RNA5SP216 (RNA, 5S ribosomal pseudogene 216) - Rat Genome Database

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Gene: RNA5SP216 (RNA, 5S ribosomal pseudogene 216) Homo sapiens
Analyze
Symbol: RNA5SP216
Name: RNA, 5S ribosomal pseudogene 216
RGD ID: 6481839
HGNC Page HGNC:43116
Description:
Type: pseudo (Ensembl: rRNA_pseudogene)
RefSeq Status: INFERRED
Previously known as: RN5S216
Latest Assembly: GRCh38 - Human Genome Assembly GRCh38
Position:
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh386125,979,812 - 125,979,934 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl6125,979,812 - 125,979,934 (-)EnsemblGRCh38hg38GRCh38
GRCh376126,300,958 - 126,301,080 (-)NCBIGRCh37GRCh37hg19GRCh37
Cytogenetic Map6q22.32NCBI
HuRef6123,877,308 - 123,877,430 (-)NCBIHuRef
CHM1_16126,564,867 - 126,564,989 (-)NCBICHM1_1
T2T-CHM13v2.06127,168,435 - 127,168,557 (-)NCBIT2T-CHM13v2.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


References

Genomics

miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:147
Count of miRNA genes:141
Interacting mature miRNAs:146
Transcripts:ENST00000516111
Prediction methods:Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system
High
Medium
Low 14 4 4 4 13 4 1 1 1 4
Below cutoff 18 6 1 36 3 7 15 22 11 14 31

Sequence


Reference Sequences
RefSeq Acc Id: ENST00000516111
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl6125,979,812 - 125,979,934 (-)Ensembl

Additional Information

Database Acc Id Source(s)
COSMIC RNA5SP216 COSMIC
Ensembl Genes ENSG00000251920 Ensembl, ENTREZGENE
GTEx ENSG00000251920 GTEx
HGNC ID HGNC:43116 ENTREZGENE
Human Proteome Map RNA5SP216 Human Proteome Map
NCBI Gene RN5S216 ENTREZGENE


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2012-08-14 RNA5SP216  RNA, 5S ribosomal pseudogene 216  RN5S216  RNA, 5S ribosomal 216  Symbol and/or name change 5135510 APPROVED