ITGB2-AS1 (ITGB2 antisense RNA 1) - Rat Genome Database

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Gene: ITGB2-AS1 (ITGB2 antisense RNA 1) Homo sapiens
Analyze
Symbol: ITGB2-AS1
Name: ITGB2 antisense RNA 1
RGD ID: 6893126
HGNC Page HGNC:44304
Description: ASSOCIATED WITH Autism; autistic disorder; leukocyte adhesion deficiency 1; INTERACTS WITH antirheumatic drug; aristolochic acid A; benzo[a]pyrene
Type: ncrna (Ensembl: lncRNA)
RefSeq Status: VALIDATED
Previously known as: AL844908.5
Allele / Splice: See ClinVar data
Latest Assembly: GRCh38 - Human Genome Assembly GRCh38
Position:
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh382144,921,035 - 44,929,680 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl2144,921,051 - 44,929,680 (+)EnsemblGRCh38hg38GRCh38
GRCh372146,340,950 - 46,349,595 (+)NCBIGRCh37GRCh37hg19GRCh37
Cytogenetic Map21q22.3NCBI
HuRef2131,713,559 - 31,722,309 (+)NCBIHuRef
CHM1_12145,901,549 - 45,910,185 (+)NCBICHM1_1
T2T-CHM13v2.02143,281,820 - 43,290,429 (+)NCBIT2T-CHM13v2.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
Phenotype Annotations     Click to see Annotation Detail View

Human Phenotype
Autism  (IAGP)
References

References - curated
# Reference Title Reference Citation
1. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:12477932   PMID:16344560   PMID:29941860   PMID:30260245   PMID:32165090   PMID:34170494   PMID:34627422   PMID:36634939   PMID:37370246  


Genomics

Variants

.
Variants in ITGB2-AS1
1 total Variants

Clinical Variants
Name Type Condition(s) Position(s) Clinical significance
GRCh38/hg38 21q22.3(chr21:43071168-46670405)x1 copy number loss See cases [RCV000133675] Chr21:43071168..46670405 [GRCh38]
Chr21:44491278..48090317 [GRCh37]
Chr21:43364347..46914745 [NCBI36]
Chr21:21q22.3		 pathogenic
GRCh38/hg38 21p11.2-q22.3(chr21:7749532-46653084)x3 copy number gain See cases [RCV000134727] Chr21:7749532..46653084 [GRCh38]
Chr21:15485038..48072996 [GRCh37]
Chr21:14406909..46897424 [NCBI36]
Chr21:21p11.2-q22.3		 pathogenic
GRCh38/hg38 21q11.2-22.3(chr21:7749532-46649831)x3 copy number gain See cases [RCV000134509] Chr21:7749532..46649831 [GRCh38]
Chr21:14577835..48069743 [GRCh37]
Chr21:13499706..46894171 [NCBI36]
Chr21:21q11.2-22.3		 pathogenic
GRCh38/hg38 21p11.2-q22.3(chr21:7749532-46670440)x3 copy number gain See cases [RCV000134119] Chr21:7749532..46670440 [GRCh38]
Chr21:15485038..48090352 [GRCh37]
Chr21:14406909..46914780 [NCBI36]
Chr21:21p11.2-q22.3		 pathogenic
GRCh38/hg38 21q22.11-22.3(chr21:7749532-46670346)x3 copy number gain See cases [RCV000135310] Chr21:7749532..46670346 [GRCh38]
Chr21:34111831..48090258 [GRCh37]
Chr21:33033702..46914686 [NCBI36]
Chr21:21q22.11-22.3		 pathogenic
GRCh38/hg38 21q22.12-22.3(chr21:36206067-46670405)x3 copy number gain See cases [RCV000134972] Chr21:36206067..46670405 [GRCh38]
Chr21:37578365..48090317 [GRCh37]
Chr21:36500235..46914745 [NCBI36]
Chr21:21q22.12-22.3		 pathogenic
GRCh38/hg38 21p11.2-q22.3(chr21:7749532-46664250)x3 copy number gain See cases [RCV000134836] Chr21:7749532..46664250 [GRCh38]
Chr21:15485038..48084162 [GRCh37]
Chr21:14406909..46908590 [NCBI36]
Chr21:21p11.2-q22.3		 pathogenic
GRCh38/hg38 21p11.2-q22.3(chr21:7749532-46670440)x3 copy number gain See cases [RCV000134842] Chr21:7749532..46670440 [GRCh38]
Chr21:15513244..48090352 [GRCh37]
Chr21:14435115..46914780 [NCBI36]
Chr21:21p11.2-q22.3		 pathogenic
GRCh38/hg38 21p11.2-q22.3(chr21:7749532-46660999)x3 copy number gain See cases [RCV000135448] Chr21:7749532..46660999 [GRCh38]
Chr21:15499847..48080911 [GRCh37]
Chr21:14421718..46905339 [NCBI36]
Chr21:21p11.2-q22.3		 pathogenic
GRCh38/hg38 21q22.13-22.3(chr21:36519173-46670405)x3 copy number gain See cases [RCV000136142] Chr21:36519173..46670405 [GRCh38]
Chr21:37891471..48090317 [GRCh37]
Chr21:36813341..46914745 [NCBI36]
Chr21:21q22.13-22.3		 pathogenic
GRCh38/hg38 21q22.12-22.3(chr21:34789953-46636538)x1 copy number loss See cases [RCV000136828] Chr21:34789953..46636538 [GRCh38]
Chr21:36162250..48056450 [GRCh37]
Chr21:35084120..46880878 [NCBI36]
Chr21:21q22.12-22.3		 pathogenic
GRCh38/hg38 21p11.2-q22.3(chr21:7749532-46671060)x3 copy number gain See cases [RCV000137255] Chr21:7749532..46671060 [GRCh38]
Chr21:35319225..48090972 [GRCh37]
Chr21:34241095..46915400 [NCBI36]
Chr21:21p11.2-q22.3		 pathogenic
GRCh38/hg38 21p11.2-q22.3(chr21:7749532-46671060)x3 copy number gain See cases [RCV000137337] Chr21:7749532..46671060 [GRCh38]
Chr21:10697897..48090972 [GRCh37]
Chr21:1..46915400 [NCBI36]
Chr21:21p11.2-q22.3		 pathogenic
GRCh38/hg38 21q22.3(chr21:41733640-46671060)x1 copy number loss See cases [RCV000137341] Chr21:41733640..46671060 [GRCh38]
Chr21:43153800..48090972 [GRCh37]
Chr21:42026869..46915400 [NCBI36]
Chr21:21q22.3		 pathogenic
GRCh38/hg38 21q22.13-22.3(chr21:37669628-46671060)x1 copy number loss See cases [RCV000138096] Chr21:37669628..46671060 [GRCh38]
Chr21:39041930..48090972 [GRCh37]
Chr21:37963800..46915400 [NCBI36]
Chr21:21q22.13-22.3		 pathogenic
GRCh38/hg38 21p11.2-q22.3(chr21:7749532-46671060)x3 copy number gain See cases [RCV000138216] Chr21:7749532..46671060 [GRCh38]
Chr21:10944001..48090972 [GRCh37]
Chr21:9965872..46915400 [NCBI36]
Chr21:21p11.2-q22.3		 pathogenic
GRCh38/hg38 21q22.12-22.3(chr21:36066991-46671060)x3 copy number gain See cases [RCV000138164] Chr21:36066991..46671060 [GRCh38]
Chr21:37439289..48090972 [GRCh37]
Chr21:36361159..46915400 [NCBI36]
Chr21:21q22.12-22.3		 pathogenic
GRCh38/hg38 21p11.2-q22.3(chr21:7749532-46671060)x3 copy number gain See cases [RCV000138436] Chr21:7749532..46671060 [GRCh38]
Chr21:15451032..48090972 [GRCh37]
Chr21:14372903..46915400 [NCBI36]
Chr21:21p11.2-q22.3		 pathogenic|conflicting data from submitters
GRCh38/hg38 21q22.3(chr21:44576109-45204790)x3 copy number gain See cases [RCV000138939] Chr21:44576109..45204790 [GRCh38]
Chr21:45995986..46624705 [GRCh37]
Chr21:44820414..45449133 [NCBI36]
Chr21:21q22.3		 uncertain significance
GRCh38/hg38 21q22.2-22.3(chr21:40296025-46670440)x1 copy number loss See cases [RCV000139158] Chr21:40296025..46670440 [GRCh38]
Chr21:41667952..48090352 [GRCh37]
Chr21:40589822..46914780 [NCBI36]
Chr21:21q22.2-22.3		 pathogenic
GRCh38/hg38 21q11.2-22.3(chr21:7749532-46670346)x3 copy number gain See cases [RCV000140103] Chr21:7749532..46670346 [GRCh38]
Chr21:14577894..48090258 [GRCh37]
Chr21:13499765..46914686 [NCBI36]
Chr21:21q11.2-22.3		 pathogenic
GRCh38/hg38 21q11.2-22.3(chr21:7749532-46698247)x3 copy number gain See cases [RCV000141346] Chr21:7749532..46698247 [GRCh38]
Chr21:14577835..48118159 [GRCh37]
Chr21:13499706..46942587 [NCBI36]
Chr21:21q11.2-22.3		 pathogenic
GRCh38/hg38 21q21.3-22.3(chr21:7749532-46677460)x3 copy number gain See cases [RCV000141827] Chr21:7749532..46677460 [GRCh38]
Chr21:28285299..48097372 [GRCh37]
Chr21:27207170..46921800 [NCBI36]
Chr21:21q21.3-22.3		 uncertain significance
GRCh38/hg38 21q22.2-22.3(chr21:38816399-46677460)x1 copy number loss See cases [RCV000142311] Chr21:38816399..46677460 [GRCh38]
Chr21:40188323..48097372 [GRCh37]
Chr21:39110193..46921800 [NCBI36]
Chr21:21q22.2-22.3		 pathogenic
GRCh38/hg38 21p11.2-q22.3(chr21:7817158-46670440)x1 copy number loss See cases [RCV000142427] Chr21:7817158..46670440 [GRCh38]
Chr21:15485038..48090352 [GRCh37]
Chr21:14406909..46914780 [NCBI36]
Chr21:21p11.2-q22.3		 pathogenic
GRCh38/hg38 21q22.3(chr21:44516679-45409275)x1 copy number loss See cases [RCV000142218] Chr21:44516679..45409275 [GRCh38]
Chr21:45936562..46829190 [GRCh37]
Chr21:44760990..45653618 [NCBI36]
Chr21:21q22.3		 uncertain significance
GRCh38/hg38 21q22.3(chr21:42913213-46670405)x1 copy number loss See cases [RCV000142600] Chr21:42913213..46670405 [GRCh38]
Chr21:44333323..48090317 [GRCh37]
Chr21:43206392..46914745 [NCBI36]
Chr21:21q22.3		 pathogenic
GRCh38/hg38 21q11.2-22.3(chr21:7749532-46677460)x3 copy number gain See cases [RCV000143376] Chr21:7749532..46677460 [GRCh38]
Chr21:15006458..48097372 [GRCh37]
Chr21:13928329..46921800 [NCBI36]
Chr21:21q11.2-22.3		 pathogenic
GRCh38/hg38 21q22.3(chr21:42129699-46671060)x1 copy number loss See cases [RCV000143335] Chr21:42129699..46671060 [GRCh38]
Chr21:43549809..48090972 [GRCh37]
Chr21:42422878..46915400 [NCBI36]
Chr21:21q22.3		 pathogenic
GRCh38/hg38 21q11.2-22.3(chr21:7749532-46677460) copy number gain See cases [RCV000143160] Chr21:7749532..46677460 [GRCh38]
Chr21:14386013..48097372 [GRCh37]
Chr21:13307884..46921800 [NCBI36]
Chr21:21q11.2-22.3		 pathogenic
GRCh38/hg38 21q11.2-22.3(chr21:7749532-46677460)x3 copy number gain See cases [RCV000143120] Chr21:7749532..46677460 [GRCh38]
Chr21:15006457..48097372 [GRCh37]
Chr21:13928328..46921800 [NCBI36]
Chr21:21q11.2-22.3		 pathogenic
GRCh38/hg38 21p11.2-q22.3(chr21:7749532-46670405)x3 copy number gain See cases [RCV000148131] Chr21:7749532..46670405 [GRCh38]
Chr21:15499847..48090317 [GRCh37]
Chr21:14421718..46914745 [NCBI36]
Chr21:21p11.2-q22.3		 pathogenic
GRCh38/hg38 21p11.2-q22.3(chr21:7749532-46670405)x3 copy number gain See cases [RCV000050445] Chr21:7749532..46670405 [GRCh38]
Chr21:15499847..48090317 [GRCh37]
Chr21:14421718..46914745 [NCBI36]
Chr21:21p11.2-q22.3		 pathogenic|conflicting interpretations of pathogenicity|conflicting data from submitters
GRCh38/hg38 21q22.3(chr21:41285201-46670405)x1 copy number loss See cases [RCV000051022] Chr21:41285201..46670405 [GRCh38]
Chr21:42657128..48090317 [GRCh37]
Chr21:41578998..46914745 [NCBI36]
Chr21:21q22.3		 pathogenic
GRCh38/hg38 21q22.3(chr21:42232926-46670405)x1 copy number loss See cases [RCV000050746] Chr21:42232926..46670405 [GRCh38]
Chr21:43653036..48090317 [GRCh37]
Chr21:42526105..46914745 [NCBI36]
Chr21:21q22.3		 pathogenic
GRCh38/hg38 21p11.2-q22.3(chr21:7749532-46670546)x3 copy number gain See cases [RCV000053045] Chr21:7749532..46670546 [GRCh38]
Chr21:15499647..48090458 [GRCh37]
Chr21:14421518..46914886 [NCBI36]
Chr21:21p11.2-q22.3		 pathogenic
GRCh38/hg38 21p11.2-q22.3(chr21:7749532-46661140)x3 copy number gain See cases [RCV000053065] Chr21:7749532..46661140 [GRCh38]
Chr21:15499647..48081052 [GRCh37]
Chr21:14421518..46905480 [NCBI36]
Chr21:21p11.2-q22.3		 pathogenic
GRCh38/hg38 21p11.2-q22.3(chr21:7749532-46670405)x3 copy number gain See cases [RCV000053068] Chr21:7749532..46670405 [GRCh38]
Chr21:20655360..48090317 [GRCh37]
Chr21:19577231..46914745 [NCBI36]
Chr21:21p11.2-q22.3		 pathogenic
GRCh38/hg38 21p11.2-q22.3(chr21:7749532-46661140)x3 copy number gain See cases [RCV000053067] Chr21:7749532..46661140 [GRCh38]
Chr21:15499847..48081052 [GRCh37]
Chr21:14421718..46905480 [NCBI36]
Chr21:21p11.2-q22.3		 pathogenic
GRCh38/hg38 21p11.2-q22.3(chr21:7749532-46670405)x3 copy number gain See cases [RCV000053069] Chr21:7749532..46670405 [GRCh38]
Chr21:34423268..48090317 [GRCh37]
Chr21:33345138..46914745 [NCBI36]
Chr21:21p11.2-q22.3		 pathogenic
GRCh38/hg38 21q22.12-22.3(chr21:35027972-46670405)x1 copy number loss Developmental Delay and additional significant developmental and morphological phenotypes referred for genetic testing [RCV000052836]|Developmental delay and additional significant developmental and morphological phenotypes referred for genetic testing [RCV000052836]|See cases [RCV000052836] Chr21:35027972..46670405 [GRCh38]
Chr21:36400269..48090317 [GRCh37]
Chr21:35322139..46914745 [NCBI36]
Chr21:21q22.12-22.3		 pathogenic
GRCh38/hg38 21q22.13-22.3(chr21:38273492-46670405)x1 copy number loss Developmental Delay and additional significant developmental and morphological phenotypes referred for genetic testing [RCV000052838]|Developmental delay and additional significant developmental and morphological phenotypes referred for genetic testing [RCV000052838]|See cases [RCV000052838] Chr21:38273492..46670405 [GRCh38]
Chr21:39645414..48090317 [GRCh37]
Chr21:38567284..46914745 [NCBI36]
Chr21:21q22.13-22.3		 pathogenic
GRCh38/hg38 21q22.2-22.3(chr21:40127825-46670546)x1 copy number loss See cases [RCV000052839] Chr21:40127825..46670546 [GRCh38]
Chr21:41499752..48090458 [GRCh37]
Chr21:40421622..46914886 [NCBI36]
Chr21:21q22.2-22.3		 pathogenic
GRCh38/hg38 21p11.2-q22.3(chr21:7749532-46623792)x3 copy number gain See cases [RCV000053039] Chr21:7749532..46623792 [GRCh38]
Chr21:14524963..48043704 [GRCh37]
Chr21:13446834..46868132 [NCBI36]
Chr21:21p11.2-q22.3		 pathogenic
GRCh38/hg38 21p11.2-q22.3(chr21:7749532-46653090)x3 copy number gain See cases [RCV000053040] Chr21:7749532..46653090 [GRCh38]
Chr21:14539679..48073002 [GRCh37]
Chr21:13461550..46897430 [NCBI36]
Chr21:21p11.2-q22.3		 pathogenic
GRCh38/hg38 21p11.2-q22.3(chr21:7749532-46623792)x3 copy number gain See cases [RCV000053042] Chr21:7749532..46623792 [GRCh38]
Chr21:14595524..48043704 [GRCh37]
Chr21:13517395..46868132 [NCBI36]
Chr21:21p11.2-q22.3		 pathogenic
GRCh38/hg38 21p11.2-q22.3(chr21:7749532-46623792)x3 copy number gain See cases [RCV000053043] Chr21:7749532..46623792 [GRCh38]
Chr21:14629063..48043704 [GRCh37]
Chr21:13550934..46868132 [NCBI36]
Chr21:21p11.2-q22.3		 pathogenic
Single allele duplication Autism [RCV000754229] Chr21:43403441..46673937 [GRCh38]
Chr21:21q22.3		 likely pathogenic
NM_000211.4(ITGB2):c.-228G>A single nucleotide variant Leukocyte adhesion deficiency 1 [RCV001136842] Chr21:44921045 [GRCh38]
Chr21:46340960 [GRCh37]
Chr21:21q22.3		 uncertain significance
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:2340
Count of miRNA genes:691
Interacting mature miRNAs:813
Transcripts:ENST00000429132, ENST00000441379, ENST00000608043, ENST00000609592, ENST00000609694, ENST00000610063
Prediction methods:Microtar, Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.

Markers in Region
SHGC-32286  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh372146,349,587 - 46,349,714UniSTSGRCh37
Build 362145,174,015 - 45,174,142RGDNCBI36
Celera2131,456,090 - 31,456,217RGD
Cytogenetic Map21q22.3UniSTS
HuRef2131,722,307 - 31,722,434UniSTS
Whitehead-RH Map21238.0UniSTS
GeneMap99-G3 RH Map211594.0UniSTS
SHGC-132463  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh372146,349,611 - 46,349,857UniSTSGRCh37
Build 362145,174,039 - 45,174,285RGDNCBI36
Celera2131,456,114 - 31,456,360RGD
Cytogenetic Map21q22.3UniSTS
HuRef2131,722,331 - 31,722,576UniSTS
TNG Radiation Hybrid Map2119176.0UniSTS
SHGC-87704  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh372146,349,392 - 46,349,537UniSTSGRCh37
Build 362145,173,820 - 45,173,965RGDNCBI36
Celera2131,455,895 - 31,456,040RGD
Cytogenetic Map21q22.3UniSTS
HuRef2131,722,112 - 31,722,257UniSTS
TNG Radiation Hybrid Map2119180.0UniSTS
GeneMap99-GB4 RH Map21245.47UniSTS
NCBI RH Map21407.7UniSTS


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system sensory system visual system adipose tissue appendage entire extraembryonic component pharyngeal arch
High
Medium 101 815 75 23 1588 12 129 28 142 25 110 435 12 78 111
Low 2053 1786 1510 544 269 400 3207 1243 2889 280 1072 996 154 1109 1929 1 1
Below cutoff 241 383 129 48 53 44 929 917 650 97 247 103 6 1 17 746 2

Sequence

Nucleotide Sequences
RefSeq Transcripts NG_007270 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NR_038311 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NR_038312 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NR_038313 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NR_038314 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NR_038315 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NR_038316 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AL844907 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AL844908 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC023625 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC040064 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC051807 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC062315 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BU146543 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CP068257 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  DA378472 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  DA942354 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  DA944688 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  DA948979 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  DB115909 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Reference Sequences
RefSeq Acc Id: ENST00000429132
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl2144,921,326 - 44,928,028 (+)Ensembl
RefSeq Acc Id: ENST00000441379
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl2144,921,051 - 44,929,678 (+)Ensembl
RefSeq Acc Id: ENST00000608043
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl2144,921,076 - 44,927,944 (+)Ensembl
RefSeq Acc Id: ENST00000609592
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl2144,921,073 - 44,927,970 (+)Ensembl
RefSeq Acc Id: ENST00000609694
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl2144,921,073 - 44,927,902 (+)Ensembl
RefSeq Acc Id: ENST00000610063
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl2144,921,076 - 44,927,942 (+)Ensembl
RefSeq Acc Id: ENST00000688119
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl2144,927,787 - 44,929,680 (+)Ensembl
RefSeq Acc Id: ENST00000688945
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl2144,927,623 - 44,929,678 (+)Ensembl
RefSeq Acc Id: ENST00000692198
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl2144,927,787 - 44,929,680 (+)Ensembl
RefSeq Acc Id: NR_038311
RefSeq Status: VALIDATED
Type: NON-CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh382144,921,035 - 44,929,680 (+)NCBI
GRCh372146,340,950 - 46,349,595 (+)NCBI
HuRef2131,713,559 - 31,722,309 (+)NCBI
CHM1_12145,901,549 - 45,910,185 (+)NCBI
T2T-CHM13v2.02143,281,820 - 43,290,429 (+)NCBI
Sequence:
RefSeq Acc Id: NR_038312
RefSeq Status: VALIDATED
Type: NON-CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh382144,921,035 - 44,929,680 (+)NCBI
GRCh372146,340,950 - 46,349,595 (+)NCBI
HuRef2131,713,559 - 31,722,309 (+)NCBI
CHM1_12145,901,549 - 45,910,185 (+)NCBI
T2T-CHM13v2.02143,281,820 - 43,290,429 (+)NCBI
Sequence:
RefSeq Acc Id: NR_038313
RefSeq Status: VALIDATED
Type: NON-CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh382144,921,035 - 44,929,680 (+)NCBI
GRCh372146,340,950 - 46,349,595 (+)NCBI
HuRef2131,713,559 - 31,722,309 (+)NCBI
CHM1_12145,901,549 - 45,910,185 (+)NCBI
T2T-CHM13v2.02143,281,820 - 43,290,429 (+)NCBI
Sequence:
RefSeq Acc Id: NR_038314
RefSeq Status: VALIDATED
Type: NON-CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh382144,921,035 - 44,929,680 (+)NCBI
GRCh372146,340,950 - 46,349,595 (+)NCBI
HuRef2131,713,559 - 31,722,309 (+)NCBI
CHM1_12145,901,549 - 45,910,185 (+)NCBI
T2T-CHM13v2.02143,281,820 - 43,290,429 (+)NCBI
Sequence:
RefSeq Acc Id: NR_038315
RefSeq Status: VALIDATED
Type: NON-CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh382144,921,035 - 44,929,680 (+)NCBI
GRCh372146,340,950 - 46,349,595 (+)NCBI
HuRef2131,713,559 - 31,722,309 (+)NCBI
CHM1_12145,901,549 - 45,910,185 (+)NCBI
T2T-CHM13v2.02143,281,820 - 43,290,429 (+)NCBI
Sequence:
RefSeq Acc Id: NR_038316
RefSeq Status: VALIDATED
Type: NON-CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh382144,921,035 - 44,929,680 (+)NCBI
GRCh372146,340,950 - 46,349,595 (+)NCBI
HuRef2131,713,559 - 31,722,309 (+)NCBI
CHM1_12145,901,549 - 45,910,185 (+)NCBI
T2T-CHM13v2.02143,281,820 - 43,290,429 (+)NCBI
Sequence:
Promoters
RGD ID:15097366
Promoter ID:EPDNEWNC_H2207
Type:initiation region
Name:ITGB2-AS1_1
Description:ITGB2 antisense RNA 1 [Source:HGNC Symbol;Acc:HGNC:44304]
SO ACC ID:SO:0000170
Source:EPDNEWNC (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.; Paired-end sequencing.
Position:
Human AssemblyChrPosition (strand)Source
GRCh382144,921,033 - 44,921,093EPDNEWNC

Additional Information

Database Acc Id Source(s)
COSMIC ITGB2-AS1 COSMIC
Ensembl Genes ENSG00000227039 Ensembl, ENTREZGENE
Ensembl Transcript ENST00000441379 ENTREZGENE
GTEx ENSG00000227039 GTEx
HGNC ID HGNC:44304 ENTREZGENE
Human Proteome Map ITGB2-AS1 Human Proteome Map
NCBI Gene ITGB2-AS1 ENTREZGENE
RNAcentral URS000075A18C RNACentral
  URS000075A5F9 RNACentral
  URS000075B9D2 RNACentral
  URS000075C361 RNACentral
  URS000075D6A7 RNACentral
  URS000075E453 RNACentral