RNA5SP445 (RNA, 5S ribosomal pseudogene 445) - Rat Genome Database

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Gene: RNA5SP445 (RNA, 5S ribosomal pseudogene 445) Homo sapiens
Analyze
Symbol: RNA5SP445
Name: RNA, 5S ribosomal pseudogene 445
RGD ID: 6481625
HGNC Page HGNC:43345
Description:
Type: pseudo (Ensembl: rRNA_pseudogene)
RefSeq Status: INFERRED
Previously known as: RN5S445
Latest Assembly: GRCh38 - Human Genome Assembly GRCh38
Position:
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381766,639,269 - 66,639,383 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1766,639,269 - 66,639,383 (+)EnsemblGRCh38hg38GRCh38
GRCh371764,635,387 - 64,635,501 (+)NCBIGRCh37GRCh37hg19GRCh37
Cytogenetic Map17q24.2NCBI
HuRef1760,026,574 - 60,026,688 (+)NCBIHuRef
CHM1_11764,699,347 - 64,699,461 (+)NCBICHM1_1
T2T-CHM13v2.01767,508,797 - 67,508,911 (+)NCBIT2T-CHM13v2.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


References

Genomics

miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:279
Count of miRNA genes:268
Interacting mature miRNAs:276
Transcripts:ENST00000515889
Prediction methods:Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system sensory system adipose tissue appendage entire extraembryonic component
High
Medium
Low 15 10 26 17 27 17 57 8 61 19 20 27 10 44
Below cutoff 67 23 46 23 74 21 72 26 99 16 46 40 5 17 47 1

Sequence


Reference Sequences
RefSeq Acc Id: ENST00000515889
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1766,639,269 - 66,639,383 (+)Ensembl

Additional Information

Database Acc Id Source(s)
COSMIC RNA5SP445 COSMIC
Ensembl Genes ENSG00000251698 Ensembl, ENTREZGENE
GTEx ENSG00000251698 GTEx
HGNC ID HGNC:43345 ENTREZGENE
Human Proteome Map RNA5SP445 Human Proteome Map
NCBI Gene RN5S445 ENTREZGENE


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2012-08-14 RNA5SP445  RNA, 5S ribosomal pseudogene 445  RN5S445  RNA, 5S ribosomal 445  Symbol and/or name change 5135510 APPROVED