bp239	Blood pressure QTL 239		0.001	arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	2	66118463	226797303	Rat
1354605	Rf48	Renal function QTL 48	2.9		blood creatinine amount (VT:0005328)	plasma creatinine level (CMO:0000537)	2	74786664	206665859	Rat
61374	Edpm2	Estrogen-dependent pituitary mass QTL 2	4.42	0.86	pituitary gland mass (VT:0010496)	pituitary gland wet weight (CMO:0000853)	2	76539322	202447032	Rat
1581569	Uae32	Urinary albumin excretion QTL 32		0.0001	urine protein amount (VT:0005160)	urine albumin excretion rate (CMO:0000757)	2	78665619	219826953	Rat
724534	Uae6	Urinary albumin excretion QTL 6	10		urine albumin amount (VT:0002871)	urine albumin level (CMO:0000130)	2	78665619	249053267	Rat
8662832	Vetf7	Vascular elastic tissue fragility QTL 7	3.5		aorta elastin amount (VT:0003905)	aorta wall extracellular elastin dry weight to aorta wall dry weight ratio (CMO:0002002)	2	81689826	221035911	Rat
1354622	Kidm16	Kidney mass QTL 16	3		kidney mass (VT:0002707)	left kidney wet weight (CMO:0000083)	2	81754530	222436696	Rat
1354649	Kidm17	Kidney mass QTL 17	2.9		kidney mass (VT:0002707)	calculated kidney weight (CMO:0000160)	2	81754530	227146641	Rat
631507	Bp105	Blood pressure QTL 105		0.001	arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	2	112456140	212696837	Rat
634308	Sach6	Saccharin preference QTL 6	4.9		taste sensitivity trait (VT:0001986)	saccharin intake volume to total fluid intake volume ratio (CMO:0001601)	2	112456140	212696837	Rat
1359030	Bp277	Blood pressure QTL 277			arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	2	114837527	185876470	Rat
1359030	Bp277	Blood pressure QTL 277			arterial blood pressure trait (VT:2000000)	diastolic blood pressure (CMO:0000005)	2	114837527	185876470	Rat
1578648	Bss11	Bone structure and strength QTL 11	4.7		femur morphology trait (VT:0000559)	femoral neck cortical cross-sectional area (CMO:0001702)	2	114837527	211674221	Rat
1554319	Bmd2	Bone mineral density QTL 2	13.4	0.0001	lumbar vertebra area (VT:0010570)	lumbar vertebra cross-sectional area (CMO:0001689)	2	114837675	212549332	Rat
6907363	Bp357	Blood pressure QTL 357	4.1	0.002	arterial blood pressure trait (VT:2000000)	diastolic blood pressure (CMO:0000005)	2	129540907	174540907	Rat
1300165	Rf9	Renal function QTL 9	3.28		kidney glomerulus integrity trait (VT:0010546)	index of glomerular damage (CMO:0001135)	2	133914684	202447032	Rat
70175	BpQTLCluster3	Blood pressure QTL cluster 3	4.128		arterial blood pressure trait (VT:2000000)	diastolic blood pressure (CMO:0000005)	2	135552573	202446871	Rat
70175	BpQTLCluster3	Blood pressure QTL cluster 3	4.128		arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	2	135552573	202446871	Rat
70175	BpQTLCluster3	Blood pressure QTL cluster 3	4.128		arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	2	135552573	202446871	Rat
70175	BpQTLCluster3	Blood pressure QTL cluster 3	4.128		arterial blood pressure trait (VT:2000000)	pulse pressure (CMO:0000292)	2	135552573	202446871	Rat
70175	BpQTLCluster3	Blood pressure QTL cluster 3	4.128		arterial blood pressure trait (VT:2000000)	absolute change in systolic blood pressure (CMO:0000607)	2	135552573	202446871	Rat
1298076	Bp166	Blood pressure QTL 166		0.0009	arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	2	136445150	202447032	Rat
1581502	Esta3	Estrogen-induced thymic atrophy QTL 3			thymus mass (VT:0004954)	thymus wet weight (CMO:0000855)	2	136916935	189599348	Rat
1359022	Ppulsi1	Prepulse inhibition QTL 1	3.63		prepulse inhibition trait (VT:0003088)	acoustic startle response measurement (CMO:0001519)	2	136916935	213594495	Rat
1331794	Bp202	Blood pressure QTL 202	3.66819		arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	2	141194931	223265385	Rat
1331805	Cm29	Cardiac mass QTL 29	3.50746		heart mass (VT:0007028)	heart wet weight (CMO:0000069)	2	141194931	223265385	Rat
71113	Cari2	Carrageenan-induced inflammation QTL 2	2.7	0.009	hypodermis integrity trait (VT:0010550)	inflammatory exudate volume (CMO:0001429)	2	141596551	202447032	Rat
724568	Uae13	Urinary albumin excretion QTL 13	4.4		urine albumin amount (VT:0002871)	urine albumin excretion rate (CMO:0000757)	2	143157029	210020885	Rat
10043136	Iddm54	Insulin dependent diabetes mellitus QTL 54	3.4	0.0001	blood glucose amount (VT:0000188)	blood glucose level (CMO:0000046)	2	143657411	190602963	Rat
10043136	Iddm54	Insulin dependent diabetes mellitus QTL 54	3.4	0.0001	blood glucose amount (VT:0000188)	age at onset/diagnosis of type 1 diabetes mellitus (CMO:0001140)	2	143657411	190602963	Rat
6903312	Bw112	Body weight QTL 112	3.2	0.0013	body mass (VT:0001259)	body weight (CMO:0000012)	2	143657569	184114274	Rat
61401	Niddm2	Non-insulin dependent diabetes mellitus QTL 2	4.54		blood glucose amount (VT:0000188)	blood glucose level (CMO:0000046)	2	144599348	189599348	Rat
631520	Bp73	Blood pressure QTL 73		0.0001	arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	2	147686913	168355276	Rat
1598833	Bp295	Blood pressure QTL 295	3.5		arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	2	147798556	192798556	Rat
1641925	Alcrsp2	Alcohol response QTL 2			response to alcohol trait (VT:0010489)	duration of loss of righting reflex (CMO:0002289)	2	149559561	221167075	Rat
1641891	Alcrsp17	Alcohol response QTL 17			response to alcohol trait (VT:0010489)	duration of loss of righting reflex (CMO:0002289)	2	149559561	249053267	Rat
1598805	Memor8	Memory QTL 8	3		exploratory behavior trait (VT:0010471)	average horizontal distance between subject and target during voluntary locomotion in an experimental apparatus (CMO:0002674)	2	150341585	189039377	Rat
631501	Bp101	Blood pressure QTL 101	2.4		arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	2	150341684	202446871	Rat
2301966	Bp322	Blood pressure QTL 322	3.58		arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	2	150540301	202447032	Rat
1354609	Niddm62	Non-insulin dependent diabetes mellitus QTL 62	4.72	0.000006	insulin secretion trait (VT:0003564)	plasma insulin level (CMO:0000342)	2	150540301	202447032	Rat
12879845	Cm89	Cardiac mass QTL 89		0.008	heart left ventricle mass (VT:0007031)	heart left ventricle weight to body weight ratio (CMO:0000530)	2	152413072	175950118	Rat
12879846	Cm90	Cardiac mass QTL 90		0.011	heart right ventricle mass (VT:0007033)	heart right ventricle weight to body weight ratio (CMO:0000914)	2	152413072	175950118	Rat
12879847	Am4	Aortic mass QTL 4		0.001	aorta mass (VT:0002845)	aorta weight to aorta length to body weight ratio (CMO:0002722)	2	152413072	175950118	Rat
11565180	Kidm56	Kidney mass QTL 56		0.003	kidney mass (VT:0002707)	both kidneys wet weight to body weight ratio (CMO:0000340)	2	152413072	175950118	Rat
11565181	Bw176	Body weight QTL 176		0.002	body mass (VT:0001259)	body weight (CMO:0000012)	2	152413072	175950118	Rat
2301415	Cm67	Cardiac mass QTL 67		0.003	heart mass (VT:0007028)	heart wet weight to body weight ratio (CMO:0002408)	2	152413072	175950118	Rat
12879836	Kidm61	Kidney mass QTL 61		0.001	kidney mass (VT:0002707)	both kidneys wet weight to body weight ratio (CMO:0000340)	2	152413072	185122374	Rat
12879837	Am2	Aortic mass QTL 2		0.001	aorta mass (VT:0002845)	aorta weight to aorta length to body weight ratio (CMO:0002722)	2	152413072	185122374	Rat
12879838	Cm86	Cardiac mass QTL 86		0.002	heart left ventricle mass (VT:0007031)	heart left ventricle weight to body weight ratio (CMO:0000530)	2	152413072	185122374	Rat
12879839	Cm85	Cardiac mass QTL 85		0.001	heart mass (VT:0007028)	heart wet weight to body weight ratio (CMO:0002408)	2	152413072	185122374	Rat
12879840	Bw179	Body weight QTL 179		0.005	body mass (VT:0001259)	body weight (CMO:0000012)	2	152413072	185122374	Rat
1359032	Hrtrt18	Heart rate QTL 18			heart pumping trait (VT:2000009)	heart rate (CMO:0000002)	2	157142078	192625452	Rat
1358900	Bw48	Body weight QTL 48	4.88		body mass (VT:0001259)	body weight (CMO:0000012)	2	157142078	211086598	Rat
8662843	Vetf9	Vascular elastic tissue fragility QTL 9	2.05		thoracic aorta molecular composition trait (VT:0010568)	aorta wall extracellular elastin dry weight to aorta wall extracellular collagen weight ratio (CMO:0002003)	2	157142078	226277316	Rat
1302793	Bw16	Body weight QTL 16	5	0.0001	body mass (VT:0001259)	body weight (CMO:0000012)	2	157142209	202446871	Rat
7488925	Bp364	Blood pressure QTL 364		0.001	arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	2	160564068	205564068	Rat
1358356	Srcrt1	Stress Responsive Cort QTL1	3.66		blood corticosterone amount (VT:0005345)	plasma corticosterone level (CMO:0001173)	2	161699179	222436696	Rat
7488927	Bp365	Blood pressure QTL 365		0.008	arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	2	162765032	207765032	Rat
2306901	Bp337	Blood pressure QTL 337		0.01	arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	2	164073756	227146641	Rat

Markers in Region

RH127673

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	2	165,112,184 - 165,112,386 (+)	MAPPER	mRatBN7.2
Rnor_6.0	2	178,749,760 - 178,749,961	NCBI	Rnor6.0
Rnor_5.0	2	198,158,479 - 198,158,680	UniSTS	Rnor5.0
RGSC_v3.4	2	171,432,525 - 171,432,726	UniSTS	RGSC3.4
Celera	2	159,194,875 - 159,195,076	UniSTS
Cytogenetic Map	2	q33	UniSTS

RH131521

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	2	165,110,846 - 165,111,048 (+)	MAPPER	mRatBN7.2
Rnor_6.0	2	178,748,422 - 178,748,623	NCBI	Rnor6.0
Rnor_5.0	2	198,157,141 - 198,157,342	UniSTS	Rnor5.0
RGSC_v3.4	2	171,431,187 - 171,431,388	UniSTS	RGSC3.4
Celera	2	159,193,537 - 159,193,738	UniSTS
RH 3.4 Map	2	1060.2	UniSTS
Cytogenetic Map	2	q33	UniSTS

Expression

RNA-SEQ Expression

High: > 1000 TPM value Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM Below Cutoff: < 0.5 TPM

	alimentary part of gastrointestinal system	circulatory system	endocrine system	exocrine system	hemolymphoid system	hepatobiliary system	integumental system	musculoskeletal system	nervous system	renal system	reproductive system	respiratory system	appendage
High
Medium		42	8		11		2	2	7	28	33	11	2
Low	3	1	49	41	8	41	6	9	67	7	7		6
Below cutoff											1

View RNA-SEQ Expression Data

Sequence

Nucleotide Sequences


RefSeq Transcripts	NM_199105	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006232514	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	BC061747	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	CH473976	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	FQ214762	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	FQ228163	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	FQ233057	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	JAXUCZ010000002	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

RefSeq Acc Id:

ENSRNOT00000013524 ⟹ ENSRNOP00000013525

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	2	165,047,684 - 165,112,477 (+)	Ensembl
Rnor_6.0 Ensembl	2	178,679,041 - 178,750,051 (+)	Ensembl

RefSeq Acc Id:

ENSRNOT00000088686 ⟹ ENSRNOP00000073355

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
Rnor_6.0 Ensembl	2	178,679,395 - 178,750,668 (+)	Ensembl

RefSeq Acc Id:

NM_199105 ⟹ NP_954536

RefSeq Status:

PROVISIONAL

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	2	167,345,842 - 167,410,606 (+)	NCBI
mRatBN7.2	2	165,047,717 - 165,112,479 (+)	NCBI
Rnor_6.0	2	178,679,041 - 178,750,054 (+)	NCBI
Rnor_5.0	2	198,087,533 - 198,160,178 (+)	NCBI
RGSC_v3.4	2	171,368,285 - 171,432,819 (+)	RGD
Celera	2	159,137,934 - 159,195,169 (+)	RGD

Sequence:

show sequence

CTTCTTAGTTTTGTCTACTTTTCCTGGTCGTTTCCCTCATCCAGGACTGGTGGGAGACAAGTGT
TAGTCTGCAAACAGCCCAGATGTAAGAGTCAGCCCCCCTTTCTCCTGGAGAAGGCTGATAGGAG
TTTAAAAGGCTTGCGGTGGTCAGTGCACAAAGCGTTCCCAGAGCCCGCGGCGACCCTTCTCTTT
TACCTCTGCCTGTTGGAGACCACTTAGATATCGAAGCGGACTGGGCGGCTGGATTCAGGAAGCC
ATGAATCATGTCACCAGGAGCCAGCTGCAGACTTTAAACTCAGTTCAGCATGTGGAAGCGGCAG
AGAAATGACCTGTCCAGACAAGCTGGGGCAACTCATAAACTGGTTTGTCTGCTCCCTGTGCGCC
CCACGAGTGTGTAAACTTTGGAGTAGCCGGCGTCCCAGGACCAGACGGAACCTCTTGCTGGGCA
CTGCCTGTGCCATCTACCTGGGCTTTCTGGTGAGCCAGGTGGGCAAAGGCTCCTTCCAGCATGG
GCAGGCAACTAACAGGGGGCCACCCAACAACCAGGATATCTTCAAGGTACCCTTTCCAGAGATC
CCCCTGGATGGTACCCTGGCCCCTCCAGAGTCGCAGGGCAATGGAAGCACATTGCAGCCCAACG
TGGTGTACATTACTCTACGTTCCAAGCGCAGCAAGCCTGCGAATATCCGTGGCACAGTGAAACC
TAAGCGCAGGAAGAAGTATGCAGTGGCATCTGTAGCCCCTGATCAGGAGGTGCTGGTTAGACCA
TCCCTTATACAGCCGGAAGTTGCACGGGCAGCAGATGCTGAAGTTCCTGGCTATGTTCAGGGTT
ACCTGACTAAGGTTGGTGAACGACCCTGGAGGATGCTGCATGGTCCTAGAGTCAGAGGTTCAAA
CTTGCAGCAGCCTAGGGCCCCAGAGAGCAACATTAGGATTTACAGCGAGAGCGCCCCCTCATGG
CTGAGCAAAGAAGACATCCGCAGAATGCGCCTCCTGGCTGATGGTGAGGTGGCTAGCATCCTAC
CCACCATCTTTGAAGGTGGTACCCGCTTGCTGATGTTGGAAGGAAGCACCTCAGGCTCTGTGCC
TGGCTGCGGCCCTAGCCCCTGTGGGCTTCTCAAGCAACCTCTGGACATGAGTGAAGTGTTTGCC
TTCCACCTGGACAGGATCCTGGGTCTCAACAGGACCCTGCCATCTGTGAGCAGGAAATTAGAGT
TCATCCAAGATGGCCGGCCTCGACCTATCATTCTCTGGGACTCATCTCTAGTACCTTCAAGCAA
TGTTAGCCATTCTTCTGTTAAGATCACCTGGGGAACTTACCAGCAGTTGCTAAAACAGAAGTGC
TGGCTGAACGGCCGGGTTCCCAGACCTGAATGGGGCTGCACTGAAGTCCATCACCATGAGTGGT
CCAAGATGGCTCTCTTTGATTTTTTGTTACAGATTTATAATCGCTTGGATACCAATTGCTGCGG
ATTCAGACCTCGCAAGGAAGACGCCTGTGTACAGAATGGACTGAGGCCAAACTGTGAGGACCAA
AGTTCTGTGACTTTAGCACACATTATCCAGCGAAAGAATGACCCAAGGCATTTGGTCTTCATCA
ACAATAAGGGCTTCTTTGACAGAAGCGAAGACAACTTGAACTTCAAATTGTTGGAAGGCATCAG
AGAGTTTCCTGAATCTGCAGTTTCTGTTTTGAAGAGTCAACACTTAAGGCAGAAGCTCCTGCAG
TCTCTGTTCCTTGATCAGGTTTATTGGGAAAGTCAAGGAGGCAGGCAAGGGATTGAGAAGCTTA
TCGATGTCATAGAGCGGAGAGCCAGAATCCTTATCACCTACATCAACGCACATGGAGCTAGAGT
ATTACCTATGAACGAATGACAAATGGCTTTCCGCCTCAAGGGCTGTACATGTGTCACACTTGGT
TTTTCTTTAATTAAAGGTATCAACCTTAAGTGTTTCTAGGAATGAGGCAGCATAGTTGAATACA
TGAAACTGACGCAGTTTATACCATGAACTAAGTTTAAAAAAGTTTGTAGAGTTTAAAGGTATGC
AGATTCAAGAAGTTTCAGAATAACATATTGCAAAATGCCTGATGATATTTTTTACTTAAGACTC
TGATATGTGTGTCACAGTATTGTCATTGTGCAATGACCCAAATGATTATTCCTACTGATGTTTA
AACCATTTTGATGTCATTTGATGGGACAGTATAAACTGGCTCTTCTAATAAACCATTCCCATGA
CATTTGACTGATCTGACCAGCTGCTAGCAGTGAATTTATTGACATCCTCTCATTGCTGATGGGT
ACAACAGCTATCCCAACCCTATTCAGAGGCAATTCTCCATCAGGAATTTGAGGCATGAGCTCTG
CACGAGCAGCAGTCCTAAAACAACTTCTAAGTAGACATAGAAGTAGATTCATTACAAATGACAA
GTATATTTTCTAGAGCCTCAGATAATCAGCTACCTCTGAAAAACAAAAACCTCTCCTCCTATCC
TTCCCTTTTTAAGAAGTTTATTGACAGCATAGAAATGTCATAACAATGATGTATTAATTCAATT
TTGCTGTCTCAATTATGACCCAATTTATGCCCTGTGGTTAGAAAACTAAGGAAGTGTAAGGCAT
GTTGTTACCTGTTTGAAAATTTACTTGTAGAGTCTCTTACTGCTCTTATTGGTTGGTTGGTTTA
AAAAAAAGTTAAGGTTTCATGTAGCCCAGGCTGGCTTTGAACTCTTTGTTCATCAGTGGCCTTC
TGGTCTTCTGATGCTCTGTCTCCCAAGTGTTGGGATTACAGACAGGTATGTGATGCCATGTCCC
AGAGTGCCCAGTATCACACTTGGGTCTTCAGTCATGTTAGAGAGACACTGTATGACTATGCCCA
TAAACCCAGACCACTTTTAATGAATACTTAACAATTTGTCATTTTATAAAGGATATGCTGTAAT
TTATGAAGTTTTTCTTTGATCACAGAAGATTACATTGGTATAATTAGGTTTCATCTGATTTAAT
TGATATTACCTAGGTATTGATATTAAATTGATAAATTGATATTATCTAGGTATCAGATATTAAA
TACACATATAGATCAGTTCAATACAAGAAGTTGCAATGAAACCCAACACACATGACTGGATCTT
CTCATAAAGAACATATGGATAGAAAGCGTATTGCAACAAATTAAGCAAGATTAAGTCTCAATTA
ATTCTTCCCCAAATCCCTCTACCAAATTTTTCACTGGGTTGAAAGAACTGAGACACACAAGGTT
CATGCTCTGAGTCTGTCTGTCCTGGGAGACTTTGCCAGGTCATTCCTTATCCTACTTATATGGA
GCCTTTGAATCTAGAGCATATCATGTCTCTCTCGATTTCAACTCTTCTGTGCCTTATTTGAAAG
GCCATGAATAGCCAGCTACGGTGATACATAGCTGAAATCCCAGCACCCAGGAAGCTGTGGAAGG
ATTGTAAATCTGAGGCCAGTCCGGTTCATAGTGACATCCTGTCTGAAATGTGCCCCTCCCTTCA
TAGAAGCTGATTTACTGACCTTTTCTTCTTTTGGAAACTTAAAAATAAAGCATTACACATTTTT
ATCATAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA

hide sequence

RefSeq Acc Id:

XM_006232514 ⟹ XP_006232576

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	2	167,345,738 - 167,410,606 (+)	NCBI
mRatBN7.2	2	165,047,689 - 165,112,031 (+)	NCBI
Rnor_6.0	2	178,678,946 - 178,751,459 (+)	NCBI
Rnor_5.0	2	198,087,533 - 198,160,178 (+)	NCBI

Sequence:

show sequence

GCTGTTGCTGTGTTCATTTGCATGCCGCAAGTGCCTTCCCGTCTCCCGCACCCTTGTCTCACGC
TTCCGGTTTTCCACTCATTCCCAGTGACCCCCTTCTTAGTTTTGTCTACTTTTCCTGGTCGTTT
CCCTCATCCAGGACTGGTGGGAGACAAGTGTTAGTCTGCAAACAGCCCAGATGTAAGTCATCTT
TAAAAAGAACCTCGCGTGTCTGAAAACGGTGCAGCAGCCAGCTTACAAGTCATTTTGTGTCGCT
GTTAGAAGGCAGCTGCTTTTAAGGCTGAGCCGAGATGTTTGAAAGGTGGAACACTCTTGACCAT
GAAATATGTTCTCCTTACGTGCCTCAGCCTTTCAAAGTTCTGTGCATTAAGTCAGGGATTCCAT
TCTTCCTGGAGCTAAGCGTGGGGCCAGCTGTAGTCAGCCCCCCTTTCTCCTGGAGAAGGCTGAT
AGGAGTTTAAAAGGCTTGCGGTGGTCAGTGCACAAAGCGTTCCCAGAGCCCGCGGCGACCCTTC
TCTTTTACCTCTGCCTGTTGGAGACCACTTAGATATCGAAGCGGACTGGGCGGCTGGATTCAGG
AAGCCATGAATCATGTCACCAGGAGCCAGCTGCAGACTTTAAACTCAGTTCAGCATGTGGAAGC
GGCAGAGAAATGACCTGTCCAGACAAGCTGGGGCAACTCATAAACTGGTTTGTCTGCTCCCTGT
GCGCCCCACGAGTGTGTAAACTTTGGAGTAGCCGGCGTCCCAGGACCAGACGGAACCTCTTGCT
GGGCACTGCCTGTGCCATCTACCTGGGCTTTCTGGTGAGCCAGGTGGGCAAAGGCTCCTTCCAG
CATGGGCAGGCAACTAACAGGGGGCCACCCAACAACCAGGATATCTTCAAGGTACCCTTTCCAG
AGATCCCCCTGGATGGTACCCTGGCCCCTCCAGAGTCGCAGGGCAATGGAAGCACATTGCAGCC
CAACGTGGTGTACATTACTCTACGTTCCAAGCGCAGCAAGCCTGCGAATATCCGTGGCACAGTG
AAACCTAAGCGCAGGAAGAAGTATGCAGTGGCATCTGTAGCCCCTGATCAGGAGGTGCTGGTTA
GACCATCCCTTATACAGCCGGAAGTTGCACGGGCAGCAGATGCTGAAGTTCCTGGCTATGTTCA
GGGTTACCTGACTAAGGTTGGTGAACGACCCTGGAGGATGCTGCATGGTCCTAGAGTCAGAGGT
TCAAACTTGCAGCAGCCTAGGGCCCCAGAGAGCAACATTAGGATTTACAGCGAGAGCGCCCCCT
CATGGCTGAGCAAAGAAGACATCCGCAGAATGCGCCTCCTGGCTGATGGTGAGGTGGCTAGCAT
CCTACCCACCATCTTTGAAGGTGGTACCCGCTTGCTGATGTTGGAAGGAAGCACCTCAGGCTCT
GTGCCTGGCTGCGGCCCTAGCCCCTGTGGGCTTCTCAAGCAACCTCTGGACATGAGTGAAGTGT
TTGCCTTCCACCTGGACAGGATCCTGGGTCTCAACAGGACCCTGCCATCTGTGAGCAGGAAATT
AGAGTTCATCCAAGATGGCCGGCCTCGACCTATCATTCTCTGGGACTCATCTCTAGTACCTTCA
AGCAATGTTAGCCATTCTTCTGTTAAGATCACCTGGGGAACTTATCAGCAGTTGCTAAAACAGA
AGTGCTGGCTGAACGGCCGGGTTCCCAGACCTGAATGGGGCTGCACTGAAGTCCATCACCACGA
GTGGTCCAAGATGGCTCTCTTTGATTTTTTGTTACAGATTTATAATCGCTTGGATACCAATTGC
TGCGGATTCAGACCTCGCAAGGAAGACGCCTGTGTACAGAATGGACTGAGGCCAAACTGTGAGG
ACCAAAGTTCTGTGACTTTAGCACACATTATCCAGCGAAAGAATGACCCAAGGCATTTGGTCTT
CATCAACAATAAGGGCTTCTTTGACAGAAGCGAAGACAACTTGAACTTCAAATTGTTGGAAGGC
ATCAGAGAGTTTCCTGAATCTGCAGTTTCTGTTTTGAAGAGTCAACACTTAAGGCAGAAGCTCC
TGCAGTCTCTGTTCCTTGATCAGGTTTATTGGGAAAGTCAAGGAGGCAGGCAAGGGATTGAGAA
GCTTATCGATGTCATAGAGCGGAGAGCCAGAATCCTTATCACCTACATCAACGCACATGGAGCT
AGAGTATTACCTATGAACGAATGACAAATGGCTTTCCGCCTCAAGGGCTGTACATGTGTCACAC
TTGGTTTTTCTTTAATTAAAGGTATCAACCTTAAGTGTTTCTAGGAATGAGGCAGCATAGTTGA
ATACATGAAACTGACGCAGTTTATACCATGAACTAAGTTTAAAAAAGTTTGTAGAGTTTAAAGG
TATGCAGATTCAAGAAGTTTCAGAATAACATATTGCAAAATGCCTGATGATATTTTTTACTTAA
GACTCTGATATGTGTGTCACAGTATTGTCATTGTGCAATGACCCAAATGATTATTCCTACTGAT
GTTTAAACCATTTTGATGTCATTTGATGGGACAGTATAAACTGGCTCTTCTAATAAACCATTCC
CATGACATTTGACTGATCTGACCAGCTGCTAGCAGTGAATTTATTGACATCCTCTCATTGCTGA
TGGGTACAACAGCTATCCCAACCCTATTCAGAGGCAATTCTCCATCAGGAATTTGAGGCATGAG
CTCTGCACGAGCAGCAGTCCTAAAACAACTTCTAAGTAGACATAGAAGTAGATTCATTACAAAT
GACAAGTATATTTTCTAGAGCCTCAGATAATCAGCTACCTCTGAAAAACAAAAACCTCTCCTCC
TATCCTTCCCTTTTTAAGAAGTTTATTGACAGCATAGAAATGTCATAACAATGATGTATTAATT
CAATTTTGCTGTCTCAATTATGACCCAATTTATGCCCTGTGGTTAGAAAACTAAGGAAGTGTAA
GGCATGTTGTTACCTGTTTGAAAATTTACTTGTAGAGTCTCTTACTGCTTTTATTGGTTGGTTG
GTTTAAAAAAAAAGTTAAGGTTTCATGTAGCCCAGGCTGGCTTTGAACTCTTTGTTCATCAGTG
GCCTTCTGGTCTTCTGATGCTCTGTCTCCCAAGTGTTGGGATTACAGACAGGTATGTGATGCCA
TGTCCCAGAGTGCCCAGTATCACACTTGGGTCTTCAGTCATGTTAGAGAGACACTGTATGACTA
TGCCCATAAACCCAGACCACTTTTAATGAATACTTAACAATTTGTCATTTTATAAAGGATATGC
TGTAATTTATGAAGTTTTTCTTTGATCACAGAAGATTACATTGGTATAATTAGGTTTCATCTGA
TTTAATTGATATTACCTAGGTATTGATATTAAATTGATAAATTGATATTATCTAGGTATCAGAT
ATTAAATACACATATAGATCAGTTCAATACAAGAAGTTGCAATGAAACCCAACACACATGACTG
GATCTTCTCATAAAGAACATATGGATAGAAAGCGTATTGCAACAAATTAAGCAAGATTAAGTCT
CAATTAATTCTTCCCCAAATCCCTCTACCAAATTTTTCACTGGGTTGAAAGAACTGAGACACAC
AAGGTTCATGCTCTGAGTCTGTCTGTCCTGGGAGACTTTGCCAGGTCATTCCTTATCCTACTTA
TATGGAGCCTTTGAATCTAGAGCATATCATGTCTCTCTCGATTTCAACTCTTCTGTGCCTTATT
TGAAAGGCCATGAATAGCCAGCTACGGTGATACATAGCTGAAATCCCAGCACCCAGGAAGCTGT
GGAAGGATTGTAAATCTGAGGCCAGTCCGGTTCATAGTGACATCCTGTCTGAAATGTGCCCCTC
CCTTCATAGAAGCTGATTTACTGACCTTTTCTTCTTTTGGAAACTTAAAAATAAAGCATTACAC
ATTTTTATCATATTTCTCGTCTCCTCTTTTTCAGTTTTGTTCCTAATGTACACAACATTTTCCA
TATTCTGATGAAGAATAATTTGATATCGATGTCAACTTTTAAAAACACAGCAATATAGACTACA
TCATGGGGGTAAAAACACTTGTGTAGATTATAACTGATACAAACACACCGACATGTCAAAAAGA
AAGCCAAAATGTTAGGTCTAAGAGAAGACAGACCAAGGGAAGAGCTGAGTCTCTTGGCTTGGCT
TTCAAGGCTCACGTCCAAGCACTGCACCTACCATCCTGCAGGTTTCCTTTCCCTTGGCACGCCA
TGTTGAACTTTGCCATGCTCTCTGCAGTTCTCTCCACTGTGACCTGAGAATGACTGGGCCCTGG
TGAGTTCCCATGATGGTTGCTCTCTGTGAGTTTTGTCTCACAAACTATCTTCTCAATCATCCTT
GCGAGCACTTTTACACCCCCACTTAACTTAGAATTAAAAGATTTCTGCCAAGTTGTCTCCTGCC
TTATCAAGACGATCTACATTCATCTGAATACTTTTTTTATTTCTACAGATTTTACCATTTCACC
ATTTACCATTGTGATATTAATTACAGGCATTCTGGCTTCTTAAATCTTGCTTTTGGGGTTGGGG
ATTTAGCTCAGCGGTAGAGCGCTTGCCTAGCACGTGCAAGGCCCTGGGTTCAGAAAAAAAGAAA
AAAAAAAAAAAAAAAGAAAAAAAAATCTTGCTTTTATGTCTCTTAAGTTAGGATGTTTCTGAGC
AGGCTGGCTTTCCCCAGATGTGTCTGACTGTATTTTTGCCTAGTTATTTCAACATGCTTAATTG
TAAGCAAAAAGTGAAAGACCATTGATTATGTTTATAACTTATCTTTTAAGGATTTATTTTTACT
TTTTTATTTGTGTGTATACATATGCATATACATGCATGAGTATGTAGTACCCATGGAAGCCAGA
AGAAGGGCATCAGAATCTCAGAAGCAGTTGTGAGCTTCCTGTCTTGGGGTCTTGGAACTGAACT
AACGTCCTCTGGAAGAGCGGTACTGCTCTCAACAGCTGGGCATCTCCCCAGTCTTTACATTCAT
TTTTTTTAATGATTCGTTTTGCAAACAGTGAGTAATTGATGGTGCATTAGTATTGAATAATAGC
TGCAGGCCAAACTGAATTCTAATAAGTAACATTCTTCTTTCATCGAAAGGATGAGAGTGTTTGT
ATTTCAGATGTGCTCAAAAAATGACTAAGATTTTGTATCTATTAGCTCATTACGTGGTTAATTT
GCTCTAACAGATTTAAAATAGAAGAATTTACCTTGGTTCACATACAGCAGCTTAGTCTGGTGTG
ACCTGTTTCCTTTTAACTGATATGAAAGTGCACATGTGTCTTAGACCCTGTAATAAAAATGCTA
CAAATTAAA

hide sequence

Protein Sequences


Protein RefSeqs	NP_954536	(Get FASTA)	NCBI Sequence Viewer
	XP_006232576	(Get FASTA)	NCBI Sequence Viewer
GenBank Protein	AAH61747	(Get FASTA)	NCBI Sequence Viewer
	EDM00862	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSRNOP00000013525
	ENSRNOP00000013525.3
	ENSRNOP00055001805
	ENSRNOP00060008537
	ENSRNOP00065042868
GenBank Protein	Q6P7B4	(Get FASTA)	NCBI Sequence Viewer

RefSeq Acc Id:

NP_954536 ⟸ NM_199105

- UniProtKB:

Q6P7B4 (UniProtKB/Swiss-Prot)

- Sequence:

show sequence

MTCPDKLGQLINWFVCSLCAPRVCKLWSSRRPRTRRNLLLGTACAIYLGFLVSQVGKGSFQHGQ
ATNRGPPNNQDIFKVPFPEIPLDGTLAPPESQGNGSTLQPNVVYITLRSKRSKPANIRGTVKPK
RRKKYAVASVAPDQEVLVRPSLIQPEVARAADAEVPGYVQGYLTKVGERPWRMLHGPRVRGSNL
QQPRAPESNIRIYSESAPSWLSKEDIRRMRLLADGEVASILPTIFEGGTRLLMLEGSTSGSVPG
CGPSPCGLLKQPLDMSEVFAFHLDRILGLNRTLPSVSRKLEFIQDGRPRPIILWDSSLVPSSNV
SHSSVKITWGTYQQLLKQKCWLNGRVPRPEWGCTEVHHHEWSKMALFDFLLQIYNRLDTNCCGF
RPRKEDACVQNGLRPNCEDQSSVTLAHIIQRKNDPRHLVFINNKGFFDRSEDNLNFKLLEGIRE
FPESAVSVLKSQHLRQKLLQSLFLDQVYWESQGGRQGIEKLIDVIERRARILITYINAHGARVL
PMNE

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RefSeq Acc Id:	XP_006232576 ⟸ XM_006232514
- Peptide Label:	isoform X1
- UniProtKB:	Q6P7B4 (UniProtKB/Swiss-Prot)
- Sequence:	show sequence MTCPDKLGQLINWFVCSLCAPRVCKLWSSRRPRTRRNLLLGTACAIYLGFLVSQVGKGSFQHGQ ATNRGPPNNQDIFKVPFPEIPLDGTLAPPESQGNGSTLQPNVVYITLRSKRSKPANIRGTVKPK RRKKYAVASVAPDQEVLVRPSLIQPEVARAADAEVPGYVQGYLTKVGERPWRMLHGPRVRGSNL QQPRAPESNIRIYSESAPSWLSKEDIRRMRLLADGEVASILPTIFEGGTRLLMLEGSTSGSVPG CGPSPCGLLKQPLDMSEVFAFHLDRILGLNRTLPSVSRKLEFIQDGRPRPIILWDSSLVPSSNV SHSSVKITWGTYQQLLKQKCWLNGRVPRPEWGCTEVHHHEWSKMALFDFLLQIYNRLDTNCCGF RPRKEDACVQNGLRPNCEDQSSVTLAHIIQRKNDPRHLVFINNKGFFDRSEDNLNFKLLEGIRE FPESAVSVLKSQHLRQKLLQSLFLDQVYWESQGGRQGIEKLIDVIERRARILITYINAHGARVL PMNE hide sequence

RefSeq Acc Id:

ENSRNOP00000013525 ⟸ ENSRNOT00000013524

RefSeq Acc Id:

ENSRNOP00000073355 ⟸ ENSRNOT00000088686

Protein Structures

Name	Modeler	Protein Id	AA Range	Protein Structure
AF-Q6P7B4-F1-model_v2	AlphaFold	Q6P7B4	1-516	view protein structure

Transcriptome

eQTL		View at Phenogen
WGCNA		View at Phenogen
Tissue/Strain Expression		View at Phenogen

Promoters

RGD ID:

13691387

Promoter ID:

EPDNEW_R1911

Type:

initiation region

Name:

Fam198b_2

Description:

family with sequence similarity 198, member B

SO ACC ID:

SO:0000170

Source:

EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)

Alternative Promoters:

null; see alsoEPDNEW_R1913 EPDNEW_R1912

Experiment Methods:

Single-end sequencing.

Position:

Rat Assembly	Chr	Position (strand)	Source
Rnor_6.0	2	178,679,008 - 178,679,068	EPDNEW

RGD ID:

13691403

Promoter ID:

EPDNEW_R1912

Type:

initiation region

Name:

Fam198b_3

Description:

family with sequence similarity 198, member B

SO ACC ID:

SO:0000170

Source:

EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)

Alternative Promoters:

null; see alsoEPDNEW_R1911 EPDNEW_R1913

Experiment Methods:

Single-end sequencing.

Position:

Rat Assembly	Chr	Position (strand)	Source
Rnor_6.0	2	178,679,461 - 178,679,521	EPDNEW

RGD ID:

13691388

Promoter ID:

EPDNEW_R1913

Type:

multiple initiation site

Name:

Fam198b_1

Description:

family with sequence similarity 198, member B

SO ACC ID:

SO:0000170

Source:

EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)

Alternative Promoters:

null; see alsoEPDNEW_R1911 EPDNEW_R1912

Experiment Methods:

Single-end sequencing.

Position:

Rat Assembly	Chr	Position (strand)	Source
Rnor_6.0	2	178,680,520 - 178,680,580	EPDNEW

Additional Information

External Database Links

Database	Acc Id	Source(s)
AGR Gene	RGD:735075	AgrOrtholog
BioCyc Gene	G2FUF-52712	BioCyc
Ensembl Genes	ENSRNOG00000010183	Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot
	ENSRNOG00055001437	UniProtKB/Swiss-Prot
	ENSRNOG00060006965	UniProtKB/Swiss-Prot
	ENSRNOG00065030188	UniProtKB/Swiss-Prot
Ensembl Transcript	ENSRNOT00000013524.6	UniProtKB/Swiss-Prot
	ENSRNOT00055002339	UniProtKB/Swiss-Prot
	ENSRNOT00060011414	UniProtKB/Swiss-Prot
	ENSRNOT00065052089	UniProtKB/Swiss-Prot
IMAGE_CLONE	IMAGE:5599685	IMAGE-MGC_LOAD
InterPro	FAM198	UniProtKB/Swiss-Prot
KEGG Report	rno:310540	UniProtKB/Swiss-Prot
MGC_CLONE	MGC:72614	IMAGE-MGC_LOAD
NCBI Gene	310540	ENTREZGENE
PANTHER	GOLGI-ASSOCIATED KINASE 1B	UniProtKB/Swiss-Prot
	PTHR15905	UniProtKB/Swiss-Prot
Pfam	FAM198	UniProtKB/Swiss-Prot
PhenoGen	Gask1b	PhenoGen
RatGTEx	ENSRNOG00000010183	RatGTEx
	ENSRNOG00055001437	RatGTEx
	ENSRNOG00060006965	RatGTEx
	ENSRNOG00065030188	RatGTEx
UniProt	GAK1B_RAT	UniProtKB/Swiss-Prot, ENTREZGENE

Nomenclature History

Date	Current Symbol	Current Name	Previous Symbol	Previous Name	Description	Reference	Status
2018-10-30	Gask1b	golgi associated kinase 1B	Fam198b	family with sequence similarity 198, member B	Nomenclature updated to reflect human and mouse nomenclature	1299863	APPROVED
2010-04-23	Fam198b	family with sequence similarity 198, member B	MGC72614	Unknown (protein for MGC:72614)	Nomenclature updated to reflect human and mouse nomenclature	1299863	APPROVED
2005-09-30	MGC72614				Symbol and Name status set to provisional	70820	PROVISIONAL

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

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