CACYBPP1 (calcyclin binding protein pseudogene 1) - Rat Genome Database

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Gene: CACYBPP1 (calcyclin binding protein pseudogene 1) Homo sapiens
Analyze
Symbol: CACYBPP1
Name: calcyclin binding protein pseudogene 1
RGD ID: 7241100
HGNC Page HGNC:45122
Description:
Type: pseudo (Ensembl: processed_pseudogene)
RefSeq Status: INFERRED
Related Functional Gene: CACYBP  
Latest Assembly: GRCh38 - Human Genome Assembly GRCh38
Position:
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381084,454,499 - 84,456,161 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1084,454,679 - 84,456,056 (-)EnsemblGRCh38hg38GRCh38
GRCh371086,214,255 - 86,215,917 (-)NCBIGRCh37GRCh37hg19GRCh37
Celera1080,209,386 - 80,210,749 (-)NCBICelera
Cytogenetic Map10q23.1NCBI
HuRef1080,059,881 - 80,061,250 (-)NCBIHuRef
CHM1_11086,496,443 - 86,497,810 (-)NCBICHM1_1
T2T-CHM13v2.01085,333,017 - 85,334,683 (-)NCBIT2T-CHM13v2.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


References

Genomics

miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:50
Count of miRNA genes:50
Interacting mature miRNAs:50
Transcripts:ENST00000438592
Prediction methods:Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system sensory system adipose tissue appendage entire extraembryonic component
High
Medium
Low 15 20 20 2 71 1 95 4 33 12 37 33 1 9 53 1
Below cutoff 733 884 594 179 493 81 1833 488 1233 87 637 693 99 402 1130

Sequence


Reference Sequences
RefSeq Acc Id: ENST00000438592
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1084,454,679 - 84,456,056 (-)Ensembl

Additional Information

Database Acc Id Source(s)
COSMIC CACYBPP1 COSMIC
Ensembl Genes ENSG00000225928 Ensembl
GTEx ENSG00000225928 GTEx
HGNC ID HGNC:45122 ENTREZGENE
Human Proteome Map CACYBPP1 Human Proteome Map
NCBI Gene CACYBPP1 ENTREZGENE