RNA5SP354 (RNA, 5S ribosomal pseudogene 354) - Rat Genome Database

Send us a Message
Submit Data |  Help |  Video Tutorials |  News |  Publications |  Download |  REST API |  Citing RGD |  Contact   
Search RGD Grant Resources Citing RGD About Us Contact Us
Genes Variants Community Projects QTLs Strains Markers Genome Information Ontologies Cell Lines References Download Submit Data
OntoMate (Literature Search) JBrowse (Genome Browser) Synteny Browser (VCMap) Variant Visualizer Multi-Ontology Enrichment (MOET) Gene-Ortholog Location Finder (GOLF) InterViewer (Protein-Protein Interactions) PhenoMiner (Quatitative Phenotypes) Gene Annotator OLGA (Gene List Generator) AllianceMine GViewer (Genome Viewer)
Aging & Age-Related Disease Cancer & Neoplastic Disease Cardiovascular Disease Coronavirus Disease Developmental Disease Diabetes Hematologic Disease Immune & Inflammatory Disease Infectious Disease Liver Disease Neurological Disease Obesity & Metabolic Syndrome Renal Disease Respiratory Disease Sensory Organ Disease
Find Models   new Genetic Models Autism Models Rat PhenoMiner (Quantitative Phenotypes) Chinchilla PhenoMiner Expected Ranges (Quantitative Phenotype) PhenoMiner Term Comparison Hybrid Rat Diversity Panel Phenotypes Phenotypes in Other Animal Models Animal Husbandry Strain Medical Records Phylogenetics Strain Availability Calendar Rats 101 Submissions Photo Archive
Pathways
Rat Community Forum Directory of Rat Laboratories Video Tutorials News RGD Publications RGD Presentations Archive Nomenclature Guidelines Resource Links Laboratory Resources Employment Resources
Gene: RNA5SP354 (RNA, 5S ribosomal pseudogene 354) Homo sapiens
Analyze
Symbol: RNA5SP354
Name: RNA, 5S ribosomal pseudogene 354
RGD ID: 6481668
HGNC Page HGNC:43254
Description:
Type: pseudo (Ensembl: rRNA_pseudogene)
RefSeq Status: INFERRED
Previously known as: RN5S354
Latest Assembly: GRCh38 - Human Genome Assembly GRCh38
Position:
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381226,373,598 - 26,373,733 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1226,373,598 - 26,373,733 (-)EnsemblGRCh38hg38GRCh38
GRCh371226,526,531 - 26,526,666 (-)NCBIGRCh37GRCh37hg19GRCh37
Cytogenetic Map12p11.23NCBI
HuRef1226,296,369 - 26,296,504 (-)NCBIHuRef
CHM1_11226,491,359 - 26,491,494 (-)NCBICHM1_1
T2T-CHM13v2.01226,245,819 - 26,245,954 (-)NCBIT2T-CHM13v2.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


References

Genomics

miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:59
Count of miRNA genes:58
Interacting mature miRNAs:59
Transcripts:ENST00000391247
Prediction methods:Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system sensory system adipose tissue appendage entire extraembryonic component
High
Medium 3 9
Low 94 95 120 99 316 92 280 47 105 42 108 105 8 48 122 1
Below cutoff 265 328 215 121 158 81 566 181 277 38 166 186 43 141 355

Sequence


Reference Sequences
RefSeq Acc Id: ENST00000391247
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1226,373,598 - 26,373,733 (-)Ensembl

Additional Information

Database Acc Id Source(s)
COSMIC RNA5SP354 COSMIC
Ensembl Genes ENSG00000212549 Ensembl, ENTREZGENE
GTEx ENSG00000212549 GTEx
HGNC ID HGNC:43254 ENTREZGENE
Human Proteome Map RNA5SP354 Human Proteome Map
NCBI Gene RN5S354 ENTREZGENE


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2012-08-14 RNA5SP354  RNA, 5S ribosomal pseudogene 354  RN5S354  RNA, 5S ribosomal 354  Symbol and/or name change 5135510 APPROVED