RNA5SP123 (RNA, 5S ribosomal pseudogene 123) - Rat Genome Database

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Gene: RNA5SP123 (RNA, 5S ribosomal pseudogene 123) Homo sapiens
Analyze
Symbol: RNA5SP123
Name: RNA, 5S ribosomal pseudogene 123
RGD ID: 6481962
HGNC Page HGNC:43023
Description:
Type: pseudo (Ensembl: rRNA_pseudogene)
RefSeq Status: INFERRED
Previously known as: RN5S123
Latest Assembly: GRCh38 - Human Genome Assembly GRCh38
Position:
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38312,511,095 - 12,511,213 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl312,511,095 - 12,511,213 (-)EnsemblGRCh38hg38GRCh38
GRCh37312,552,594 - 12,552,712 (-)NCBIGRCh37GRCh37hg19GRCh37
Cytogenetic Map3p25.2NCBI
HuRef312,485,658 - 12,485,776 (-)NCBIHuRef
CHM1_1312,502,679 - 12,502,797 (-)NCBICHM1_1
T2T-CHM13v2.0312,508,903 - 12,509,021 (-)NCBIT2T-CHM13v2.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


References

Genomics

miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:133
Count of miRNA genes:130
Interacting mature miRNAs:131
Transcripts:ENST00000363244
Prediction methods:Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system sensory system adipose tissue appendage entire extraembryonic component
High
Medium 3 5 1 1 3
Low 256 132 275 84 270 64 788 99 443 103 298 356 28 177 440
Below cutoff 424 307 291 72 101 34 784 287 555 51 269 227 39 281 474 1

Sequence


Reference Sequences
RefSeq Acc Id: ENST00000363244
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl312,511,095 - 12,511,213 (-)Ensembl

Additional Information

Database Acc Id Source(s)
COSMIC RNA5SP123 COSMIC
Ensembl Genes ENSG00000200114 Ensembl, ENTREZGENE
GTEx ENSG00000200114 GTEx
HGNC ID HGNC:43023 ENTREZGENE
Human Proteome Map RNA5SP123 Human Proteome Map
NCBI Gene RN5S123 ENTREZGENE


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2012-08-14 RNA5SP123  RNA, 5S ribosomal pseudogene 123  RN5S123  RNA, 5S ribosomal 123  Symbol and/or name change 5135510 APPROVED