Gene-Chemical Interaction Annotations
Click to see Annotation Detail View
References
References - curated
Genomics
Variants
Clinical Variants
miRNA Target Status
Predicted Target Of
Summary Value | Count of predictions: | 307 | Count of miRNA genes: | 248 | Interacting mature miRNAs: | 257 | Transcripts: | ENST00000504245, ENST00000559012, ENST00000560341 | Prediction methods: | Microtar, Miranda, Rnahybrid | Result types: | miRGate_prediction | |
The detailed report is available here: | Full Report | CSV | TAB | Printer | ||||
miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/). For more information about miRGate, see PMID:25858286 or access the full paper here. |
Markers in Region
D1S1423 |
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Expression
RNA-SEQ Expression
High: > 1000 TPM value
Medium: Between 11 and 1000 TPMLow: Between 0.5 and 10 TPM Below Cutoff: < 0.5 TPM
alimentary part of gastrointestinal system | circulatory system | endocrine system | exocrine system | hemolymphoid system | hepatobiliary system | integumental system | musculoskeletal system | nervous system | renal system | reproductive system | respiratory system | sensory system | visual system | adipose tissue | appendage | entire extraembryonic component | pharyngeal arch | |
High | ||||||||||||||||||
Medium | 31 | 21 | 331 | 5 | 104 | 6 | 27 | 19 | 392 | 17 | 122 | 308 | 2 | 19 | ||||
Low | 2407 | 2747 | 1389 | 610 | 1644 | 453 | 4302 | 2166 | 3342 | 399 | 1332 | 1305 | 171 | 1 | 1201 | 2749 | 6 | 2 |
Below cutoff | 1 | 223 | 6 | 9 | 203 | 6 | 28 | 12 | 3 | 6 | 3 | 1 | 20 |
Sequence
Nucleotide Sequences
RefSeq Acc Id: | ENST00000504245 | ||||||||
Type: | CODING | ||||||||
Position: |
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RefSeq Acc Id: | ENST00000559012 | ||||||||
Type: | CODING | ||||||||
Position: |
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RefSeq Acc Id: | ENST00000560341 | ||||||||
Type: | CODING | ||||||||
Position: |
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RefSeq Acc Id: | ENST00000655221 | ||||||||
Type: | CODING | ||||||||
Position: |
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RefSeq Acc Id: | ENST00000660446 | ||||||||
Type: | CODING | ||||||||
Position: |
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RefSeq Acc Id: | ENST00000661955 | ||||||||
Type: | CODING | ||||||||
Position: |
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RefSeq Acc Id: | ENST00000667323 | ||||||||
Type: | CODING | ||||||||
Position: |
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RefSeq Acc Id: | ENST00000668306 | ||||||||
Type: | CODING | ||||||||
Position: |
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RefSeq Acc Id: | ENST00000692845 | ||||||||
Type: | CODING | ||||||||
Position: |
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RefSeq Acc Id: | ENST00000702074 | ||||||||
Type: | CODING | ||||||||
Position: |
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RefSeq Acc Id: | NR_040059 | ||||||||||||||||||||||||
RefSeq Status: | VALIDATED | ||||||||||||||||||||||||
Type: | NON-CODING | ||||||||||||||||||||||||
Position: |
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Sequence: |
RefSeq Acc Id: | NR_040060 | ||||||||||||||||||||||||
RefSeq Status: | VALIDATED | ||||||||||||||||||||||||
Type: | NON-CODING | ||||||||||||||||||||||||
Position: |
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Sequence: |
RefSeq Acc Id: | NR_040061 | ||||||||||||||||||||||||
RefSeq Status: | VALIDATED | ||||||||||||||||||||||||
Type: | NON-CODING | ||||||||||||||||||||||||
Position: |
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Sequence: |
RefSeq Acc Id: | NR_040062 | ||||||||||||||||||||||||
RefSeq Status: | VALIDATED | ||||||||||||||||||||||||
Type: | NON-CODING | ||||||||||||||||||||||||
Position: |
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Sequence: |
Promoters
RGD ID: | 15096877 | ||||||||
Promoter ID: | EPDNEWNC_H1708 | ||||||||
Type: | initiation region | ||||||||
Name: | SRP14-AS1_1 | ||||||||
Description: | SRP14 antisense RNA1 (head to head) [Source:HGNCSymbol;Acc:HGNC:48619] | ||||||||
SO ACC ID: | SO:0000170 | ||||||||
Source: | EPDNEWNC (Eukaryotic Promoter Database, http://epd.vital-it.ch/) | ||||||||
Experiment Methods: | Single-end sequencing.; Paired-end sequencing. | ||||||||
Position: |
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Additional Information
External Database Links
Database | Acc Id | Source(s) |
COSMIC | SRP14-DT | COSMIC |
Ensembl Genes | ENSG00000248508 | Ensembl, ENTREZGENE |
Ensembl Transcript | ENST00000504245 | ENTREZGENE |
ENST00000560341 | ENTREZGENE | |
ENST00000660446 | ENTREZGENE | |
GTEx | ENSG00000248508 | GTEx |
HGNC ID | HGNC:48619 | ENTREZGENE |
Human Proteome Map | SRP14-DT | Human Proteome Map |
NCBI Gene | SRP14-AS1 | ENTREZGENE |
RNAcentral | URS000075A00B | RNACentral |
URS000075BA20 | RNACentral | |
URS000075DB10 | RNACentral | |
URS000075DC42 | RNACentral |
Nomenclature History
Date | Current Symbol | Current Name | Previous Symbol | Previous Name | Description | Reference | Status |
---|---|---|---|---|---|---|---|
2021-04-26 | SRP14-DT | SRP14 divergent transcript | SRP14-AS1 | SRP14 antisense RNA1 (head to head) | Symbol and/or name change | 19259463 | PROVISIONAL |