LINC00943 (long intergenic non-protein coding RNA 943)

Gene: LINC00943 (long intergenic non-protein coding RNA 943) Homo sapiens

Analyze

Symbol:

LINC00943

Name:

long intergenic non-protein coding RNA 943

RGD ID:

7245167

HGNC Page

HGNC:48639

Description:

INTERACTS WITH berberine; N-methyl-4-phenylpyridinium

Type:

ncrna (Ensembl: lncRNA)

RefSeq Status:

VALIDATED

Previously known as:

RP11-173C20.1

Allele / Splice:

See ClinVar data

Latest Assembly:

GRCh38 - Human Genome Assembly GRCh38

Position:

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	12	126,737,007 - 126,746,256 (+)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	12	126,723,412 - 126,749,027 (+)	Ensembl	GRCh38		hg38	GRCh38
GRCh37	12	127,221,553 - 127,230,802 (+)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Cytogenetic Map	12	q24.32	NCBI
HuRef	12	124,190,919 - 124,200,168 (+)	NCBI		HuRef
CHM1_1	12	127,041,874 - 127,051,123 (+)	NCBI		CHM1_1
T2T-CHM13v2.0	12	126,744,595 - 126,753,846 (+)	NCBI		T2T-CHM13v2.0

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Annotation Click to see Annotation Detail View

Gene-Chemical Interaction Annotations Click to see Annotation Detail View

berberine (EXP)

N-methyl-4-phenylpyridinium (EXP)

References

Additional References at PubMed

PMID:12477932	PMID:14702039	PMID:32993558	PMID:33208053	PMID:38145786	PMID:38627774

Genomics

Clinical Variants

Name	Type	Condition(s)	Position(s)	Clinical significance
GRCh38/hg38 12q24.31-24.33(chr12:123509825-133191400)x3	copy number gain	See cases [RCV000135535]	Chr12:123509825..133191400 [GRCh38] Chr12:123994372..133767986 [GRCh37] Chr12:122560325..132278059 [NCBI36] Chr12:12q24.31-24.33	pathogenic
GRCh38/hg38 12q24.32(chr12:126587447-127900558)x3	copy number gain	See cases [RCV000136703]	Chr12:126587447..127900558 [GRCh38] Chr12:127071993..128385103 [GRCh37] Chr12:125637946..126951056 [NCBI36] Chr12:12q24.32	uncertain significance
GRCh38/hg38 12q24.31-24.33(chr12:120697672-133202490)x3	copy number gain	See cases [RCV000137651]	Chr12:120697672..133202490 [GRCh38] Chr12:121135475..133779076 [GRCh37] Chr12:119619858..132289149 [NCBI36] Chr12:12q24.31-24.33	pathogenic
GRCh38/hg38 12q24.32(chr12:126309824-127076515)x3	copy number gain	See cases [RCV000137660]	Chr12:126309824..127076515 [GRCh38] Chr12:126794370..127561060 [GRCh37] Chr12:125360323..126127013 [NCBI36] Chr12:12q24.32	likely benign
GRCh38/hg38 12q24.32(chr12:126526398-127998599)x3	copy number gain	See cases [RCV000139449]	Chr12:126526398..127998599 [GRCh38] Chr12:127010944..128483144 [GRCh37] Chr12:125576897..127049097 [NCBI36] Chr12:12q24.32	uncertain significance\|conflicting data from submitters
GRCh38/hg38 12p13.33-q24.33(chr12:121271-133196807)x3	copy number gain	See cases [RCV000139555]	Chr12:121271..133196807 [GRCh38] Chr12:282465..133773393 [GRCh37] Chr12:100698..132283466 [NCBI36] Chr12:12p13.33-q24.33	pathogenic
GRCh38/hg38 12q24.31-24.32(chr12:120718786-127500215)x1	copy number loss	See cases [RCV000142454]	Chr12:120718786..127500215 [GRCh38] Chr12:121156589..127984760 [GRCh37] Chr12:119640972..126550713 [NCBI36] Chr12:12q24.31-24.32	pathogenic
GRCh38/hg38 12q24.32(chr12:125862809-127788730)x3	copy number gain	See cases [RCV000142216]	Chr12:125862809..127788730 [GRCh38] Chr12:126347355..128273275 [GRCh37] Chr12:124913308..126839228 [NCBI36] Chr12:12q24.32	uncertain significance
GRCh38/hg38 12q24.31-24.32(chr12:121917758-127802717)x1	copy number loss	See cases [RCV000143250]	Chr12:121917758..127802717 [GRCh38] Chr12:122355664..128287262 [GRCh37] Chr12:120840047..126853215 [NCBI36] Chr12:12q24.31-24.32	pathogenic
GRCh38/hg38 12q24.21-24.33(chr12:114268403-133201316)x3	copy number gain	See cases [RCV000143656]	Chr12:114268403..133201316 [GRCh38] Chr12:114706208..133777902 [GRCh37] Chr12:113190591..132287975 [NCBI36] Chr12:12q24.21-24.33	pathogenic
GRCh38/hg38 12q24.31-24.33(chr12:122985202-130714574)x1	copy number loss	See cases [RCV000051345]	Chr12:122985202..130714574 [GRCh38] Chr12:123469749..131199119 [GRCh37] Chr12:122035702..129765072 [NCBI36] Chr12:12q24.31-24.33	pathogenic
GRCh38/hg38 12q24.23-24.33(chr12:118165459-133182322)x3	copy number gain	See cases [RCV000050866]	Chr12:118165459..133182322 [GRCh38] Chr12:118603264..133758908 [GRCh37] Chr12:117087647..132268981 [NCBI36] Chr12:12q24.23-24.33	pathogenic
GRCh38/hg38 12q24.31-24.33(chr12:123444758-133191400)x3	copy number gain	See cases [RCV000051151]	Chr12:123444758..133191400 [GRCh38] Chr12:123929305..133767986 [GRCh37] Chr12:122495258..132278059 [NCBI36] Chr12:12q24.31-24.33	pathogenic
GRCh38/hg38 12q24.21-24.33(chr12:115131583-133166920)x3	copy number gain	See cases [RCV000053689]	Chr12:115131583..133166920 [GRCh38] Chr12:115569388..133743506 [GRCh37] Chr12:114053771..132253579 [NCBI36] Chr12:12q24.21-24.33	pathogenic
GRCh38/hg38 12q24.23-24.33(chr12:119417382-133191400)x3	copy number gain	Developmental Delay and additional significant developmental and morphological phenotypes referred for genetic testing [RCV000053691]\|Developmental delay and additional significant developmental and morphological phenotypes referred for genetic testing [RCV000053691]\|See cases [RCV000053691]	Chr12:119417382..133191400 [GRCh38] Chr12:119855187..133767986 [GRCh37] Chr12:118339570..132278059 [NCBI36] Chr12:12q24.23-24.33	pathogenic
GRCh38/hg38 12q24.31-24.33(chr12:123365769-133191400)x3	copy number gain	Developmental Delay and additional significant developmental and morphological phenotypes referred for genetic testing [RCV000053693]\|Developmental delay and additional significant developmental and morphological phenotypes referred for genetic testing [RCV000053693]\|See cases [RCV000053693]	Chr12:123365769..133191400 [GRCh38] Chr12:123850316..133767986 [GRCh37] Chr12:122416269..132278059 [NCBI36] Chr12:12q24.31-24.33	pathogenic
GRCh38/hg38 12q24.32-24.33(chr12:126403612-133166920)x3	copy number gain	See cases [RCV000053715]	Chr12:126403612..133166920 [GRCh38] Chr12:126888158..133743506 [GRCh37] Chr12:125454111..132253579 [NCBI36] Chr12:12q24.32-24.33	pathogenic

miRNA Target Status

Predicted Target Of

	Summary Value
Count of predictions:	708
Count of miRNA genes:	339
Interacting mature miRNAs:	368
Transcripts:	ENST00000345111, ENST00000535118, ENST00000535544, ENST00000537374, ENST00000539315, ENST00000540250, ENST00000541359
Prediction methods:	Miranda, Rnahybrid
Result types:	miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.

Markers in Region

D12S307

Human Assembly	Chr	Position (strand)	Source	JBrowse
GRCh37	12	127,216,405 - 127,216,555	UniSTS	GRCh37
GRCh37	12	127,216,393 - 127,216,553	UniSTS	GRCh37
Build 36	12	125,782,358 - 125,782,508	RGD	NCBI36
Celera	12	126,821,752 - 126,821,890	RGD
Celera	12	126,821,740 - 126,821,888	UniSTS
Cytogenetic Map	12	q24.32	UniSTS
HuRef	12	124,185,783 - 124,185,921	UniSTS
HuRef	12	124,185,771 - 124,185,919	UniSTS
Marshfield Genetic Map	12	148.24	RGD
Genethon Genetic Map	12	149.5	UniSTS
deCODE Assembly Map	12	149.78	UniSTS
Stanford-G3 RH Map	12	5412.0	UniSTS
Whitehead-YAC Contig Map	12		UniSTS
GeneMap99-G3 RH Map	12	5358.0	UniSTS

RH92779

Human Assembly	Chr	Position (strand)	Source	JBrowse
GRCh37	12	127,229,644 - 127,229,773	UniSTS	GRCh37
Build 36	12	125,795,597 - 125,795,726	RGD	NCBI36
Celera	12	126,834,979 - 126,835,108	RGD
Cytogenetic Map	12	q24.32	UniSTS
HuRef	12	124,199,010 - 124,199,139	UniSTS
GeneMap99-GB4 RH Map	12	488.12	UniSTS

RH92063

Human Assembly	Chr	Position (strand)	Source	JBrowse
GRCh37	12	127,230,509 - 127,230,639	UniSTS	GRCh37
Build 36	12	125,796,462 - 125,796,592	RGD	NCBI36
Celera	12	126,835,844 - 126,835,974	RGD
Cytogenetic Map	12	q24.32	UniSTS
HuRef	12	124,199,875 - 124,200,005	UniSTS
GeneMap99-GB4 RH Map	12	487.6	UniSTS

D12S307

Human Assembly	Chr	Position (strand)	Source
Cytogenetic Map	12	q24.32	UniSTS
Marshfield Genetic Map	12	148.24	UniSTS
Genethon Genetic Map	12	149.5	UniSTS
deCODE Assembly Map	12	149.78	UniSTS
Whitehead-YAC Contig Map	12		UniSTS

Expression

RNA-SEQ Expression

High: > 1000 TPM value Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system

circulatory system

endocrine system

exocrine system

hemolymphoid system

hepatobiliary system

integumental system

musculoskeletal system

nervous system

renal system

reproductive system

respiratory system

sensory system

adipose tissue

appendage

High

Medium

342

Low

111

439

922

148

Below cutoff

1836

1934

1220

427

1074

272

2934

1448

2080

190

743

1214

157

1057

1920

View RNA-SEQ Expression Data

Sequence

Nucleotide Sequences


RefSeq Transcripts	NR_038256	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	AA400092	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AC069235	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AK091521	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AL567219	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AY070435	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	BC039096	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	CP068266	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	DB450910	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

RefSeq Acc Id:

ENST00000345111

Type:

CODING

Position:

Human Assembly	Chr	Position (strand)	Source
GRCh38.p14 Ensembl	12	126,742,736 - 126,746,236 (+)	Ensembl

RefSeq Acc Id:

ENST00000535118

Type:

CODING

Position:

Human Assembly	Chr	Position (strand)	Source
GRCh38.p14 Ensembl	12	126,737,007 - 126,745,336 (+)	Ensembl

RefSeq Acc Id:

ENST00000535544

Type:

CODING

Position:

Human Assembly	Chr	Position (strand)	Source
GRCh38.p14 Ensembl	12	126,741,665 - 126,746,252 (+)	Ensembl

RefSeq Acc Id:

ENST00000537374

Type:

CODING

Position:

Human Assembly	Chr	Position (strand)	Source
GRCh38.p14 Ensembl	12	126,726,270 - 126,745,326 (+)	Ensembl

RefSeq Acc Id:

ENST00000539315

Type:

CODING

Position:

Human Assembly	Chr	Position (strand)	Source
GRCh38.p14 Ensembl	12	126,726,600 - 126,745,528 (+)	Ensembl

RefSeq Acc Id:

ENST00000540250

Type:

CODING

Position:

Human Assembly	Chr	Position (strand)	Source
GRCh38.p14 Ensembl	12	126,734,909 - 126,745,332 (+)	Ensembl

RefSeq Acc Id:

ENST00000541359

Type:

CODING

Position:

Human Assembly	Chr	Position (strand)	Source
GRCh38.p14 Ensembl	12	126,742,150 - 126,745,332 (+)	Ensembl

RefSeq Acc Id:

ENST00000616373

Type:

CODING

Position:

Human Assembly	Chr	Position (strand)	Source
GRCh38.p14 Ensembl	12	126,744,769 - 126,745,326 (+)	Ensembl

RefSeq Acc Id:

ENST00000653920

Type:

CODING

Position:

Human Assembly	Chr	Position (strand)	Source
GRCh38.p14 Ensembl	12	126,726,265 - 126,746,255 (+)	Ensembl

RefSeq Acc Id:

ENST00000654123

Type:

CODING

Position:

Human Assembly	Chr	Position (strand)	Source
GRCh38.p14 Ensembl	12	126,737,025 - 126,746,256 (+)	Ensembl

RefSeq Acc Id:

ENST00000654173

Type:

CODING

Position:

Human Assembly	Chr	Position (strand)	Source
GRCh38.p14 Ensembl	12	126,737,046 - 126,746,256 (+)	Ensembl

RefSeq Acc Id:

ENST00000654558

Type:

CODING

Position:

Human Assembly	Chr	Position (strand)	Source
GRCh38.p14 Ensembl	12	126,741,419 - 126,745,332 (+)	Ensembl

RefSeq Acc Id:

ENST00000655433

Type:

CODING

Position:

Human Assembly	Chr	Position (strand)	Source
GRCh38.p14 Ensembl	12	126,737,007 - 126,745,336 (+)	Ensembl

RefSeq Acc Id:

ENST00000656138

Type:

CODING

Position:

Human Assembly	Chr	Position (strand)	Source
GRCh38.p14 Ensembl	12	126,726,562 - 126,749,027 (+)	Ensembl

RefSeq Acc Id:

ENST00000656166

Type:

CODING

Position:

Human Assembly	Chr	Position (strand)	Source
GRCh38.p14 Ensembl	12	126,737,046 - 126,740,460 (+)	Ensembl

RefSeq Acc Id:

ENST00000656659

Type:

CODING

Position:

Human Assembly	Chr	Position (strand)	Source
GRCh38.p14 Ensembl	12	126,737,025 - 126,745,332 (+)	Ensembl

RefSeq Acc Id:

ENST00000656695

Type:

CODING

Position:

Human Assembly	Chr	Position (strand)	Source
GRCh38.p14 Ensembl	12	126,737,053 - 126,746,905 (+)	Ensembl

RefSeq Acc Id:

ENST00000658458

Type:

CODING

Position:

Human Assembly	Chr	Position (strand)	Source
GRCh38.p14 Ensembl	12	126,723,416 - 126,746,905 (+)	Ensembl

RefSeq Acc Id:

ENST00000659292

Type:

CODING

Position:

Human Assembly	Chr	Position (strand)	Source
GRCh38.p14 Ensembl	12	126,737,013 - 126,746,256 (+)	Ensembl

RefSeq Acc Id:

ENST00000659340

Type:

CODING

Position:

Human Assembly	Chr	Position (strand)	Source
GRCh38.p14 Ensembl	12	126,736,998 - 126,746,256 (+)	Ensembl

RefSeq Acc Id:

ENST00000659485

Type:

CODING

Position:

Human Assembly	Chr	Position (strand)	Source
GRCh38.p14 Ensembl	12	126,737,053 - 126,745,320 (+)	Ensembl

RefSeq Acc Id:

ENST00000659587

Type:

CODING

Position:

Human Assembly	Chr	Position (strand)	Source
GRCh38.p14 Ensembl	12	126,736,998 - 126,746,256 (+)	Ensembl

RefSeq Acc Id:

ENST00000660082

Type:

CODING

Position:

Human Assembly	Chr	Position (strand)	Source
GRCh38.p14 Ensembl	12	126,737,003 - 126,745,336 (+)	Ensembl

RefSeq Acc Id:

ENST00000660396

Type:

CODING

Position:

Human Assembly	Chr	Position (strand)	Source
GRCh38.p14 Ensembl	12	126,737,053 - 126,745,332 (+)	Ensembl

RefSeq Acc Id:

ENST00000660709

Type:

CODING

Position:

Human Assembly	Chr	Position (strand)	Source
GRCh38.p14 Ensembl	12	126,737,025 - 126,745,336 (+)	Ensembl

RefSeq Acc Id:

ENST00000661264

Type:

CODING

Position:

Human Assembly	Chr	Position (strand)	Source
GRCh38.p14 Ensembl	12	126,726,483 - 126,746,237 (+)	Ensembl

RefSeq Acc Id:

ENST00000661435

Type:

CODING

Position:

Human Assembly	Chr	Position (strand)	Source
GRCh38.p14 Ensembl	12	126,737,007 - 126,746,256 (+)	Ensembl

RefSeq Acc Id:

ENST00000661679

Type:

CODING

Position:

Human Assembly	Chr	Position (strand)	Source
GRCh38.p14 Ensembl	12	126,737,053 - 126,746,245 (+)	Ensembl

RefSeq Acc Id:

ENST00000662118

Type:

CODING

Position:

Human Assembly	Chr	Position (strand)	Source
GRCh38.p14 Ensembl	12	126,734,947 - 126,745,326 (+)	Ensembl

RefSeq Acc Id:

ENST00000662393

Type:

CODING

Position:

Human Assembly	Chr	Position (strand)	Source
GRCh38.p14 Ensembl	12	126,737,060 - 126,745,326 (+)	Ensembl

RefSeq Acc Id:

ENST00000662520

Type:

CODING

Position:

Human Assembly	Chr	Position (strand)	Source
GRCh38.p14 Ensembl	12	126,737,025 - 126,746,914 (+)	Ensembl

RefSeq Acc Id:

ENST00000663365

Type:

CODING

Position:

Human Assembly	Chr	Position (strand)	Source
GRCh38.p14 Ensembl	12	126,737,051 - 126,745,325 (+)	Ensembl

RefSeq Acc Id:

ENST00000663771

Type:

CODING

Position:

Human Assembly	Chr	Position (strand)	Source
GRCh38.p14 Ensembl	12	126,736,980 - 126,746,256 (+)	Ensembl

RefSeq Acc Id:

ENST00000664572

Type:

CODING

Position:

Human Assembly	Chr	Position (strand)	Source
GRCh38.p14 Ensembl	12	126,737,051 - 126,745,326 (+)	Ensembl

RefSeq Acc Id:

ENST00000665222

Type:

CODING

Position:

Human Assembly	Chr	Position (strand)	Source
GRCh38.p14 Ensembl	12	126,735,181 - 126,745,326 (+)	Ensembl

RefSeq Acc Id:

ENST00000665596

Type:

CODING

Position:

Human Assembly	Chr	Position (strand)	Source
GRCh38.p14 Ensembl	12	126,737,053 - 126,746,916 (+)	Ensembl

RefSeq Acc Id:

ENST00000665641

Type:

CODING

Position:

Human Assembly	Chr	Position (strand)	Source
GRCh38.p14 Ensembl	12	126,736,986 - 126,745,332 (+)	Ensembl

RefSeq Acc Id:

ENST00000665789

Type:

CODING

Position:

Human Assembly	Chr	Position (strand)	Source
GRCh38.p14 Ensembl	12	126,737,025 - 126,745,332 (+)	Ensembl

RefSeq Acc Id:

ENST00000665976

Type:

CODING

Position:

Human Assembly	Chr	Position (strand)	Source
GRCh38.p14 Ensembl	12	126,726,230 - 126,746,229 (+)	Ensembl

RefSeq Acc Id:

ENST00000665993

Type:

CODING

Position:

Human Assembly	Chr	Position (strand)	Source
GRCh38.p14 Ensembl	12	126,726,512 - 126,746,256 (+)	Ensembl

RefSeq Acc Id:

ENST00000666484

Type:

CODING

Position:

Human Assembly	Chr	Position (strand)	Source
GRCh38.p14 Ensembl	12	126,737,091 - 126,745,332 (+)	Ensembl

RefSeq Acc Id:

ENST00000667256

Type:

CODING

Position:

Human Assembly	Chr	Position (strand)	Source
GRCh38.p14 Ensembl	12	126,723,412 - 126,746,256 (+)	Ensembl

RefSeq Acc Id:

ENST00000667312

Type:

CODING

Position:

Human Assembly	Chr	Position (strand)	Source
GRCh38.p14 Ensembl	12	126,723,416 - 126,745,326 (+)	Ensembl

RefSeq Acc Id:

ENST00000667375

Type:

CODING

Position:

Human Assembly	Chr	Position (strand)	Source
GRCh38.p14 Ensembl	12	126,737,051 - 126,745,326 (+)	Ensembl

RefSeq Acc Id:

ENST00000667490

Type:

CODING

Position:

Human Assembly	Chr	Position (strand)	Source
GRCh38.p14 Ensembl	12	126,736,980 - 126,746,256 (+)	Ensembl

RefSeq Acc Id:

ENST00000668231

Type:

CODING

Position:

Human Assembly	Chr	Position (strand)	Source
GRCh38.p14 Ensembl	12	126,737,013 - 126,746,225 (+)	Ensembl

RefSeq Acc Id:

ENST00000668611

Type:

CODING

Position:

Human Assembly	Chr	Position (strand)	Source
GRCh38.p14 Ensembl	12	126,737,025 - 126,746,256 (+)	Ensembl

RefSeq Acc Id:

ENST00000669031

Type:

CODING

Position:

Human Assembly	Chr	Position (strand)	Source
GRCh38.p14 Ensembl	12	126,737,053 - 126,747,267 (+)	Ensembl

RefSeq Acc Id:

ENST00000669417

Type:

CODING

Position:

Human Assembly	Chr	Position (strand)	Source
GRCh38.p14 Ensembl	12	126,737,007 - 126,746,256 (+)	Ensembl

RefSeq Acc Id:

ENST00000669542

Type:

CODING

Position:

Human Assembly	Chr	Position (strand)	Source
GRCh38.p14 Ensembl	12	126,737,022 - 126,746,256 (+)	Ensembl

RefSeq Acc Id:

ENST00000670225

Type:

CODING

Position:

Human Assembly	Chr	Position (strand)	Source
GRCh38.p14 Ensembl	12	126,723,424 - 126,745,326 (+)	Ensembl

RefSeq Acc Id:

ENST00000670324

Type:

CODING

Position:

Human Assembly	Chr	Position (strand)	Source
GRCh38.p14 Ensembl	12	126,734,966 - 126,745,332 (+)	Ensembl

RefSeq Acc Id:

ENST00000670760

Type:

CODING

Position:

Human Assembly	Chr	Position (strand)	Source
GRCh38.p14 Ensembl	12	126,737,019 - 126,746,256 (+)	Ensembl

RefSeq Acc Id:

NR_038256

RefSeq Status:

VALIDATED

Type:

NON-CODING

Position:

Human Assembly	Chr	Position (strand)	Source
GRCh38	12	126,737,007 - 126,746,256 (+)	NCBI
GRCh37	12	127,221,553 - 127,230,802 (+)	NCBI
HuRef	12	124,190,919 - 124,200,168 (+)	NCBI
CHM1_1	12	127,041,874 - 127,051,123 (+)	NCBI
T2T-CHM13v2.0	12	126,744,595 - 126,753,846 (+)	NCBI

Sequence:

show sequence

AGTCTTGGAACTAGGATTGGGGTGGGGTTCATCCCACCCAGACCACAGAGACTGAAAATAAGAA
AGGGGTGAGGCCTAAGGGACAATCAGGATGTTTTTCAGAGAGAAGTGTGGATGCTGGACAGGAA
GAACCACAGATACCAGATACGGGACATACTTTATTCAGCTGGGTGCTGAAAAAGAATCTTGGAA
ATTAGGAAACTGAATGAGGCCTCATTTCACACTCAGAATGTGGGTTGCAATAGTCACTTCCTCT
GCTGCTGGGAAAGAAAGAATTATACTACCTTTTGAATTTTGGATTAAGGAGAGAGGTGTTGGCT
TGTCAAACTACCATGTATTCCTCAAGACATATTTTTGTGGCTTTATAAAATTCAATATATATGT
CTAAATTCAAAAATATTTTGTTGCAATCTGGCCCTTGGACAAACTGAGGCCCTAGCAACTGATG
TTTATGGCTTTCCGTAGAACCTTTCAGATAAAATTTACACAGCATTTTACTGCAGCTATTTCAC
ACAAAGCAGAGGATTTTGCCACAAAACTGAAAGAAAAAAGAAACTGCATTCTTAAATTTTTCAT
AAATCAAAAGGTATAAAAATATCTACCTAAACGATAAAGGAGATGAGAAACCCCACCCATGATG
GGAAGAAAGCCTATTTCAGTTTTGCCTTTACTTCAAGTTCTTTTTTCCATATCTGGAATGCAAT
CAGAATTTTAATCTTGCCTTGGGTTCCTCCTGGATTTGGGGAGAAGACAAAACCTGAAAATCTC
TAATCTGCATGTGTTCAGCTGCGTATCTTCTGGATACGGAAGGATCACACTGCACAGAGTGCTG
GACTTGCAGGAGCCCCGCTTCTCAACCTCCATCGCTTTATGAATGAATTCACCAGAAAGAAAAG
GAAGAATCAACACTTTCAGAGATGGAGCCTGTTGAGCCACAGTACCAACTAGTCAATGCTGAAT
CGACTTCTCCCTTTCTACATTGCCTGAGAGAAGTCATTGGGGAATACTCTAGAGTCAAGGGATT
GGATTGTGGATTGCATTGGTGGTTTTCCTCAGTTTCCTCATCTTCTCCACAAGTTTCTACATAT
CGAATGCAGAGCAGCCCTTCTTCAAAGGACCTCCTACGGAAGCTGCTAAGGAACTCAGTCTGTA
GCTCTGCGTGGAGCCATGTGTAAACACTGAACTGAGACCTGCCACCTCCTACTACCTAAGGGCC
CATTTTCATCTGATATCATCCCCCAGAAACAAACTCATGATGACTTCCATGTTTTTTTTAGATT
AGATACATGGAGAATTTTCCTTTCCCTTAGAATTAAAATCCTGCATTCTAATTTTCAGTAAGCT
TTTTTATTTCTGAATAATTTTAAATTTAAAGAGAAGTTGCAAAGATAGTATAGAATGTTCCCTT
ATACCTGTTTTTATTTAGAGTGATGTTCCCAGGAGAAATGATAATGCAGCAATGGACAAGAACA
GGAACAAGAGACAGTCTTACCATCTTCTTACAATTTATAGATGGGACAGTGGAAAGAGAAGCCA
CATCGGGGTTGGGCATGCAGAGACCTGGTCCTAAATCTGTGTGACTTTTGCGAAATCCTTTTGC
CTCACAGAGCTCTAGGTTCTTATCTGTCAAACAGGAACCAGACCATCAGATCCGTAGAGATCCA
ACCAATGAAGGAGACTTCGAAAACTTCACATTGCCGTGTCAATGTGAGGTTGCTGGATGGTTAT
GACAAGAAATCACATTAAATTCACTGGGGTAACATTGTTCATGAAACGGGATAATGTGTTTCAG
CGATGAACCACCCATGGCCTTACTACAGACATATTTCCACTTTGAAAATGTGTGTGAGTGTACA
TGTCTGTGTGTGAGGCAGAGATTAGAAAGTGTAAATGTGTGCGTTTTCATTTTACACATCTTAC
ATTTTCCTTTAATTTGTTTGAAAGCCTGTTTTGTTTGTGGCTTCCATTCCTGGAAGTCCCATGA
GTTGTTAGTGGTGAAGATGGAACAGATGTGTCCAACCCGGGGGACTCCTGCCCTCAGGGACTGA
GCAGCTGCAAACCTCTCTCTCATCTGATTCCACTGTTTCTTCCACATGTACACATCATGAGAAA
TATTGTTCAATCAATATCTTCCCTTAAATCAACTCATATGCTTATTTACATGAATTTACCTAAA
ACAGAAACTTGATATCACTTCTGTAAATGAAAAAATTAAACTTTCTGGCTTTAAATAAAGCATA
ACAATAATAATCATGTCAAAA

hide sequence

Protein Sequences


GenBank Protein	AAL65262	(Get FASTA)	NCBI Sequence Viewer

Promoters

RGD ID:

15096680

Promoter ID:

EPDNEWNC_H1511

Type:

initiation region

Name:

LINC00943_2

Description:

long intergenic non-protein coding RNA 943 [Source:HGNCSymbol;Acc:HGNC:48639]

SO ACC ID:

SO:0000170

Source:

EPDNEWNC (Eukaryotic Promoter Database, http://epd.vital-it.ch/)

Experiment Methods:

Single-end sequencing.; Paired-end sequencing.

Position:

Human Assembly	Chr	Position (strand)	Source
GRCh38	12	126,737,053 - 126,737,113	EPDNEWNC

Additional Information

External Database Links

Database	Acc Id	Source(s)
COSMIC	LINC00943	COSMIC
Ensembl Genes	ENSG00000189238	Ensembl, ENTREZGENE
Ensembl Transcript	ENST00000659340	ENTREZGENE
GTEx	ENSG00000189238	GTEx
HGNC ID	HGNC:48639	ENTREZGENE
Human Proteome Map	LINC00943	Human Proteome Map
NCBI Gene	LINC00943	ENTREZGENE
RNAcentral	URS000075E332	RNACentral

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

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