TMT1AP1 (thiol methyltransferase 1A pseudogene 1) - Rat Genome Database

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Gene: TMT1AP1 (thiol methyltransferase 1A pseudogene 1) Homo sapiens
Analyze
Symbol: TMT1AP1
Name: thiol methyltransferase 1A pseudogene 1
RGD ID: 7247007
HGNC Page HGNC:48874
Description:
Type: pseudo (Ensembl: processed_pseudogene)
RefSeq Status: MODEL
Previously known as: methyltransferase like 7A pseudogene 1; METTL7AP1
Latest Assembly: GRCh38 - Human Genome Assembly GRCh38
Position:
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381252,228,707 - 52,233,281 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1252,229,093 - 52,229,588 (-)EnsemblGRCh38hg38GRCh38
GRCh371252,622,491 - 52,627,065 (-)NCBIGRCh37GRCh37hg19GRCh37
Cytogenetic Map12q13.13NCBI
CHM1_11252,588,830 - 52,593,425 (-)NCBICHM1_1
T2T-CHM13v2.01252,192,322 - 52,196,917 (-)NCBIT2T-CHM13v2.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


References

Genomics

miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:205
Count of miRNA genes:201
Interacting mature miRNAs:205
Transcripts:ENST00000547343
Prediction methods:Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system sensory system adipose tissue appendage entire extraembryonic component
High
Medium
Low 2 3 8 1 2 4 6 1 1 6
Below cutoff 276 303 292 57 99 33 791 190 342 36 174 309 26 196 503 1

Sequence

Nucleotide Sequences
GenBank Nucleotide AC021066 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CP068266 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Reference Sequences
RefSeq Acc Id: ENST00000547343
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1252,229,093 - 52,229,588 (-)Ensembl

Additional Information

Database Acc Id Source(s)
COSMIC TMT1AP1 COSMIC
Ensembl Genes ENSG00000257649 Ensembl
GTEx ENSG00000257649 GTEx
HGNC ID HGNC:48874 ENTREZGENE
Human Proteome Map TMT1AP1 Human Proteome Map
NCBI Gene METTL7AP1 ENTREZGENE


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2023-01-23 TMT1AP1  thiol methyltransferase 1A pseudogene 1  METTL7AP1  methyltransferase like 7A pseudogene 1  Symbol and/or name change 19259463 PROVISIONAL