RNA5SP121 (RNA, 5S ribosomal pseudogene 121) - Rat Genome Database

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Gene: RNA5SP121 (RNA, 5S ribosomal pseudogene 121) Homo sapiens
Analyze
Symbol: RNA5SP121
Name: RNA, 5S ribosomal pseudogene 121
RGD ID: 6481958
HGNC Page HGNC:42919
Description:
Type: pseudo (Ensembl: rRNA_pseudogene)
RefSeq Status: INFERRED
Previously known as: RN5S121
Latest Assembly: GRCh38 - Human Genome Assembly GRCh38
Position:
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh382227,763,052 - 227,763,152 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl2227,763,052 - 227,763,152 (-)EnsemblGRCh38hg38GRCh38
GRCh372228,627,768 - 228,627,868 (-)NCBIGRCh37GRCh37hg19GRCh37
Cytogenetic Map2q36.3NCBI
HuRef2220,470,383 - 220,470,483 (-)NCBIHuRef
CHM1_12228,634,023 - 228,634,123 (-)NCBICHM1_1
T2T-CHM13v2.02228,245,618 - 228,245,718 (-)NCBIT2T-CHM13v2.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


References

Genomics

miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:238
Count of miRNA genes:226
Interacting mature miRNAs:238
Transcripts:ENST00000516537
Prediction methods:Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system adipose tissue appendage
High
Medium
Low 8 3 3 13 3 1 2 6 9 5 1
Below cutoff 7 3 6 1 6 1 5 2 4 3 9 4 2 1

Sequence


Reference Sequences
RefSeq Acc Id: ENST00000516537
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl2227,763,052 - 227,763,152 (-)Ensembl

Additional Information

Database Acc Id Source(s)
COSMIC RNA5SP121 COSMIC
Ensembl Genes ENSG00000252346 Ensembl, ENTREZGENE
GTEx ENSG00000252346 GTEx
HGNC ID HGNC:42919 ENTREZGENE
Human Proteome Map RNA5SP121 Human Proteome Map
NCBI Gene RN5S121 ENTREZGENE


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2012-08-14 RNA5SP121  RNA, 5S ribosomal pseudogene 121  RN5S121  RNA, 5S ribosomal 121  Symbol and/or name change 5135510 APPROVED