DPPA2P3 (developmental pluripotency associated 2 pseudogene 3) - Rat Genome Database

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Gene: DPPA2P3 (developmental pluripotency associated 2 pseudogene 3) Homo sapiens
Analyze
Symbol: DPPA2P3
Name: developmental pluripotency associated 2 pseudogene 3
RGD ID: 7175915
HGNC Page HGNC:44628
Description: INTERACTS WITH aflatoxin B1
Type: pseudo (Ensembl: processed_pseudogene)
RefSeq Status: VALIDATED
Related Functional Gene: DPPA2  
Latest Assembly: GRCh38 - Human Genome Assembly GRCh38
Position:
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh383193,993,093 - 193,994,238 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl3193,993,331 - 193,993,985 (-)EnsemblGRCh38hg38GRCh38
GRCh373193,710,882 - 193,712,027 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 363195,193,443 - 195,194,703 (-)NCBINCBI36Build 36hg18NCBI36
Celera3192,126,813 - 192,127,959 (-)NCBICelera
Cytogenetic Map3q29NCBI
HuRef3191,098,471 - 191,099,617 (-)NCBIHuRef
CHM1_13193,673,763 - 193,674,909 (-)NCBICHM1_1
T2T-CHM13v2.03196,689,752 - 196,690,898 (-)NCBIT2T-CHM13v2.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
aflatoxin B1  (EXP)

References
Additional References at PubMed
PMID:10737800  


Genomics

miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:80
Count of miRNA genes:80
Interacting mature miRNAs:80
Transcripts:ENST00000411853
Prediction methods:Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.

Markers in Region
D3S3562  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh373193,700,998 - 193,701,219UniSTSGRCh37
GRCh37236,136,237 - 36,136,490UniSTSGRCh37
Build 36235,989,741 - 35,989,994RGDNCBI36
Celera3192,116,928 - 192,117,149UniSTS
Celera235,974,233 - 35,974,486RGD
Cytogenetic Map3q29UniSTS
HuRef235,871,714 - 35,871,967UniSTS
HuRef3191,088,581 - 191,088,810UniSTS
Marshfield Genetic Map3217.24UniSTS
Marshfield Genetic Map3217.24RGD
Genethon Genetic Map3222.7UniSTS
deCODE Assembly Map3211.89UniSTS
Whitehead-YAC Contig Map3 UniSTS
G64903  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh373193,720,242 - 193,720,441UniSTSGRCh37
Build 363195,202,936 - 195,203,135RGDNCBI36
Celera3192,136,164 - 192,136,363RGD
Cytogenetic Map3q29UniSTS
HuRef3191,107,823 - 191,108,022UniSTS


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system sensory system adipose tissue appendage entire extraembryonic component
High
Medium
Low 2 1 14 2 3 2 6 4 3 4 16 28 4
Below cutoff 385 133 403 143 125 99 441 191 315 48 281 538 49 125 258 1

Sequence


Reference Sequences
RefSeq Acc Id: ENST00000411853
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl3193,993,331 - 193,993,985 (-)Ensembl
RefSeq Acc Id: NR_027764
RefSeq Status: VALIDATED
Type: NON-CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh383193,993,093 - 193,994,238 (-)NCBI
GRCh373193,710,882 - 193,712,027 (-)NCBI
HuRef3191,098,471 - 191,099,617 (-)NCBI
CHM1_13193,673,763 - 193,674,909 (-)NCBI
T2T-CHM13v2.03196,689,752 - 196,690,898 (-)NCBI
Sequence:

Additional Information

Database Acc Id Source(s)
COSMIC DPPA2P3 COSMIC
Ensembl Genes ENSG00000224403 Ensembl
GTEx ENSG00000224403 GTEx
HGNC ID HGNC:44628 ENTREZGENE
Human Proteome Map DPPA2P3 Human Proteome Map
NCBI Gene DPPA2P3 ENTREZGENE