RNA5SP488 (RNA, 5S ribosomal pseudogene 488) - Rat Genome Database

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Gene: RNA5SP488 (RNA, 5S ribosomal pseudogene 488) Homo sapiens
Analyze
Symbol: RNA5SP488
Name: RNA, 5S ribosomal pseudogene 488
RGD ID: 6481660
HGNC Page HGNC:43388
Description:
Type: pseudo (Ensembl: rRNA_pseudogene)
RefSeq Status: INFERRED
Previously known as: RN5S488
Latest Assembly: GRCh38 - Human Genome Assembly GRCh38
Position:
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh382114,070,871 - 14,070,986 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl2114,070,871 - 14,070,986 (+)EnsemblGRCh38hg38GRCh38
GRCh372115,443,192 - 15,443,307 (+)NCBIGRCh37GRCh37hg19GRCh37
Cytogenetic Map21q11.2NCBI
HuRef21812,711 - 812,826 (+)NCBIHuRef
CHM1_12115,003,890 - 15,004,005 (+)NCBICHM1_1
T2T-CHM13v2.02112,414,846 - 12,414,961 (+)NCBIT2T-CHM13v2.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


References

Genomics

miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:478
Count of miRNA genes:352
Interacting mature miRNAs:368
Transcripts:ENST00000364942
Prediction methods:Microtar, Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system sensory system adipose tissue appendage entire extraembryonic component
High
Medium 5 3 3
Low 54 2 22 9 206 9 88 35 104 36 136 91 3 7 12 2
Below cutoff 110 24 25 4 27 3 53 42 120 11 119 42 3 16 32

Sequence


Reference Sequences
RefSeq Acc Id: ENST00000364942
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl2114,070,871 - 14,070,986 (+)Ensembl

Additional Information

Database Acc Id Source(s)
COSMIC RNA5SP488 COSMIC
Ensembl Genes ENSG00000201812 Ensembl, ENTREZGENE
GTEx ENSG00000201812 GTEx
HGNC ID HGNC:43388 ENTREZGENE
Human Proteome Map RNA5SP488 Human Proteome Map
NCBI Gene RN5S488 ENTREZGENE


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2012-08-14 RNA5SP488  RNA, 5S ribosomal pseudogene 488  RN5S488  RNA, 5S ribosomal 488  Symbol and/or name change 5135510 APPROVED