RNA5SP341 (RNA, 5S ribosomal pseudogene 341) - Rat Genome Database

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Gene: RNA5SP341 (RNA, 5S ribosomal pseudogene 341) Homo sapiens
Analyze
Symbol: RNA5SP341
Name: RNA, 5S ribosomal pseudogene 341
RGD ID: 6481753
HGNC Page HGNC:43241
Description:
Type: pseudo (Ensembl: rRNA_pseudogene)
RefSeq Status: INFERRED
Previously known as: RN5S341
Latest Assembly: GRCh38 - Human Genome Assembly GRCh38
Position:
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381157,450,183 - 57,450,299 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1157,450,183 - 57,450,299 (+)EnsemblGRCh38hg38GRCh38
GRCh371157,217,656 - 57,217,772 (+)NCBIGRCh37GRCh37hg19GRCh37
Cytogenetic Map11q12.1NCBI
CHM1_11157,083,962 - 57,084,078 (+)NCBICHM1_1
T2T-CHM13v2.01157,400,394 - 57,400,510 (+)NCBIT2T-CHM13v2.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


References

Genomics

miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:143
Count of miRNA genes:138
Interacting mature miRNAs:140
Transcripts:ENST00000516261
Prediction methods:Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system sensory system adipose tissue appendage
High
Medium
Low 40 16 63 33 73 32 82 4 22 4 37 54 1 10 37
Below cutoff 103 48 75 33 35 28 189 41 38 7 50 66 5 48 100

Sequence


Reference Sequences
RefSeq Acc Id: ENST00000516261
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1157,450,183 - 57,450,299 (+)Ensembl

Additional Information

Database Acc Id Source(s)
COSMIC RNA5SP341 COSMIC
Ensembl Genes ENSG00000252070 Ensembl, ENTREZGENE
GTEx ENSG00000252070 GTEx
HGNC ID HGNC:43241 ENTREZGENE
Human Proteome Map RNA5SP341 Human Proteome Map
NCBI Gene RN5S341 ENTREZGENE


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2012-08-14 RNA5SP341  RNA, 5S ribosomal pseudogene 341  RN5S341  RNA, 5S ribosomal 341  Symbol and/or name change 5135510 APPROVED