RNA5SP66 (RNA, 5S ribosomal pseudogene 66) - Rat Genome Database

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Gene: RNA5SP66 (RNA, 5S ribosomal pseudogene 66) Homo sapiens
Analyze
Symbol: RNA5SP66
Name: RNA, 5S ribosomal pseudogene 66
RGD ID: 6481986
HGNC Page HGNC:42843
Description:
Type: pseudo (Ensembl: rRNA_pseudogene)
RefSeq Status: INFERRED
Previously known as: RN5S66
Latest Assembly: GRCh38 - Human Genome Assembly GRCh38
Position:
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381169,067,264 - 169,067,364 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1169,067,264 - 169,067,364 (+)EnsemblGRCh38hg38GRCh38
GRCh371169,036,502 - 169,036,602 (+)NCBIGRCh37GRCh37hg19GRCh37
Cytogenetic Map1q24.2NCBI
HuRef1140,282,437 - 140,282,537 (+)NCBIHuRef
CHM1_11170,458,603 - 170,458,703 (+)NCBICHM1_1
T2T-CHM13v2.01168,422,381 - 168,422,481 (+)NCBIT2T-CHM13v2.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


References

Genomics

miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:54
Count of miRNA genes:53
Interacting mature miRNAs:54
Transcripts:ENST00000517178
Prediction methods:Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system sensory system adipose tissue appendage
High
Medium
Low 5 2 3 3 4 3 1 17 8 7
Below cutoff 7 5 5 2 1 1 12 5 7 15 10 1 4 8

Sequence


Reference Sequences
RefSeq Acc Id: ENST00000517178
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1169,067,264 - 169,067,364 (+)Ensembl

Additional Information

Database Acc Id Source(s)
COSMIC RNA5SP66 COSMIC
Ensembl Genes ENSG00000252987 Ensembl, ENTREZGENE
GTEx ENSG00000252987 GTEx
HGNC ID HGNC:42843 ENTREZGENE
Human Proteome Map RNA5SP66 Human Proteome Map
NCBI Gene RN5S66 ENTREZGENE


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2012-08-14 RNA5SP66  RNA, 5S ribosomal pseudogene 66  RN5S66  RNA, 5S ribosomal 66  Symbol and/or name change 5135510 APPROVED