PEBP1P3 (phosphatidylethanolamine binding protein 1 pseudogene 3) - Rat Genome Database

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Gene: PEBP1P3 (phosphatidylethanolamine binding protein 1 pseudogene 3) Homo sapiens
Analyze
Symbol: PEBP1P3
Name: phosphatidylethanolamine binding protein 1 pseudogene 3
RGD ID: 6892980
HGNC Page HGNC:44345
Description:
Type: pseudo (Ensembl: processed_pseudogene)
RefSeq Status: INFERRED
Related Functional Gene: PEBP1  
Latest Assembly: GRCh38 - Human Genome Assembly GRCh38
Position:
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381198,678,338 - 198,680,125 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1198,679,139 - 198,680,033 (-)EnsemblGRCh38hg38GRCh38
GRCh371198,647,467 - 198,649,254 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 361196,914,886 - 196,951,914 (-)NCBINCBI36Build 36hg18NCBI36
Celera1171,770,587 - 171,771,685 (-)NCBICelera
Cytogenetic Map1q31.3NCBI
HuRef1169,814,696 - 169,816,496 (-)NCBIHuRef
CHM1_11200,069,768 - 200,071,566 (-)NCBICHM1_1
T2T-CHM13v2.01197,938,252 - 197,940,038 (-)NCBIT2T-CHM13v2.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


References
Additional References at PubMed
PMID:34067766  


Genomics

miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:286
Count of miRNA genes:245
Interacting mature miRNAs:261
Transcripts:ENST00000455475
Prediction methods:Microtar, Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.

Markers in Region
GDB:451706  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh3712118,582,594 - 118,582,678UniSTSGRCh37
GRCh371198,648,194 - 198,648,277UniSTSGRCh37
Build 361196,914,817 - 196,914,900RGDNCBI36
Celera12118,213,675 - 118,213,759UniSTS
Celera1171,770,723 - 171,770,806RGD
Cytogenetic Map1q31.3UniSTS
Cytogenetic Map14q32.2UniSTS
Cytogenetic Map12q24.23UniSTS
HuRef12115,592,557 - 115,592,641UniSTS
HuRef1169,815,423 - 169,815,506UniSTS
HuRef1477,074,965 - 77,075,049UniSTS
PMC116441P1  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh371198,665,802 - 198,666,061UniSTSGRCh37
Build 361196,932,425 - 196,932,684RGDNCBI36
Celera1171,788,330 - 171,788,589RGD
Cytogenetic Map1q31.3UniSTS
Cytogenetic Map1q31-q32UniSTS
HuRef1169,833,029 - 169,833,288UniSTS
AL010096  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh371198,650,884 - 198,651,037UniSTSGRCh37
Build 361196,917,507 - 196,917,660RGDNCBI36
Celera1171,773,413 - 171,773,566RGD
Cytogenetic Map1q31.3UniSTS
Cytogenetic Map1q31-q32UniSTS
HuRef1169,818,112 - 169,818,265UniSTS


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system sensory system adipose tissue appendage
High
Medium 16
Low 72 481 63 11 966 10 43 6 21 9 360 266 1 105 27
Below cutoff 691 807 551 210 592 134 976 323 768 96 326 591 75 549 532

Sequence


Reference Sequences
RefSeq Acc Id: ENST00000455475
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1198,679,139 - 198,680,033 (-)Ensembl

Additional Information

Database Acc Id Source(s)
COSMIC PEBP1P3 COSMIC
Ensembl Genes ENSG00000236278 Ensembl
GTEx ENSG00000236278 GTEx
HGNC ID HGNC:44345 ENTREZGENE
Human Proteome Map PEBP1P3 Human Proteome Map
NCBI Gene PEBP1P3 ENTREZGENE