APOOP5 (apolipoprotein O pseudogene 5) - Rat Genome Database

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Gene: APOOP5 (apolipoprotein O pseudogene 5) Homo sapiens
Analyze
Symbol: APOOP5
Name: apolipoprotein O pseudogene 5
RGD ID: 7246270
HGNC Page HGNC:48743
Description: INTERACTS WITH benzo[a]pyrene; valproic acid
Type: pseudo (Ensembl: transcribed_processed_pseudogene)
RefSeq Status: PROVISIONAL
Related Functional Gene: APOO  
Latest Assembly: GRCh38 - Human Genome Assembly GRCh38
Position:
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381659,754,132 - 59,755,191 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1659,754,461 - 59,755,026 (-)EnsemblGRCh38hg38GRCh38
GRCh371659,788,036 - 59,789,095 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 361658,343,396 - 58,346,802 (-)NCBINCBI36Build 36hg18NCBI36
Celera1644,288,742 - 44,289,801 (-)NCBICelera
Cytogenetic Map16q21NCBI
HuRef1645,655,652 - 45,656,711 (-)NCBIHuRef
CHM1_11661,195,844 - 61,196,903 (-)NCBICHM1_1
T2T-CHM13v2.01665,546,357 - 65,547,416 (-)NCBIT2T-CHM13v2.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
References

Genomics

miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:179
Count of miRNA genes:170
Interacting mature miRNAs:174
Transcripts:ENST00000564533, ENST00000564761, ENST00000565921
Prediction methods:Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system sensory system adipose tissue appendage
High
Medium
Low 5 1 1 132 1 8 339 1
Below cutoff 140 221 133 36 206 27 290 206 569 49 124 107 9 50 217

Sequence


Reference Sequences
RefSeq Acc Id: ENST00000564533
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1659,737,926 - 59,754,814 (-)Ensembl
RefSeq Acc Id: ENST00000564761
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1659,754,461 - 59,755,026 (-)Ensembl
RefSeq Acc Id: ENST00000565921
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1659,709,993 - 59,754,848 (-)Ensembl
RefSeq Acc Id: NR_028471
RefSeq Status: PROVISIONAL
Type: NON-CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh381659,754,132 - 59,755,191 (-)NCBI
GRCh371659,788,036 - 59,789,095 (-)NCBI
HuRef1645,655,652 - 45,656,711 (-)NCBI
CHM1_11661,195,844 - 61,196,903 (-)NCBI
T2T-CHM13v2.01665,546,357 - 65,547,416 (-)NCBI
Sequence:

Additional Information

Database Acc Id Source(s)
COSMIC APOOP5 COSMIC
Ensembl Genes ENSG00000260240 Ensembl
GTEx ENSG00000260240 GTEx
HGNC ID HGNC:48743 ENTREZGENE
Human Proteome Map APOOP5 Human Proteome Map
NCBI Gene APOOP5 ENTREZGENE