NPM1P36 (nucleophosmin 1 pseudogene 36) - Rat Genome Database

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Gene: NPM1P36 (nucleophosmin 1 pseudogene 36) Homo sapiens
Analyze
Symbol: NPM1P36
Name: nucleophosmin 1 pseudogene 36
RGD ID: 7241729
HGNC Page HGNC:45215
Description:
Type: pseudo (Ensembl: processed_pseudogene)
RefSeq Status: INFERRED
Previously known as: nucleophosmin 1 (nucleolar phosphoprotein B23, numatrin) pseudogene 36
Related Functional Gene: NPM1  
Latest Assembly: GRCh38 - Human Genome Assembly GRCh38
Position:
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38655,939,753 - 55,940,720 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl655,939,790 - 55,940,624 (-)EnsemblGRCh38hg38GRCh38
GRCh37655,804,551 - 55,805,518 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 36655,912,544 - 55,913,381 (-)NCBINCBI36Build 36hg18NCBI36
Celera657,465,791 - 57,466,625 (-)NCBICelera
Cytogenetic Map6p12.1NCBI
HuRef655,639,693 - 55,640,527 (-)NCBIHuRef
CHM1_1655,807,541 - 55,808,375 (-)NCBICHM1_1
T2T-CHM13v2.0655,779,332 - 55,780,299 (-)NCBIT2T-CHM13v2.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


References

Genomics

miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:74
Count of miRNA genes:67
Interacting mature miRNAs:67
Transcripts:ENST00000415681
Prediction methods:Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system sensory system adipose tissue appendage entire extraembryonic component
High
Medium
Low 5 3 1 4 2
Below cutoff 78 56 18 11 24 4 113 63 75 11 102 26 7 22 82 1

Sequence


Reference Sequences
RefSeq Acc Id: ENST00000415681
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl655,939,790 - 55,940,624 (-)Ensembl

Additional Information

Database Acc Id Source(s)
COSMIC NPM1P36 COSMIC
Ensembl Genes ENSG00000214604 Ensembl, ENTREZGENE
GTEx ENSG00000214604 GTEx
HGNC ID HGNC:45215 ENTREZGENE
Human Proteome Map NPM1P36 Human Proteome Map
NCBI Gene NPM1P36 ENTREZGENE


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2016-06-30 NPM1P36  nucleophosmin 1 pseudogene 36    nucleophosmin 1 (nucleolar phosphoprotein B23, numatrin) pseudogene 36  Symbol and/or name change 5135510 APPROVED