CSPG4P11 (chondroitin sulfate proteoglycan 4 pseudogene 11) - Rat Genome Database

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Gene: CSPG4P11 (chondroitin sulfate proteoglycan 4 pseudogene 11) Homo sapiens
Analyze
Symbol: CSPG4P11
Name: chondroitin sulfate proteoglycan 4 pseudogene 11
RGD ID: 7243276
HGNC Page HGNC:48363
Description:
Type: pseudo (Ensembl: transcribed_unprocessed_pseudogene)
RefSeq Status: INFERRED
Related Functional Gene: CSPG4  
Latest Assembly: GRCh38 - Human Genome Assembly GRCh38
Position:
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381584,186,820 - 84,192,179 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1584,186,752 - 84,197,384 (+)EnsemblGRCh38hg38GRCh38
GRCh371584,855,572 - 84,860,931 (+)NCBIGRCh37GRCh37hg19GRCh37
Cytogenetic Map15q25.2NCBI
CHM1_11584,865,782 - 84,871,206 (-)NCBICHM1_1
T2T-CHM13v2.01582,052,792 - 82,058,153 (+)NCBIT2T-CHM13v2.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


References

Genomics

miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:362
Count of miRNA genes:340
Interacting mature miRNAs:361
Transcripts:ENST00000560634
Prediction methods:Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system sensory system adipose tissue appendage entire extraembryonic component
High
Medium 6
Low 128 135 61 47 85 49 499 74 415 96 362 182 4 8 391 1
Below cutoff 2152 2113 1428 381 673 231 3628 1894 2827 252 1039 1338 155 1166 2211 1

Sequence


Reference Sequences
RefSeq Acc Id: ENST00000560634
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1584,186,752 - 84,197,384 (+)Ensembl

Additional Information

Database Acc Id Source(s)
COSMIC CSPG4P11 COSMIC
Ensembl Genes ENSG00000259726 Ensembl
GTEx ENSG00000259726 GTEx
HGNC ID HGNC:48363 ENTREZGENE
Human Proteome Map CSPG4P11 Human Proteome Map
NCBI Gene CSPG4P11 ENTREZGENE