HNRNPA1P41 (heterogeneous nuclear ribonucleoprotein A1 pseudogene 41) - Rat Genome Database

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Gene: HNRNPA1P41 (heterogeneous nuclear ribonucleoprotein A1 pseudogene 41) Homo sapiens
Analyze
Symbol: HNRNPA1P41
Name: heterogeneous nuclear ribonucleoprotein A1 pseudogene 41
RGD ID: 7246246
HGNC Page HGNC:48770
Description:
Type: pseudo (Ensembl: processed_pseudogene)
RefSeq Status: VALIDATED
Related Functional Gene: HNRNPA1L2  
Latest Assembly: GRCh38 - Human Genome Assembly GRCh38
Position:
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh3894,944,346 - 4,945,962 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl94,944,670 - 4,945,902 (-)EnsemblGRCh38hg38GRCh38
GRCh3794,944,346 - 4,945,962 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 3694,934,338 - 4,976,126 (-)NCBINCBI36Build 36hg18NCBI36
Celera94,869,962 - 4,871,577 (-)NCBICelera
Cytogenetic Map9p24.1NCBI
HuRef94,899,884 - 4,901,500 (-)NCBIHuRef
CHM1_194,944,576 - 4,946,192 (-)NCBICHM1_1
T2T-CHM13v2.094,949,468 - 4,951,083 (-)NCBIT2T-CHM13v2.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


References

Genomics

miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:212
Count of miRNA genes:205
Interacting mature miRNAs:211
Transcripts:ENST00000397777
Prediction methods:Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system sensory system adipose tissue appendage entire extraembryonic component
High
Medium 1
Low 6 29 14 11 26 11 26 2 31 20 50 5 1 25
Below cutoff 931 1178 622 167 544 103 2355 866 1417 105 801 659 65 609 1596 1

Sequence


Reference Sequences
RefSeq Acc Id: ENST00000397777
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl94,944,670 - 4,945,902 (-)Ensembl

Additional Information

Database Acc Id Source(s)
COSMIC HNRNPA1P41 COSMIC
Ensembl Genes ENSG00000220937 Ensembl
GTEx ENSG00000220937 GTEx
HGNC ID HGNC:48770 ENTREZGENE
Human Proteome Map HNRNPA1P41 Human Proteome Map
NCBI Gene HNRNPA1P41 ENTREZGENE