RPEP2 (ribulose-5-phosphate-3-epimerase pseudogene 2) - Rat Genome Database

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Gene: RPEP2 (ribulose-5-phosphate-3-epimerase pseudogene 2) Homo sapiens
Analyze
Symbol: RPEP2
Name: ribulose-5-phosphate-3-epimerase pseudogene 2
RGD ID: 7174947
HGNC Page HGNC:44521
Description:
Type: pseudo (Ensembl: processed_pseudogene)
RefSeq Status: INFERRED
Related Functional Gene: RPE  
Latest Assembly: GRCh38 - Human Genome Assembly GRCh38
Position:
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38326,015,669 - 26,016,379 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl326,015,669 - 26,016,369 (+)EnsemblGRCh38hg38GRCh38
GRCh37326,057,160 - 26,057,870 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 36326,032,164 - 26,032,868 (+)NCBINCBI36Build 36hg18NCBI36
Celera325,994,044 - 25,994,754 (+)NCBICelera
Cytogenetic Map3p24.2NCBI
HuRef326,002,096 - 26,002,806 (+)NCBIHuRef
CHM1_1326,007,045 - 26,007,755 (+)NCBICHM1_1
T2T-CHM13v2.0326,018,394 - 26,019,104 (+)NCBIT2T-CHM13v2.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


References

Genomics

miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:236
Count of miRNA genes:195
Interacting mature miRNAs:199
Transcripts:ENST00000432149
Prediction methods:Microtar, Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.

Markers in Region
D3S3034  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh37326,152,894 - 26,153,039UniSTSGRCh37
Build 36326,127,898 - 26,128,043RGDNCBI36
Celera326,089,660 - 26,089,809RGD
Cytogenetic Map3p24.2UniSTS
HuRef326,097,816 - 26,097,965UniSTS
SHGC-14318  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh37326,186,428 - 26,186,525UniSTSGRCh37
Build 36326,161,432 - 26,161,529RGDNCBI36
Celera326,123,188 - 26,123,285RGD
Cytogenetic Map3p24.2UniSTS
HuRef326,131,346 - 26,131,443UniSTS
TNG Radiation Hybrid Map316930.0UniSTS


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system sensory system adipose tissue appendage
High
Medium
Low 1 1
Below cutoff 18 18 10 2 25 1 20 15 18 3 123 10 1 3 16

Sequence


Reference Sequences
RefSeq Acc Id: ENST00000432149
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl326,015,669 - 26,016,369 (+)Ensembl

Additional Information

Database Acc Id Source(s)
COSMIC RPEP2 COSMIC
Ensembl Genes ENSG00000234158 Ensembl, ENTREZGENE
GTEx ENSG00000234158 GTEx
HGNC ID HGNC:44521 ENTREZGENE
Human Proteome Map RPEP2 Human Proteome Map
NCBI Gene RPEP2 ENTREZGENE