Gm10364 (predicted pseudogene 10364) - Rat Genome Database

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Gene: Gm10364 (predicted pseudogene 10364) Mus musculus
Analyze
Symbol: Gm10364
Name: predicted pseudogene 10364 (Ensembl:glyceraldehyde-3-phosphate dehydrogenase pseudogene)
RGD ID: 7204650
MGI Page MGI
Description:
Type: pseudo (Ensembl: lncRNA)
RefSeq Status: VALIDATED
Previously known as: EG545052; ENSMUSG00000072492
Related Functional Gene: Gapdh  
Latest Assembly: GRCm39 - Mouse Genome Assembly GRCm39
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391455,275,919 - 55,280,433 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1455,279,229 - 55,280,229 (+)EnsemblGRCm39 Ensembl
GRCm39 Ensembl1455,275,919 - 55,280,436 (+)EnsemblGRCm39 Ensembl
GRCm381455,038,462 - 55,042,976 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1455,038,462 - 55,042,979 (+)EnsemblGRCm38mm10GRCm38
MGSCv371455,660,559 - 55,661,812 (+)NCBIGRCm37MGSCv37mm9NCBIm37
Celera1452,844,694 - 52,849,121 (+)NCBICelera
Cytogenetic Map14C3NCBI
cM Map1428.04NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


References
Additional References at PubMed
PMID:12477932   PMID:14610273   PMID:21677750  


Genomics

Variants

.
Variants in Gm10364
153 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:352
Count of miRNA genes:281
Interacting mature miRNAs:308
Transcripts:ENSMUST00000076633, ENSMUST00000153034
Prediction methods:Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCm39)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1357589Kdnw2_mkidney weight 2 (mouse)Not determined1420887473121269804Mouse
1357527Epfpq1_mepididymal fat percentage QTL 1 (mouse)Not determined142106245071885801Mouse
14746973Manh76_mmandible shape 76 (mouse)142228721756287217Mouse
4142485Modor2_mmodifier of ocular retardation 2 (mouse)Not determined142492624858179769Mouse
13506929Recrq10_mrecombination rate in male meiosis QTL 10 (mouse)142792195761137449Mouse
10043886Cia49_mcollagen induced arthritis QTL 49 (mouse)Not determined142999699463997133Mouse
27226774Tibl15_mtibia length 15, 10 week (mouse)143032195787937436Mouse
1300909Ath13_matherosclerosis 13 (mouse)Not determined143033525064335381Mouse
1300998Cia17_mcollagen induced arthritis 17 (mouse)Not determined143033525064335381Mouse
27226737Metcl12_mmetatarsal-calcaneal length 12, 10 week (mouse)143322195759437449Mouse
1300625Cosz2_mcocaine seizure 2 (mouse)Not determined143504579768785736Mouse
10043887Cia50_mcollagen induced arthritis QTL 50 (mouse)Not determined143743018571430320Mouse
4142419Tgq26_mtriglyceride QTL 26 (mouse)Not determined4033731974337319Mouse
1301777Bglq15_mbody growth late QTL 15 (mouse)Not determined144296241676962593Mouse
1301424Skull21_mskull morphology 21 (mouse)Not determined144296241676962593Mouse
1300805Mors3_mmodifier of obesity related sterility 3 (mouse)Not determined144303727077037418Mouse
1301091Bbaa21_mB.burgdorferi-associated arthritis 21 (mouse)Not determined144306584777066045Mouse
4141400Nilac8_mnicotine induced locomotor activity 8 (mouse)Not determined144306584777066045Mouse
4141484Hcbip1_mhexachlorobenzene induced porphyria 1 (mouse)Not determined4733525059962593Mouse
1300605El5_mepilepsy 5 (mouse)Not determined144945542583455556Mouse
4142364Pbwg18_mpostnatal body weight growth 18 (mouse)Not determined145228198486282125Mouse
1301489Lbm10_mlean body mass 10 (mouse)Not determined145376129687761529Mouse
12880432Fgf23lq3_mFGF23 serum level QTL 3 (mouse)145393744087937440Mouse

Markers in Region
Gapdh  
Mouse AssemblyChrPosition (strand)SourceJBrowse
Cytogenetic Map11A3.3UniSTS
Cytogenetic Map9A5.3UniSTS
Cytogenetic Map14C1UniSTS
Cytogenetic Map14C2UniSTS
Cytogenetic Map1H4UniSTS
Cytogenetic Map6F2UniSTS
Cytogenetic Map9F2UniSTS
Gapdh  
Mouse AssemblyChrPosition (strand)SourceJBrowse
Cytogenetic Map14C1UniSTS
Cytogenetic Map14C2UniSTS
Cytogenetic Map6F2UniSTS
Cytogenetic Map11A3.3UniSTS
Cytogenetic Map1H4UniSTS
cM Map656.0UniSTS


Expression


Sequence


Reference Sequences
RefSeq Acc Id: ENSMUST00000076633
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1455,275,919 - 55,280,436 (+)Ensembl
GRCm38.p6 Ensembl1455,038,462 - 55,042,979 (+)Ensembl
RefSeq Acc Id: ENSMUST00000153034
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1455,279,229 - 55,280,229 (+)Ensembl
GRCm38.p6 Ensembl1455,041,772 - 55,042,772 (+)Ensembl
RefSeq Acc Id: NR_073535
RefSeq Status: VALIDATED
Type: NON-CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391455,275,919 - 55,280,433 (+)NCBI
GRCm381455,038,462 - 55,042,976 (+)NCBI
Celera1452,844,694 - 52,849,121 (+)NCBI
Sequence:
Protein Sequences
GenBank Protein AAH99969 (Get FASTA)   NCBI Sequence Viewer  
Reference Protein Sequences
Protein Domains
Glyceraldehyde 3-phosphate dehydrogenase NAD(P)


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSMUSG00000072492 Ensembl
  ENSMUSG00000121847 Ensembl, ENTREZGENE
Ensembl Transcript ENSMUST00000076633 ENTREZGENE
Gene3D-CATH NAD(P)-binding Rossmann-like Domain UniProtKB/TrEMBL
InterPro GlycerAld/Erythrose_P_DH UniProtKB/TrEMBL
  GlycerAld_3-P_DH_NAD(P)-bd UniProtKB/TrEMBL
  NAD(P)-bd_dom_sf UniProtKB/TrEMBL
MGD MGI:3643153 ENTREZGENE
NCBI Gene Gm10364 ENTREZGENE
PANTHER GLYCERALDEHYDE-3-PHOSPHATE DEHYDROGENASE UniProtKB/TrEMBL
  PTHR10836 UniProtKB/TrEMBL
Pfam Gp_dh_N UniProtKB/TrEMBL
PhenoGen Gm10364 PhenoGen
SMART Gp_dh_N UniProtKB/TrEMBL
Superfamily-SCOP SSF51735 UniProtKB/TrEMBL
UniProt Q499D1_MOUSE UniProtKB/TrEMBL