RNA5SP382 (RNA, 5S ribosomal pseudogene 382) - Rat Genome Database

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Gene: RNA5SP382 (RNA, 5S ribosomal pseudogene 382) Homo sapiens
Analyze
Symbol: RNA5SP382
Name: RNA, 5S ribosomal pseudogene 382
RGD ID: 6481692
HGNC Page HGNC:43282
Description: INTERACTS WITH carbon nanotube
Type: pseudo (Ensembl: rRNA_pseudogene)
RefSeq Status: INFERRED
Previously known as: RN5S382
Latest Assembly: GRCh38 - Human Genome Assembly GRCh38
Position:
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381420,414,987 - 20,415,098 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1420,414,987 - 20,415,098 (+)EnsemblGRCh38hg38GRCh38
GRCh371420,883,146 - 20,883,257 (+)NCBIGRCh37GRCh37hg19GRCh37
Cytogenetic Map14q11.2NCBI
HuRef141,004,807 - 1,004,918 (+)NCBIHuRef
CHM1_11420,884,521 - 20,884,632 (+)NCBICHM1_1
T2T-CHM13v2.01414,611,896 - 14,612,007 (+)NCBIT2T-CHM13v2.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
References

Genomics

miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:34
Count of miRNA genes:33
Interacting mature miRNAs:33
Transcripts:ENST00000363355
Prediction methods:Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system sensory system adipose tissue appendage entire extraembryonic component
High
Medium
Low 64 41 69 6 70 3 117 26 82 32 81 116 3 14 76
Below cutoff 174 146 141 20 99 10 296 161 255 45 123 158 15 85 207 1

Sequence


Reference Sequences
RefSeq Acc Id: ENST00000363355
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1420,414,987 - 20,415,098 (+)Ensembl

Additional Information

Database Acc Id Source(s)
COSMIC RNA5SP382 COSMIC
Ensembl Genes ENSG00000200225 Ensembl, ENTREZGENE
GTEx ENSG00000200225 GTEx
HGNC ID HGNC:43282 ENTREZGENE
Human Proteome Map RNA5SP382 Human Proteome Map
NCBI Gene RN5S382 ENTREZGENE


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2012-08-14 RNA5SP382  RNA, 5S ribosomal pseudogene 382  RN5S382  RNA, 5S ribosomal 382  Symbol and/or name change 5135510 APPROVED